View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5850_low_3 (Length: 298)
Name: NF5850_low_3
Description: NF5850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5850_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 2 - 290
Target Start/End: Original strand, 3176238 - 3176526
Alignment:
| Q |
2 |
aataacttacacataaatactaaacaaacaaaatgaaatacattaaataactcaacttcaacttacttatatttcaggaaggaattgcagttggaagaac |
101 |
Q |
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| T |
3176238 |
aataacttatacataaatactaaacaaacaaaatgaaatacattaaataactcaactttaacttacttatatttcaggaaggaattgcagttggaagaac |
3176337 |
T |
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| Q |
102 |
atttgcttcacttcagaactaccaagtggatggaaacaaagaaatgatggctattggtcttatgaacatagctggctcttgttcttcatgttatgtcaca |
201 |
Q |
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| T |
3176338 |
atttgcttcacttcagaactaccaagtggatggaaacaaagaaatgatggctattggtcttatgaacatagctggctcttgttcttcatgttatgtcaca |
3176437 |
T |
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| Q |
202 |
acaggcaatgattcatcacaagtagttgttaaagaaatcaaaagtttttcaagaaaaatatcaattctaatcttttaaaaatattcttg |
290 |
Q |
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| T |
3176438 |
acaggcaatgattcatcacaagtagttgttaaagaaatcaaaagtttttcaagaaaaatatcaattctaatcttttaaaaataatcttg |
3176526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 44011103 - 44010970
Alignment:
| Q |
73 |
tttcaggaaggaattgcagttggaagaacatttgcttcacttcagaactaccaagtggatggaaacaaagaaatgatggctattggtcttatgaacatag |
172 |
Q |
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|||||||||||||||||||| || ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44011103 |
tttcaggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacatag |
44011004 |
T |
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| Q |
173 |
ctggctcttgttcttcatgttatgtcacaacagg |
206 |
Q |
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| T |
44011003 |
ctggatcttgtacttcatgctatgtcacaacagg |
44010970 |
T |
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