View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852-Insertion-11 (Length: 346)
Name: NF5852-Insertion-11
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852-Insertion-11 |
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| [»] chr5 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 37850091 - 37850425
Alignment:
| Q |
13 |
caacctccgcgagttacaacttggtggaaatttgtttggaggcaaaattcct-cgatcgattttattattgcgcaatctgttctatggattgaatcttag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37850091 |
caacctccgcgagttacaacttggtggaaatttgtttggaggcaaaattcctgcgatcgattttattattgcgcaatctgttctatggattgaatcttag |
37850190 |
T |
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| Q |
112 |
tgctaatggattgaaaggtgacattccttcaggaattgactggataggactgcagcaattgcaaagtctagatatatccttgaacaatttaacaggaagc |
211 |
Q |
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| T |
37850191 |
tgctaatggattgaaaggtgacattccttcaggaattgactggataggactgcagcaattgcaaagtctagatatatccttgaacaatttaacaggaagc |
37850290 |
T |
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| Q |
212 |
atagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaaggtctaatgaatttattgaatt |
311 |
Q |
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| T |
37850291 |
atagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaaggtctaatgaatttattgaatt |
37850390 |
T |
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| Q |
312 |
cctcaccatcatcattcatgggtaatcctctccta |
346 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
37850391 |
cctcaccatcatcattcatgggtaatcctctccta |
37850425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 37836719 - 37837046
Alignment:
| Q |
13 |
caacctccgcgagttacaacttggtggaaatttgtttggaggcaaaattcctcgatcgattttattattgcgcaatctgttctatggattgaatcttagt |
112 |
Q |
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| T |
37836719 |
caacctccgcgagttacatcttggtggaaatttgtttggaggcaaaattcctcgatcgatgggaacattgcataatttgttctatggactgaatctgagt |
37836818 |
T |
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| Q |
113 |
gctaatggattgaaaggtgacattccttcaggaattgactggataggactgcagcaattgcaaagtctagatatatccttgaacaatttaacaggaagca |
212 |
Q |
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| T |
37836819 |
ggtaatggattgacaggtggcattccttcggaaattggtttactcggactgc------tgcaaagtctagatatatccttaaacaatttaacaggaagca |
37836912 |
T |
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| Q |
213 |
tagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaaggtctaatgaatttattgaattc |
312 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||||| |
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| T |
37836913 |
tagatgctcttggaggtcttgtttcattaattgaggtcaatatttctttcaatctcttcaatggatctgtaccaacaggtctaatgaggttattgaattc |
37837012 |
T |
|
| Q |
313 |
ctcaccatcatcattcatgggtaatcctctccta |
346 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
37837013 |
ctcaccatcatcattcatgggtaatcctttccta |
37837046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 37842334 - 37842662
Alignment:
| Q |
9 |
ttagcaacctccgcgagttacaacttggtggaaatttgtttggaggcaaaattcctcgatcgattttattattgcgcaatctgttctatggattgaatct |
108 |
Q |
| |
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|||| ||||| || |||||||||||||||||||||||| ||||||| |||||||||||||||||| || |||||| ||| |||||||||| |||||| | |
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| T |
37842334 |
ttagaaaccttcgtgagttacaacttggtggaaatttgcttggaggaaaaattcctcgatcgattgtaacattgcgtaatttgttctatgggttgaattt |
37842433 |
T |
|
| Q |
109 |
tagtgctaatggattgaaaggtgacattccttcaggaattgactggataggactgcagcaattgcaaagtctagatatatccttgaacaatttaacagga |
208 |
Q |
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| T |
37842434 |
gagtgctaatggattgataggtggcattcctgtagaaattcagaaactaaaaatgc------tgcaaagtctggatatatccttgaacaatttgacggga |
37842527 |
T |
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| Q |
209 |
agcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaaggtctaatgaatttattga |
308 |
Q |
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|||||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||| |
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| T |
37842528 |
agcatagacgcacttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacaggtctaatgaagttattga |
37842627 |
T |
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| Q |
309 |
attcctcaccatcatcattcatgggtaatcctctc |
343 |
Q |
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| T |
37842628 |
attcctcaccatcatcattcatgggtaatcctctc |
37842662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 37831011 - 37831342
Alignment:
| Q |
9 |
ttagcaacctccgcgagttacaacttggtggaaatttgtttggaggcaaaattcctcgatcgattttattattgcgcaatctgttctatggattgaatct |
108 |
Q |
| |
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|||||||||| || ||||||||||| |||||||||||| |||||||| |||||||||||| | | ||||| ||||||||||||||||||||||| |
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| T |
37831011 |
ttagcaaccttcgtgagttacaactaggtggaaatttgcttggaggcgaaattcctcgatggttggggacattgcataatctgttctatggattgaatct |
37831110 |
T |
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| Q |
109 |
tagtgctaatggattgaaaggtgacattccttcaggaattgactggataggactgcagcaattgcaaagtctagatatatccttgaacaatttaacagga |
208 |
Q |
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||| |||||||||| | ||| ||||||||||| ||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
37831111 |
gagttctaatggattaacaggcagcattccttcagaaattgggaagctaggactgc------tgcaaagtctggatatatccttgaacaatttaacagga |
37831204 |
T |
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| Q |
209 |
agcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaaggtctaatgaatttattga |
308 |
Q |
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|||||| |||| |||| |||||||||| |||| ||| ||||| |||||| |||||||||| ||||||||||||||| |||||||||||| ||| ||| |
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| T |
37831205 |
agcatatatgctcttgaaagtcttgtttcgttaactgatatcaatgtttcttacaatctcttcaatggttctgtaccaacaggtctaatgaagttactga |
37831304 |
T |
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| Q |
309 |
attcctcaccatcatcattcatgggtaatcctctccta |
346 |
Q |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
37831305 |
attcctcaccatcatcattcatgggtagtcctctccta |
37831342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 199 - 343
Target Start/End: Original strand, 28089388 - 28089532
Alignment:
| Q |
199 |
tttaacaggaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaaggtctaatg |
298 |
Q |
| |
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|||| |||||| ||| ||||| ||||| | |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| || ||||||| |
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| T |
28089388 |
tttagcaggaatcatcgatgctcttggagatcttgtttcattaattgaggtcaatatttcttacaatctcttcaatggttttgtaccattagctctaatg |
28089487 |
T |
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| Q |
299 |
aatttattgaattcctcaccatcatcattcatgggtaatcctctc |
343 |
Q |
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| T |
28089488 |
agtttattgaattcctcaccatcatcattcatgggcaatcctctc |
28089532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 36865462 - 36865793
Alignment:
| Q |
9 |
ttagcaacctccgcgagttacaacttggtggaaatttgtttggaggcaaaattcctcgatcgattttattattgcgcaatctgttctatggattgaatct |
108 |
Q |
| |
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|||||||||| | |||||||||||||||||||||| ||| |||||||||||||||||||| || | ||||| |||||||| |||||||||||||| |
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| T |
36865462 |
ttagcaaccttagtgagttacaacttggtggaaattcgttcggaggcaaaattcctcgatcaatgggaacattgcataatctgttttatggattgaatct |
36865561 |
T |
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| Q |
109 |
tagtgctaatggattgaaaggtgacattccttcaggaattgactggataggactgcagcaattgcaaagtctagatatatccttgaacaatttaacagga |
208 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||| ||||| | ||||||||| ||||||| | |||||||||||||||||||| |||||| |
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| T |
36865562 |
gagtgataatggattgacaggtggtattccttcagaaattgggatgctaggactgc------tgcaaagcttggatatatccttgaacaatttgacagga |
36865655 |
T |
|
| Q |
209 |
agcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctcttccatggttctgtaccaaaaggtctaatgaatttattga |
308 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||| | ||||||| | ||||||| |
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| T |
36865656 |
agcatagatgctcttgaaggtcttgtttcattaattgaggtcaatatttattacaatcttttcaatggttctgtaccaacacgtctaattaggttattga |
36865755 |
T |
|
| Q |
309 |
attcctcaccatcatcattcatgggtaatcctctccta |
346 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
36865756 |
attcctcaccgtcatcgttcatgggtaatcctctccta |
36865793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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