View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852-Insertion-13 (Length: 131)
Name: NF5852-Insertion-13
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852-Insertion-13 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 31295232 - 31295110
Alignment:
| Q |
9 |
cttcaaacacaaacttggattcaccaatctgcaattcaagaatccgaggaacatcggtttcgtctactttggctgccaaagataagcaagcaacagccaa |
108 |
Q |
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| T |
31295232 |
cttcaaacacaaacttggattcaccaatctgcaattcaagaatccgaggaacatcggtttcgtctactttggctgccaaagataagcaagcaacagccaa |
31295133 |
T |
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| Q |
109 |
caattgcattgaccaatctcttc |
131 |
Q |
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| T |
31295132 |
caattgcattgaccaatctcttc |
31295110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 31301197 - 31301144
Alignment:
| Q |
9 |
cttcaaacacaaacttggattcaccaatctgcaattcaagaatccgaggaacat |
62 |
Q |
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| T |
31301197 |
cttcaaacacaaacttggattcactaatctgcaaatcaaaattcggaggaacat |
31301144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 46342071 - 46342165
Alignment:
| Q |
37 |
ctgcaattcaagaatccgaggaacatcggtttcgtctactttggctgccaaagataagcaagcaacagccaacaattgcattgaccaatctcttc |
131 |
Q |
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| T |
46342071 |
ctgcaaatcaagaggctgaggaacagcagtttcctctactttagctgccaaagataagcaagctacagccaacaattgcattgtccaagctcttc |
46342165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 46341935 - 46341967
Alignment:
| Q |
9 |
cttcaaacacaaacttggattcaccaatctgca |
41 |
Q |
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| T |
46341935 |
cttcaaatacaaacttggattcaccaatctgca |
46341967 |
T |
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