View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5851-Insertion-2 (Length: 234)

Name: NF5851-Insertion-2
Description: NF5851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5851-Insertion-2
NF5851-Insertion-2
[»] chr2 (2 HSPs)
chr2 (7-234)||(10035918-10036145)
chr2 (7-234)||(10096286-10096524)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 10036145 - 10035918
Alignment:
Q  7 caagaaattggtcatgctgcagctgtcacgcacccaccagcttctgttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatac 106  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10036145 caagaaattggtcatgctgcagctgtcacgcacccaccagctgctgttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatac 10036046  T
Q  107 ctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctgtgcagaaccgtacctgtatcagaatttgcctacgtgataaggaaggcgccta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10036045 ctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctgtgcagaaccgtacctgtatcagaatttgcctacgtgataaggaaggcgccta 10035946  T
Q  207 tatgctagcgaaaaccatgagcttctca 234  Q
    ||||||||||||||||||||||||||||    
T  10035945 tatgctagcgaaaaccatgagcttctca 10035918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 10096524 - 10096286
Alignment:
Q  7 caagaaattggtcatgctgcagctgtcacgcacccaccagcttctgttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatac 106  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10096524 caagaaattggtcatgctgcagctgtcacgcacccactagctgctgttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatac 10096425  T
Q  107 ctcttcctggtcgagttaaatgcaacattgatgcctcattttc-----------gcctgtgcagaaccgtacctgtatcagaatttgcctacgtgataag 195  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||||||| |||||||| |||||||||||||||||||||||    
T  10096424 ctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcctcattttcgcctgtgcagaacggtacctgtttcagaatttgcctacgtgataag 10096325  T
Q  196 gaaggcgcctatatgctagcgaaaaccatgagcttctca 234  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10096324 gaaggcgcctatatgctagcgaaaaccatgagcttctca 10096286  T

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