View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5851_low_4 (Length: 258)
Name: NF5851_low_4
Description: NF5851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5851_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 10035912 - 10036145
Alignment:
| Q |
11 |
cataggtgagaagctcatggttttcgctagcatataggcgccttccttatcacgtaggcaaattctgatacaggtacggttctgcacaggcgaaaatgag |
110 |
Q |
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| T |
10035912 |
cataggtgagaagctcatggttttcgctagcatataggcgccttccttatcacgtaggcaaattctgatacaggtacggttctgcacaggcgaaaatgag |
10036011 |
T |
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| Q |
111 |
gcatcaatgttgcatttaactcgaccaggaagaggtatctgccatcgtatcaactctataggatctggtacaagcattttctcctgaacagaagctggtg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10036012 |
gcatcaatgttgcatttaactcgaccaggaagaggtatctgccatcgtatcaactctataggatctggtacaagcattttctcctgaacagcagctggtg |
10036111 |
T |
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| Q |
211 |
ggtgcgtgacagctgcagcatgaccaatttcttg |
244 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
10036112 |
ggtgcgtgacagctgcagcatgaccaatttcttg |
10036145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 10096280 - 10096524
Alignment:
| Q |
11 |
cataggtgagaagctcatggttttcgctagcatataggcgccttccttatcacgtaggcaaattctgatacaggtacggttctgcacaggc--------- |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
10096280 |
cataggtgagaagctcatggttttcgctagcatataggcgccttccttatcacgtaggcaaattctgaaacaggtaccgttctgcacaggcgaaaatgag |
10096379 |
T |
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| Q |
102 |
--gaaaatgaggcatcaatgttgcatttaactcgaccaggaagaggtatctgccatcgtatcaactctataggatctggtacaagcattttctcctgaac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10096380 |
gcgaaaatgaggcatcaatgttgcatttaactcgaccaggaagaggtatctgccatcgtatcaactctataggatctggtacaagcattttctcctgaac |
10096479 |
T |
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| Q |
200 |
agaagctggtgggtgcgtgacagctgcagcatgaccaatttcttg |
244 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10096480 |
agcagctagtgggtgcgtgacagctgcagcatgaccaatttcttg |
10096524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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