View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5851_high_4 (Length: 235)

Name: NF5851_high_4
Description: NF5851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5851_high_4
NF5851_high_4
[»] chr1 (2 HSPs)
chr1 (1-225)||(27877185-27877409)
chr1 (28-222)||(10395789-10395984)
[»] chr6 (2 HSPs)
chr6 (1-225)||(32895502-32895727)
chr6 (3-222)||(13104773-13104992)
[»] chr8 (3 HSPs)
chr8 (1-225)||(21276790-21277014)
chr8 (1-222)||(18178609-18178831)
chr8 (3-222)||(26951845-26952064)
[»] scaffold0010 (1 HSPs)
scaffold0010 (3-222)||(255770-255990)
[»] chr2 (1 HSPs)
chr2 (3-222)||(28590357-28590577)
[»] chr3 (2 HSPs)
chr3 (3-222)||(47704140-47704360)
chr3 (3-114)||(26731276-26731387)
[»] chr4 (1 HSPs)
chr4 (3-222)||(23059746-23059966)
[»] chr7 (1 HSPs)
chr7 (3-222)||(12128995-12129215)
[»] chr5 (4 HSPs)
chr5 (90-219)||(30304358-30304488)
chr5 (3-162)||(24869977-24870136)
chr5 (4-77)||(24274874-24274947)
chr5 (4-77)||(24387266-24387339)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27877409 - 27877185
Alignment:
Q  1 tattgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttga 100  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27877409 tattgcatttgtatctgccaggtgctggtttcttccaaacatcttcctcttgtctggatggctgaacttgtggagttgtagattgagtgttgctgcttga 27877310  T
Q  101 tctaattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcgttcgatctcaagttgttgcttccaaagtttcaagtttc 200  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27877309 tctaattctttgggttgttcgccattcttcaaatacatgggttgcacgttggaacacctgcggtcgatctcaagttgttgcttccaaagtttcaagtttc 27877210  T
Q  201 tacatttccatagactccacatgat 225  Q
    ||||| |  ||||||||||||||||    
T  27877209 tacatatttatagactccacatgat 27877185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 10395789 - 10395984
Alignment:
Q  28 gtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttgatctaattctttgggatgttcaccattc 127  Q
    ||||||||||||||||||||| ||||||    ||||||||||| |||||| | |||||| | |||||||| |||||||||||||||| ||||||||||||    
T  10395789 gtttcttccaaacatcttcctcttgtctcataggctgaacttgcggagttatggattgattactgctgctggatctaattctttgggctgttcaccattc 10395888  T
Q  128 ttcaaatacatgggttgcacgttggaacacctgcg-ttcgatctcaagttgttgcttccaaagtttcaagtttctacatttccatagactccacat 222  Q
    ||||| |||||||||||||||||| ||||||||||  ||| |||| |||||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  10395889 ttcaagtacatgggttgcacgttgaaacacctgcgagtcggtctcgagttgttgctgccaaagtttcatgtttctacatttccaaaggctccacat 10395984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 32895727 - 32895502
Alignment:
Q  1 tattgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttga 100  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32895727 tattgcatttgtaactgccaggtgctggtttcttccaaacatcttcctcttgtctggaaggctgaacttgtggagttgtagattgagtgctgctgcttga 32895628  T
Q  101 tctaattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcg-ttcgatctcaagttgttgcttccaaagtttcaagttt 199  Q
    ||||||| |||||| || || ||||||||||||||||||||||||||||||| |||||||||  |||  |||||||||||||| ||||||||||| ||||    
T  32895627 tctaattttttgggttgctcgccattcttcaaatacatgggttgcacgttggtacacctgcgagtcggcctcaagttgttgctgccaaagtttcaggttt 32895528  T
Q  200 ctacatttccatagactccacatgat 225  Q
    ||||||||||||||||||||||||||    
T  32895527 ctacatttccatagactccacatgat 32895502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 13104773 - 13104992
Alignment:
Q  3 ttgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttgatc 102  Q
    |||||||| || |||| | ||||  |||||||||||  |||||||| || |||  | || ||||| ||||||||| | ||||||||| ||||||| ||||    
T  13104773 ttgcatttatacctgctaggtgccggtttcttccaacaatcttcctcttatcttaaaggttgaacctgtggagttatggattgagtggtgctgctggatc 13104872  T
Q  103 taattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcgttcgatctcaagttgttgcttccaaagtttcaagtttcta 202  Q
    |||||| ||||| ||||||||||||||||| || ||| ||||||||||| |||||||||| | | |||| | |||||||| ||||||||||| ||||| |    
T  13104873 taattcgttgggttgttcaccattcttcaagtaaatgagttgcacgttgaaacacctgcgatgggtctcgaattgttgctgccaaagtttcatgtttcga 13104972  T
Q  203 catttccatagactccacat 222  Q
    |||||||| || ||||||||    
T  13104973 catttccaaaggctccacat 13104992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 21276790 - 21277014
Alignment:
Q  1 tattgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttga 100  Q
    ||||||||||||| |||||| ||||  ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| ||| ||||||||||    
T  21276790 tattgcatttgtacctgccaggtgccggtttcttccaaacatcttcctcttgtctgaaaggctgaacttgtggagttgtagattg-gtgatgctgcttga 21276888  T
Q  101 tctaattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcg-ttcgatctcaagttgttgcttccaaagtttcaagttt 199  Q
     |||||||||| || ||||| ||||||||||| ||||||||||||  | || ||||||||||  |||  |||||||||||||| ||||||||||| ||||    
T  21276889 cctaattctttaggttgttcgccattcttcaagtacatgggttgcgtgatgaaacacctgcgagtcggactcaagttgttgctgccaaagtttcatgttt 21276988  T
Q  200 ctacatttccatagactccacatgat 225  Q
    ||||||||||| ||||||||||||||    
T  21276989 ctacatttccaaagactccacatgat 21277014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18178831 - 18178609
Alignment:
Q  1 tattgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttga 100  Q
    ||||||||||||| || ||| ||||  ||||||||||||||||||||| ||||||  | |||||||| ||| ||||| || |||||||||||||||| ||    
T  18178831 tattgcatttgtaccttccaggtgccggtttcttccaaacatcttcctcttgtctcaaaggctgaacctgtagagttataaattgagtgctgctgctgga 18178732  T
Q  101 tctaattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcg-ttcgatctcaagttgttgcttccaaagtttcaagttt 199  Q
    || ||||||||||| | ||| ||||||||||| |||||| ||||||| ||| ||||| ||||  ||| |||||| |||||||| ||||||||||| ||||    
T  18178731 tcaaattctttgggctattcgccattcttcaagtacatgagttgcacattgaaacacttgcgagtcggtctcaatttgttgctgccaaagtttcatgttt 18178632  T
Q  200 ctacatttccatagactccacat 222  Q
    ||||||||||| || ||||||||    
T  18178631 ctacatttccaaaggctccacat 18178609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 26951845 - 26952064
Alignment:
Q  3 ttgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttgatc 102  Q
    |||||||| || |||||| ||||  ||||||||||||||||||||| ||||||  | | | |||| ||||||||| | | |||  | |||||||||||||    
T  26951845 ttgcatttatacctgccaggtgccggtttcttccaaacatcttcctcttgtctcaaagaccgaacctgtggagttatggtttggttactgctgcttgatc 26951944  T
Q  103 taattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcgt-tcgatctcaagttgttgcttccaaagtttcaagtttct 201  Q
    |||||||||||| ||||  |||||| |||| |||||| ||||||||||| | ||||||||  ||  ||||||||||||||| ||||||||||| ||||||    
T  26951945 taattctttgggttgttg-ccattcgtcaagtacatgagttgcacgttgaagcacctgcgaatctgtctcaagttgttgctgccaaagtttcatgtttct 26952043  T
Q  202 acatttccatagactccacat 222  Q
    |||||| || || ||||||||    
T  26952044 acattttcaaaggctccacat 26952064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 255770 - 255990
Alignment:
Q  3 ttgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttgatc 102  Q
    |||||||| || |||||| ||||  ||||||||||||||||||||| ||||||  | ||| |||| ||||||||| | | |||  | |||||||||||||    
T  255770 ttgcatttatacctgccaggtgccggtttcttccaaacatcttcctcttgtctcaaaggccgaacctgtggagttatggtttggttactgctgcttgatc 255869  T
Q  103 taattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcg-ttcgatctcaagttgttgcttccaaagtttcaagtttct 201  Q
    |||||||||||| ||||  ||||||||||| |||||| ||||||||||| | ||||||||  ||  ||||||||||||||| ||||||||||| ||||||    
T  255870 taattctttgggctgtttgccattcttcaagtacatgagttgcacgttgaagcacctgcgaatctgtctcaagttgttgctgccaaagtttcatgtttct 255969  T
Q  202 acatttccatagactccacat 222  Q
    ||||||||| || ||||||||    
T  255970 acatttccaaaggctccacat 255990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 28590357 - 28590577
Alignment:
Q  3 ttgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttgatc 102  Q
    |||||||| || |||||| ||||  ||||||||||||||||||||| ||||||  | | | |||| ||||||||| ||| |||  | |||||||||||||    
T  28590357 ttgcatttatacctgccaggtgccggtttcttccaaacatcttcctcttgtctcaaagaccgaacctgtggagttatagtttggttactgctgcttgatc 28590456  T
Q  103 taattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcg-ttcgatctcaagttgttgcttccaaagtttcaagtttct 201  Q
    |||||||||||| ||||  ||||||||||| |||||| ||||||||||| | ||||||||  ||  ||||||||||||||| ||||||||||| ||||||    
T  28590457 taattctttgggctgtttgccattcttcaagtacatgagttgcacgttgaagcacctgcgaatctgtctcaagttgttgctgccaaagtttcatgtttct 28590556  T
Q  202 acatttccatagactccacat 222  Q
    ||||||||| || ||||||||    
T  28590557 acatttccaaaggctccacat 28590577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 47704140 - 47704360
Alignment:
Q  3 ttgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttgatc 102  Q
    |||||||| || |||||| ||||  ||||||||||||||||||||| ||||||  | | | |||| ||||||||| | | |||  | |||||||||||||    
T  47704140 ttgcatttatacctgccaggtgccggtttcttccaaacatcttcctcttgtctcaaagaccgaacctgtggagttatggtttggttactgctgcttgatc 47704239  T
Q  103 taattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcg-ttcgatctcaagttgttgcttccaaagtttcaagtttct 201  Q
    |||||||||||| ||||  ||||||||||| |||||| ||||||||||| | ||||||||  ||  ||||||||||||||| ||||||||||| ||||||    
T  47704240 taattctttgggctgtttgccattcttcaagtacatgagttgcacgttgaagcacctgcgaatctgtctcaagttgttgctgccaaagtttcatgtttct 47704339  T
Q  202 acatttccatagactccacat 222  Q
    ||||||||| || ||||||||    
T  47704340 acatttccaaaggctccacat 47704360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 26731276 - 26731387
Alignment:
Q  3 ttgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttgatc 102  Q
    |||||||| || |||||| ||||  ||||||||||||||||||||| ||||||  | ||| |||| ||||||||| | | |||  | ||||||| |||||    
T  26731276 ttgcatttatacctgccaggtgccggtttcttccaaacatcttcctcttgtctcaaaggccgaacctgtggagttatgggttggttactgctgcatgatc 26731375  T
Q  103 taattctttggg 114  Q
    ||||||||||||    
T  26731376 taattctttggg 26731387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 23059746 - 23059966
Alignment:
Q  3 ttgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttgatc 102  Q
    |||||||| || |||||| ||||  ||||||||||||||||||||| ||||||  | | | |||| ||||||||| | | |||  | |||||||||||||    
T  23059746 ttgcatttatacctgccaggtgccggtttcttccaaacatcttcctcttgtctcaaagaccgaacctgtggagttatggtttggttactgctgcttgatc 23059845  T
Q  103 taattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgc--gttcgatctcaagttgttgcttccaaagtttcaagtttc 200  Q
    |||||||||||| ||||  ||||||||||| |||||| ||||||||||| | |||||||   || | ||||||||||||||| ||||||||||| |||||    
T  23059846 taattctttgggctgtttgccattcttcaagtacatgagttgcacgttgaagcacctgcaaatttg-tctcaagttgttgctgccaaagtttcatgtttc 23059944  T
Q  201 tacatttccatagactccacat 222  Q
    |||||||||| || ||||||||    
T  23059945 tacatttccaaaggctccacat 23059966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 12129215 - 12128995
Alignment:
Q  3 ttgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttgatc 102  Q
    |||||||| || |||||| |||   ||||||| ||||||||||||| ||||||  | ||  |||| ||||||||| | | |||  | || ||||||||||    
T  12129215 ttgcatttatacctgccaggtgtcggtttctttcaaacatcttcctcttgtctcaaaggtcgaacctgtggagttatgggttggttactactgcttgatc 12129116  T
Q  103 taattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcg-ttcgatctcaagttgttgcttccaaagtttcaagtttct 201  Q
    |||||||||||| ||||  ||||||||||  |||||| ||||||||||| | ||| ||||  ||  ||||||  ||||||| ||||||||||| ||||||    
T  12129115 taattctttgggctgtttgccattcttcatgtacatgagttgcacgttgaagcacatgcgagtctgtctcaaaatgttgctgccaaagtttcatgtttct 12129016  T
Q  202 acatttccatagactccacat 222  Q
    ||||||||| || ||||||||    
T  12129015 acatttccaaaggctccacat 12128995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 30304488 - 30304358
Alignment:
Q  90 ctgctgcttgatctaattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcg-ttcgatctcaagttgttgcttccaaa 188  Q
    ||||||||||||||||||||||||| ||||  |||||| |||| ||||||  |||||||||| | ||||||||  ||  ||||||||||||||| |||||    
T  30304488 ctgctgcttgatctaattctttgggttgtttgccattcgtcaagtacatgaattgcacgttgaagcacctgcgaatctgtctcaagttgttgctgccaaa 30304389  T
Q  189 gtttcaagtttctacatttccatagactcca 219  Q
    | |||| ||||||||||||||| || |||||    
T  30304388 gcttcatgtttctacatttccaaaggctcca 30304358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 24870136 - 24869977
Alignment:
Q  3 ttgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagttgtagattgagtgctgctgcttgatc 102  Q
    |||||||| || |||||| ||||  |||||||||||  |||||||||||||||    ||| |||| || |||||| | ||||||||| || || | ||||    
T  24870136 ttgcatttatacctgccaagtgccggtttcttccaactatcttcctattgtcttataggccgaacctgcggagttatggattgagtgatgttggtagatc 24870037  T
Q  103 taattctttgggatgttcaccattcttcaaatacatgggttgcacgttggaacacctgcg 162  Q
    ||||||||||| |||||| | ||||||||| ||  || ||||||||||| ||||||||||    
T  24870036 taattctttggcatgttctctattcttcaagtaggtgagttgcacgttgaaacacctgcg 24869977  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 24274947 - 24274874
Alignment:
Q  4 tgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagtt 77  Q
    ||||||| |||||||||  |||  ||||||||||||||||||||| ||||||  | ||| |||| |||||||||    
T  24274947 tgcatttatatctgccagatgccggtttcttccaaacatcttcctcttgtctcaaaggccgaacctgtggagtt 24274874  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 24387266 - 24387339
Alignment:
Q  4 tgcatttgtatctgccacgtgcttgtttcttccaaacatcttcctattgtctggatggctgaacttgtggagtt 77  Q
    ||||||| |||||||||  |||  ||||||||||||||||||||| ||||||  | ||| |||| |||||||||    
T  24387266 tgcatttatatctgccagatgccggtttcttccaaacatcttcctcttgtctcaaaggccgaacctgtggagtt 24387339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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