View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5851_high_5 (Length: 223)

Name: NF5851_high_5
Description: NF5851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5851_high_5
NF5851_high_5
[»] chr4 (8 HSPs)
chr4 (1-217)||(9581951-9582167)
chr4 (1-217)||(9587646-9587862)
chr4 (15-217)||(9569099-9569301)
chr4 (15-222)||(9593739-9593946)
chr4 (49-214)||(9602556-9602721)
chr4 (11-217)||(54295049-54295255)
chr4 (11-177)||(37897848-37898014)
chr4 (11-61)||(9574226-9574276)
[»] chr6 (18 HSPs)
chr6 (49-217)||(29012773-29012941)
chr6 (54-217)||(29131254-29131417)
chr6 (11-185)||(29145199-29145373)
chr6 (53-212)||(29300023-29300182)
chr6 (53-217)||(29152098-29152262)
chr6 (77-185)||(32740715-32740823)
chr6 (54-222)||(32744824-32744992)
chr6 (53-217)||(34278416-34278580)
chr6 (54-217)||(32960702-32960865)
chr6 (54-222)||(29124094-29124262)
chr6 (11-217)||(34281821-34282027)
chr6 (12-137)||(34258303-34258428)
chr6 (53-157)||(29137227-29137331)
chr6 (54-141)||(25520027-25520113)
chr6 (89-133)||(19697525-19697569)
chr6 (58-134)||(25319361-25319437)
chr6 (53-177)||(25528826-25528950)
chr6 (58-134)||(26149054-26149130)
[»] chr7 (1 HSPs)
chr7 (12-213)||(42446242-42446442)
[»] scaffold0134 (1 HSPs)
scaffold0134 (11-217)||(16194-16400)
[»] scaffold0613 (1 HSPs)
scaffold0613 (11-217)||(100-306)
[»] scaffold0054 (2 HSPs)
scaffold0054 (114-217)||(33436-33539)
scaffold0054 (114-217)||(39787-39890)
[»] scaffold0129 (2 HSPs)
scaffold0129 (119-179)||(10486-10546)
scaffold0129 (85-184)||(33551-33650)
[»] chr5 (5 HSPs)
chr5 (61-185)||(32642902-32643026)
chr5 (121-185)||(42413999-42414063)
chr5 (120-185)||(39724570-39724635)
chr5 (120-181)||(15807722-15807783)
chr5 (109-177)||(42637357-42637425)
[»] chr3 (1 HSPs)
chr3 (119-183)||(5162455-5162519)
[»] chr1 (1 HSPs)
chr1 (114-185)||(368801-368872)
[»] chr2 (1 HSPs)
chr2 (90-143)||(7429022-7429075)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 9582167 - 9581951
Alignment:
Q  1 tcatcacatacataccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcata 100  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  9582167 tcataacatacataccctcatacttagatgattgtttcaatcttcacaccttgtggataaacttggcggtgttaaatgggtccattgcattgatctcata 9582068  T
Q  101 tcatgaagacacgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgtt 200  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||  |||||||||| ||    
T  9582067 tcatgaagagacgacaaattttcacatatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcatt 9581968  T
Q  201 gagcgtcctatcggagt 217  Q
    ||||||||||| |||||    
T  9581967 gagcgtcctattggagt 9581951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 9587862 - 9587646
Alignment:
Q  1 tcatcacatacataccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcata 100  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  9587862 tcataacatacataccctcatacttagatgattgtttcaatcttcacaccttgtggataaacttggcggtgttaaatgggtccattgcattgatctcata 9587763  T
Q  101 tcatgaagacacgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgtt 200  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||  |||||||||| ||    
T  9587762 tcatgaagagacgacaaattttcacatatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcatt 9587663  T
Q  201 gagcgtcctatcggagt 217  Q
    ||||||||||| |||||    
T  9587662 gagcgtcctattggagt 9587646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 9569099 - 9569301
Alignment:
Q  15 ccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacga 114  Q
    ||||||||||| ||||||||||||||| ||||  ||||||||||||||||||  ||||| || ||| ||||||| |||||||||||||||||||| ||||    
T  9569099 ccctcatacttggatgattgtttcgatgttcaagcattgtggataaacttggtggtgttaaacggggccattgcgttgatctcatatcatgaagagacga 9569198  T
Q  115 ctaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcgg 214  Q
    |||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||| ||||||||  |||||||||| ||||||||||||||||    
T  9569199 ctaattttcacatatcgattttgggtgaatatggcattaaggaatcgtggaccaaactcttccttgttggaccgttgtcttgcattgagcgtcctatcgg 9569298  T
Q  215 agt 217  Q
    |||    
T  9569299 agt 9569301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 9593946 - 9593739
Alignment:
Q  15 ccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacga 114  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||| |||||||||||||||||||| |||| || |    
T  9593946 ccctcatacttggatgattgtttcgatcttcacgcattgtggataaacttggtggtgttaaatgggtcctttgcattgatctcatatcataaagagacaa 9593847  T
Q  115 ctaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcgg 214  Q
    |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||  |||||||||| |||  |||||||| | |||||||||| |||||    
T  9593846 ctaattttcagatatcaattttgggtgaatacggtataaaggaatcgtggaccaatttcttcattgtcggaccgttgtctttcattgagcgtcccatcgg 9593747  T
Q  215 agtaggta 222  Q
    ||| ||||    
T  9593746 agtgggta 9593739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 9602721 - 9602556
Alignment:
Q  49 cattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatgg 148  Q
    ||||||||||||||||||  ||||| ||||||||| || ||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||| ||    
T  9602721 cattgtggataaacttggtggtgttaaatgggtccgtttcattgatctcatatcataaagagacgaataattttcaaatatcaattttgggtgaatacgg 9602622  T
Q  149 tataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcgg 214  Q
    ||||||||||||||||||||||||||| | |||||||  |||||||||| ||||||||||||||||    
T  9602621 tataaaggagtcgtggaccaaactctttaatgttggatcgttgtcttgcattgagcgtcctatcgg 9602556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 54295255 - 54295049
Alignment:
Q  11 cataccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagac 110  Q
    |||| ||||| |||||||||||||||| ||| ||||  |||||||||||| |||||| ||  | ||||||| |||||||||||||||||||||||||||     
T  54295255 catatcctcaaacttagatgattgttttgatgttcaagcattgtggataaccttggcggtactaaatgggtgcattgcattgatctcatatcatgaagag 54295156  T
Q  111 acgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtccta 210  Q
     | |||||||||||||||||||||||||||||||  ||| | |  || |||||||||||||| ||||||||||||  ||||||||  ||||||| |||||    
T  54295155 tccactaattttcacatatcaattttgggtgaattcggtgtgatagaatcgtggaccaaacttttcattgttggaccgttgtcttatgttgagcatccta 54295056  T
Q  211 tcggagt 217  Q
    |||||||    
T  54295055 tcggagt 54295049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 37897848 - 37898014
Alignment:
Q  11 cataccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagac 110  Q
    |||||||||| |||| || |||||||| ||| || |  | ||||||||||||||||| |||||  ||| ||||||||||||| ||||||||||||||||     
T  37897848 cataccctcagacttggacgattgttttgatgttaaagctttgtggataaacttggcggtgttatatgagtccattgcattgttctcatatcatgaagag 37897947  T
Q  111 acgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttca 177  Q
    ||||||| ||||||| ||||| ||||||| |||  |||||| ||||| |||||||||||||||||||    
T  37897948 acgactacttttcacgtatcagttttgggcgaacttggtatgaaggaatcgtggaccaaactcttca 37898014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 9574226 - 9574276
Alignment:
Q  11 cataccctcatacttagatgattgtttcgatcttcacacattgtggataaa 61  Q
    |||||||||||||||||||||| |||||||| ||||  |||||||||||||    
T  9574226 cataccctcatacttagatgatagtttcgatgttcaagcattgtggataaa 9574276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 29012773 - 29012941
Alignment:
Q  49 cattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatgg 148  Q
    |||||||| |||||||||| || || |||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| || |  ||    
T  29012773 cattgtggttaaacttggcggtattaaatgggtccattgcattggtctcatatcataaagagacgactaattttcacatatcaattttgggggatttcgg 29012872  T
Q  149 tataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagt 217  Q
    | | ||||| || ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  29012873 tgtgaaggaatcatggaccaaactcttcattgttggaccgttgtcttgcgttaagcgtcctatcggagt 29012941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 54 - 217
Target Start/End: Original strand, 29131254 - 29131417
Alignment:
Q  54 tggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtataa 153  Q
    |||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||| ||| ||||    
T  29131254 tggataaacttggcagtgttgaatgtgtccattgcattgatgtcatatcatgaaggcacaactacttttcacatatcaattttgggtgaatttggcataa 29131353  T
Q  154 aggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagt 217  Q
    | || |||||||||||  ||||||||||||||   |||||| |||||||||||||||| |||||    
T  29131354 aagaatcgtggaccaagatcttcattgttggaccattgtctggcgttgagcgtcctattggagt 29131417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 29145199 - 29145373
Alignment:
Q  11 cataccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagac 110  Q
    |||||||||| |||||||||||||||||||| || |  |||||||||||||| |||| ||| | ||||  | ||||||||||||||||||||||||| |     
T  29145199 cataccctcagacttagatgattgtttcgatgttgaagcattgtggataaacctggcagtgataaatgatttcattgcattgatctcatatcatgaacaa 29145298  T
Q  111 acgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttgga 185  Q
    || |||||||||||||||||||||||||||| ||  ||||| ||||| || |||||||||||||| ||| |||||    
T  29145299 actactaattttcacatatcaattttgggtggattaggtatgaaggaatcatggaccaaactctttattcttgga 29145373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 212
Target Start/End: Original strand, 29300023 - 29300182
Alignment:
Q  53 gtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtata 152  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| |||  || | ||||||| ||||||||||||||||||||||||     |||||    
T  29300023 gtggataaacttggctgtgttaaatgggtccattgccttgatctcatttcaaaaaaagacgactacttttcacatatcaattttgggtgagctcagtata 29300122  T
Q  153 aaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatc 212  Q
    ||||| ||||||||||| ||||||| |||||||  |||| |||||||  |||||||||||    
T  29300123 aaggaatcgtggaccaatctcttcaatgttggaccgttggcttgcgtccagcgtcctatc 29300182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 217
Target Start/End: Complemental strand, 29152262 - 29152098
Alignment:
Q  53 gtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtata 152  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||||||| ||||||| ||||||| |||||   |||||||||||||| ||   ||| |     
T  29152262 gtggataaacttgggtgtgttaaatgggtccatagcattgatctcatataatgaagagacgactacttttcgtgtatcaattttgggtcaactcggtttc 29152163  T
Q  153 aaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagt 217  Q
    |  || ||||||| |||||||||||| ||||||  |||| ||| |||||||||||||||||||||    
T  29152162 agagaatcgtggatcaaactcttcatggttggaccgttgccttacgttgagcgtcctatcggagt 29152098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 32740823 - 32740715
Alignment:
Q  77 tgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttc 176  Q
    ||||| |||||| ||||||||| ||||||||||||| |||| ||||| | ||||||||||||||||||  || |||||||| ||||||||||||||||||    
T  32740823 tgggttcattgccttgatctcacatcatgaagacacaactacttttctcgtatcaattttgggtgaattcggcataaaggaatcgtggaccaaactcttc 32740724  T
Q  177 attgttgga 185  Q
    |||||||||    
T  32740723 attgttgga 32740715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 32744992 - 32744824
Alignment:
Q  54 tggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtataa 153  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||||||| ||||| | ||||||| |||||||||||||||| |||||||   |||||| |    
T  32744992 tggagaaacttggcggtgttaaatgggtccattgcattgatctcatattatgaaaagacgactacttttcacatatcaattatgggtgagattggtatga 32744893  T
Q  154 aggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggta 222  Q
    | || || |||||||| ||||||| | |||||   ||| |||||||||| || ||||| ||||| ||||    
T  32744892 aagaatcatggaccaatctcttcactattggaccattgccttgcgttgatcggcctattggagtgggta 32744824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 53 - 217
Target Start/End: Complemental strand, 34278580 - 34278416
Alignment:
Q  53 gtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtata 152  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||| |||||||| |||| | ||||| |||||   |||| ||||||||| ||   ||| |     
T  34278580 gtggataaacttggtggtgttaaatgggtccatagcattgatcacatatcataaagagatgactacttttcgtgtatcgattttgggtcaactcggtttc 34278481  T
Q  153 aaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagt 217  Q
    || || || |||| |||||||||||| ||||||  |||| ||| |||||||||||||||||||||    
T  34278480 aaagaatcttggatcaaactcttcatggttggaccgttgccttacgttgagcgtcctatcggagt 34278416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 217
Target Start/End: Complemental strand, 32960865 - 32960702
Alignment:
Q  54 tggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtataa 153  Q
    |||||||||||||| ||| | |||||||||||||||||| ||||| |   |||||| ||||||| ||||||  |||||||||||| ||||   ||||| |    
T  32960865 tggataaacttggcggtgctaaatgggtccattgcattgttctcacacattgaagagacgactacttttcatgtatcaattttggatgaaatcggtatga 32960766  T
Q  154 aggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagt 217  Q
    |||| || |||| ||||||||| |||||| ||   ||| |||| |||||||||||||| |||||    
T  32960765 aggaatcttggatcaaactctttattgttagaccattgccttgtgttgagcgtcctatgggagt 32960702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 29124094 - 29124262
Alignment:
Q  54 tggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtataa 153  Q
    |||| ||||||||| ||||| |||||| ||||||||||| |||||||||||||| | | ||||| |||||| ||||||||| |||||||    ||||| |    
T  29124094 tggagaaacttggcagtgttaaatgggaccattgcattgttctcatatcatgaaaagaagactacttttcagatatcaattctgggtgagatcggtatga 29124193  T
Q  154 aggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcggagtaggta 222  Q
    |||| || |||||||| ||||||| | | |||   ||| |||| ||||| |||||||| ||||| ||||    
T  29124194 aggaatcatggaccaagctcttcactatgggaccattgccttgtgttgatcgtcctattggagtgggta 29124262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 34281821 - 34282027
Alignment:
Q  11 cataccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagac 110  Q
    ||||||| || || ||||||||||||| ||| || |  ||  ||||| ||||||||  ||||| ||||||| ||| |||||||||||||||| | ||||     
T  34281821 catacccccagacgtagatgattgttttgatgttaaagcaaagtggaaaaacttggtggtgttaaatgggtacatagcattgatctcatatcgtaaagag 34281920  T
Q  111 acgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtccta 210  Q
    || | || |||||   |||||||||||||| ||   ||| | || || ||||||| ||||||||| || ||||||  |||| ||| ||||||||||||||    
T  34281921 acaagtacttttcgtgtatcaattttgggtcaactcggtttcaaagaatcgtggatcaaactctttatggttggaccgttgccttacgttgagcgtccta 34282020  T
Q  211 tcggagt 217  Q
    |||||||    
T  34282021 tcggagt 34282027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 34258428 - 34258303
Alignment:
Q  12 ataccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagaca 111  Q
    |||||||||||| | ||||||||||| ||| || |  ||  ||||||||||||||| ||||| ||||||| |||||| ||  |||||||| ||||| | |    
T  34258428 ataccctcatacgttgatgattgttttgatgttaaagcaaagtggataaacttggcggtgttaaatgggttcattgccttactctcatataatgaaaaaa 34258329  T
Q  112 cgactaattttcacatatcaattttg 137  Q
    | || | |||||||||||||||||||    
T  34258328 ctacaacttttcacatatcaattttg 34258303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 29137227 - 29137331
Alignment:
Q  53 gtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtata 152  Q
    ||||||||||||||  ||||| |||  ||||||||||||||| |||||||||||| | | | ||| ||||||  |||| ||||||||||||  ||||||     
T  29137227 gtggataaacttggtggtgttaaatttgtccattgcattgatatcatatcatgaaaagatggctacttttcatgtatctattttgggtgaagttggtatg 29137326  T
Q  153 aagga 157  Q
    |||||    
T  29137327 aagga 29137331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 25520113 - 25520027
Alignment:
Q  54 tggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtg 141  Q
    |||||||| ||||  ||||| ||| |||||||||| ||||||||| |||||||| | | || || |||||||||||||||||| ||||    
T  25520113 tggataaaattggtggtgttaaataggtccattgcgttgatctcacatcatgaaaatatgatta-ttttcacatatcaattttaggtg 25520027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 19697569 - 19697525
Alignment:
Q  89 attgatctcatatcatgaagacacgactaattttcacatatcaat 133  Q
    ||||||||||| |||||| || ||||||| |||||||||||||||    
T  19697569 attgatctcatttcatgatgagacgactacttttcacatatcaat 19697525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 25319437 - 25319361
Alignment:
Q  58 taaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaatt 134  Q
    |||||||||  ||||| |||||||   |||| |||||||||||||||||| | | ||||| ||||||| ||||||||    
T  25319437 taaacttggtggtgttaaatgggtatgttgctttgatctcatatcatgaaaagatgactacttttcacgtatcaatt 25319361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 25528950 - 25528826
Alignment:
Q  53 gtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtata 152  Q
    ||||||||| ||||  ||||  ||| |||||||||| ||||||| |||||||||| | |  |||| || ||||||||||||||| | ||||  || |||     
T  25528950 gtggataaatttggtggtgtcaaataggtccattgctttgatctaatatcatgaaaatataactacttatcacatatcaattttagatgaagctgatatg 25528851  T
Q  153 aaggagtcgtggaccaaactcttca 177  Q
    ||||| | ||||| || ||||||||    
T  25528850 aaggaatggtggaacatactcttca 25528826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 26149130 - 26149054
Alignment:
Q  58 taaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaatt 134  Q
    |||||||||  ||||| |||||||   |||| |||||||||||||||||| | | ||||| ||||||| ||||||||    
T  26149130 taaacttggtggtgttaaatgggtatgttgctttgatctcatatcatgaaaagatgactacttttcacgtatcaatt 26149054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 42446242 - 42446442
Alignment:
Q  12 ataccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagaca 111  Q
    ||||||||| ||||||||| ||||||| || ||     || |||||||||||||| |||||| || | ||||||||| |||||||||| ||||||| | |    
T  42446242 ataccctcagacttagatggttgtttctatgttggagaatcgtggataaacttggttgtgttaaacgagtccattgccttgatctcatttcatgaaaaga 42446341  T
Q  112 cgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctat 211  Q
    || ||  |||||||||||||||||||||||||  || ||| ||||| || |||||||||||| |||||||||||  ||||  ||| ||||||||||||||    
T  42446342 cggctt-ttttcacatatcaattttgggtgaacttgctatcaaggaatcatggaccaaactcgtcattgttggaccgttgcattgtgttgagcgtcctat 42446440  T
Q  212 cg 213  Q
    ||    
T  42446441 cg 42446442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 16400 - 16194
Alignment:
Q  11 cataccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagac 110  Q
    |||||||||| |||||||||||||||| ||| || |  |||  ||||||||||||||   ||| |||| || ||||||||||||||| |||||||||       
T  16400 cataccctcaaacttagatgattgttttgatgttgaagcatcatggataaacttggcacggttaaatgagtgcattgcattgatctcttatcatgaacca 16301  T
Q  111 acgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtccta 210  Q
    | ||||| |||||||||||||||||||||||||  |||||  ||||| || |||| ||| ||||||| | |||||   ||||||||||||  | ||||||    
T  16300 aggactacttttcacatatcaattttgggtgaaattggtaagaaggaatcatggatcaatctcttcactattggaccattgtcttgcgttaggtgtccta 16201  T
Q  211 tcggagt 217  Q
    |||||||    
T  16200 tcggagt 16194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 100 - 306
Alignment:
Q  11 cataccctcatacttagatgattgtttcgatcttcacacattgtggataaacttggctgtgtttaatgggtccattgcattgatctcatatcatgaagac 110  Q
    |||||||||| |||||||||||||||| ||| || |  |||  ||||||||||||||   ||| |||| || ||||||||||||||| ||||||| |       
T  100 cataccctcaaacttagatgattgttttgatgttgaagcatcctggataaacttggcatggttaaatgagtgcattgcattgatctcttatcatgtacca 199  T
Q  111 acgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtccta 210  Q
    | ||||| |||||||||||||||||||||||||  ||| |  || || || |||||||| | ||||| | |||||   |||||||||||||||  |||||    
T  200 aggactacttttcacatatcaattttgggtgaaattggaaagaatgaatcatggaccaatcacttcactattggaccattgtcttgcgttgagtttccta 299  T
Q  211 tcggagt 217  Q
    |||||||    
T  300 tcggagt 306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 33539 - 33436
Alignment:
Q  114 actaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcg 213  Q
    |||| |||| ||||| ||||||||||||||   || || ||||| ||||||||||||||||||| |||||||  |||||||||||||||||||||||||     
T  33539 actacttttgacatagcaattttgggtgaactcggcattaaggaatcgtggaccaaactcttcactgttggaccgttgtcttgcgttgagcgtcctatca 33440  T
Q  214 gagt 217  Q
    ||||    
T  33439 gagt 33436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 39890 - 39787
Alignment:
Q  114 actaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttggagtgttgtcttgcgttgagcgtcctatcg 213  Q
    |||| |||||||||| ||||||||||||||   || || ||||| ||||||| ||||||||| | |||||||  ||||||||||||||||||||||||||    
T  39890 actacttttcacatagcaattttgggtgaactcggcattaaggaatcgtggatcaaactctttactgttggaccgttgtcttgcgttgagcgtcctatcg 39791  T
Q  214 gagt 217  Q
    ||||    
T  39790 gagt 39787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 10486 - 10546
Alignment:
Q  119 ttttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcatt 179  Q
    |||||||||||||||||||||||||  |||| | |||||||| ||||| ||||||||||||    
T  10486 ttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactcttcatt 10546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 184
Target Start/End: Complemental strand, 33650 - 33551
Alignment:
Q  85 ttgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttgg 184  Q
    |||||||||||||| |  ||| ||| | ||||| ||||||||| || ||||||||||||  |||| | |||||||| ||||| |||||||| ||| ||||    
T  33650 ttgcattgatctcaaactatgtagaaatgactacttttcacatttctattttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgg 33551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 32642902 - 32643026
Alignment:
Q  61 acttggctgtgtttaatgggtccattgcattgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaatatggtataaaggagtc 160  Q
    ||||||| ||||| ||||| |||||||| |||||| ||||||| ||| | | | ||| |||| |||||||||||||| ||||||    | | ||||| ||    
T  32642902 acttggcggtgttaaatggatccattgcgttgatcacatatcaagaacaaatggctacttttaacatatcaattttgagtgaattaactgtgaaggaatc 32643001  T
Q  161 gtggaccaaactcttcattgttgga 185  Q
     |||| |||||||||||||||||||    
T  32643002 atggatcaaactcttcattgttgga 32643026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 42413999 - 42414063
Alignment:
Q  121 ttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttgga 185  Q
    ||||||| ||||||||||| |||| |||| |||||||||| ||||| |||||||| |||||||||    
T  42413999 ttcacatttcaattttgggcgaatttggtgtaaaggagtcatggactaaactctttattgttgga 42414063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 39724635 - 39724570
Alignment:
Q  120 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttgga 185  Q
    |||||||||||||||||||| |||   |||||||| || || ||||| ||||||||||||||||||    
T  39724635 tttcacatatcaattttgggggaactcggtataaaagaatcatggactaaactcttcattgttgga 39724570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 15807783 - 15807722
Alignment:
Q  120 tttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgt 181  Q
    ||||||||||||||||||||||||  |||  | || ||||| |||||||||||||| |||||    
T  15807783 tttcacatatcaattttgggtgaagttgggttcaaagagtcatggaccaaactctttattgt 15807722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 42637425 - 42637357
Alignment:
Q  109 acacgactaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttca 177  Q
    |||| |||| |||||||||||||||||||||||||   ||  | ||||| || ||||||||||||||||    
T  42637425 acacaactacttttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactcttca 42637357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 5162455 - 5162519
Alignment:
Q  119 ttttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttg 183  Q
    |||||||||||||||||||||||||  |||| | ||||| || |||| ||||||||||| |||||    
T  5162455 ttttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactcttcactgttg 5162519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 368801 - 368872
Alignment:
Q  114 actaattttcacatatcaattttgggtgaatatggtataaaggagtcgtggaccaaactcttcattgttgga 185  Q
    |||| |||||||||||||||| | ||||||  |||| | ||||| || |||| |||||||||||||||||||    
T  368801 actacttttcacatatcaattcttggtgaaattggtgtgaaggaatcatggatcaaactcttcattgttgga 368872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 7429075 - 7429022
Alignment:
Q  90 ttgatctcatatcatgaagacacgactaattttcacatatcaattttgggtgaa 143  Q
    ||||| |||||| ||||||| | ||||| ||||||||||||| |||||||||||    
T  7429075 ttgatttcatattatgaagagaagactacttttcacatatcagttttgggtgaa 7429022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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