View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5850-Insertion-7 (Length: 150)
Name: NF5850-Insertion-7
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5850-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 3e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 31492330 - 31492458
Alignment:
| Q |
8 |
actgtggatacccacaggcttatccacatgcatatccaccggatccaccaacttattcacaggttccaccagttccacagacttattcacatactccacc |
107 |
Q |
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| T |
31492330 |
actgtggatacccagaggcttatccacatgcatatccaccgaatccaccaacttattcacaggttc---------cacagacttattcacatgctccacc |
31492420 |
T |
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| Q |
108 |
aacttacccacaacctccatcagtttatccacaggttc |
145 |
Q |
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| T |
31492421 |
aacttacccacaacctccatcagtttatccacaggttc |
31492458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 31497719 - 31497847
Alignment:
| Q |
8 |
actgtggatacccacaggcttatccacatgcatatccaccggatccaccaacttattcacaggttccaccagttccacagacttattcacatactccacc |
107 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
31497719 |
actgtggatacccagaggcttatccacatgcatatccaccgaatccaccaacttattcacaggttc---------cacagacttattcacatgctccacc |
31497809 |
T |
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| Q |
108 |
aacttacccacaacctccatcagtttatccacaggttc |
145 |
Q |
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| T |
31497810 |
aacttacccacaacctccatcagtttatccacaggttc |
31497847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 31503106 - 31503234
Alignment:
| Q |
8 |
actgtggatacccacaggcttatccacatgcatatccaccggatccaccaacttattcacaggttccaccagttccacagacttattcacatactccacc |
107 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
31503106 |
actgtggatacccagaggcttatccacatgcatatccaccgaatccaccaacttattcacaggttc---------cacagacttattcacatgctccacc |
31503196 |
T |
|
| Q |
108 |
aacttacccacaacctccatcagtttatccacaggttc |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
31503197 |
aacttacccacaacctccatcagtttatccacaggttc |
31503234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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