View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5850_low_2 (Length: 473)
Name: NF5850_low_2
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5850_low_2 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 455
Target Start/End: Original strand, 40947560 - 40947997
Alignment:
| Q |
15 |
aatgaagcaatgggaaaacctacttttgtgaagtcaacnnnnnnntcagcaaaatattatacacaaacataaaactacgtaaacatttcaacccaaacta |
114 |
Q |
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| T |
40947560 |
aatgaagcaatgggaaaacctacttgtgtgaagtcaacaaaaaaatcagcaaaatattatacacaaacataaaactacgtaaacatttcaacccaaacta |
40947659 |
T |
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| Q |
115 |
gctagggaagcattaatctactcttaaatatgaacataattnnnnnnnnntgtcaattttgatatattgtgttttgaattcctaaagttagatgattaat |
214 |
Q |
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| T |
40947660 |
gctagggaagcattaatctactcttaaatatgaacataattaaaaaaaa-tgtcaattttcatacattgtgttttgaattcctaaagttagatgattaat |
40947758 |
T |
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| Q |
215 |
ttgagnnnnnnntaaataaatggtgaaatagaaactttgagttaaattagaagatctagggagtaatttagtaaaagagaaatataatggagtatgannn |
314 |
Q |
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| T |
40947759 |
ttgagaaaaaa-taaataaatggtgaaatagaaactttgagttaaattagaagatctagggagtaatttagtaaaagagaaatataatagagtatg-gtt |
40947856 |
T |
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| Q |
315 |
nnnnnatcttctgaaattaaagtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagcccatcatctgcttt |
414 |
Q |
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| T |
40947857 |
tttttatcttctcaaattaaagtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagtccatcatctgcttt |
40947956 |
T |
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| Q |
415 |
tgtcctctgacacatgatgcatgattcttccatgcatgtgt |
455 |
Q |
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| T |
40947957 |
tgtcctctgacacatgatgcatgattcttccatgcatgtgt |
40947997 |
T |
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Target: scaffold0013 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 335 - 455
Target Start/End: Original strand, 38401 - 38521
Alignment:
| Q |
335 |
agtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagcccatcatctgcttttgtcctctgacacatgatgc |
434 |
Q |
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| T |
38401 |
agtgcaagagagctaacttcatcatgtttccaaatcccttcctcatacctaaaccacctaggaagcccacaatcaactcttgttcgatgacacatgatgc |
38500 |
T |
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| Q |
435 |
atgattcttccatgcatgtgt |
455 |
Q |
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| T |
38501 |
atgattctttcatgcatgtgt |
38521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 455
Target Start/End: Complemental strand, 45656649 - 45656527
Alignment:
| Q |
333 |
aaagtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagcccatcatctgcttttgtcctctgacacatgat |
432 |
Q |
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| T |
45656649 |
aaagtgcaagagagctaacttcatcatgtttccaaatcccttcctcatacttgaaccacctaacaagcccatcatcatctcttgtcctcttacacatgat |
45656550 |
T |
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| Q |
433 |
gcatgattcttccatgcatgtgt |
455 |
Q |
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| T |
45656549 |
gcacgattccttgatgcatgtgt |
45656527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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