View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852-Insertion-2 (Length: 1094)
Name: NF5852-Insertion-2
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 767; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 8 - 894
Target Start/End: Complemental strand, 36360516 - 36359632
Alignment:
| Q |
8 |
aaaattgttaatgttagagattatggagctaaaggggatggtcatacggatgacacacaggtataataaactcttaatatgtagcttaaaaatcataata |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
36360516 |
aaaattgttaatgttagagattatggagctaaaggggatggtcatacggatgacacacaggtataataaactcttaatatatagcttaaaaatcaaaata |
36360417 |
T |
|
| Q |
108 |
tatacgaactattgataaatttcatatttaatattttgtatgcccatgcgttactaatttggttttctattaacatcaaatgattttctnnnnnnntaac |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
36360416 |
tatacgaactattgataaatttcatatttaatattttgtatgcccatacgatactaatttggttttctattaacatcaa-tgattttctaaaaaaataac |
36360318 |
T |
|
| Q |
208 |
ttaaattttcctataattggacatataataatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagggcaatcagttttagtggcacctca |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36360317 |
ttaaattttcctataattggacatataataatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagggcaatcagttttagtggcacctca |
36360218 |
T |
|
| Q |
308 |
agattataattatctactcaaaccaatcagattctctggtccttgcaaatctaacatatcagttcaggtcagctacattatatattaagctagtgattaa |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36360217 |
agattataattatctactcaaaccaatcagattctctggtccttgcaaatctaacatatcagttcaggttagctacattatatattaagctagtgattaa |
36360118 |
T |
|
| Q |
408 |
ttaactaattagttcttccttttttaagctccatatttttaagtaaattataatctcaaaaagtaacttttttcaaaaatttatttgtaagatatctgga |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36360117 |
ttaactaattagttcttccttttttaagctccatatttttaagtaaattataatctcaaaaagtaacttttttcaaaaatttatttgtaagatatctgga |
36360018 |
T |
|
| Q |
508 |
agtcttgaagcatcagataatccatcaggttacagtgaagatcaaagacattggcttgtatttatggaagttcaacaactattagttaatggtggtggaa |
607 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36360017 |
agtcttgaagcatcagataatccatcagattacagtgaagatcaaagacattggcttgtatttgtggaagttcaacaactattagttaatggtggtggaa |
36359918 |
T |
|
| Q |
608 |
ccatcgatggaaaaggagacatatggtggcaaaactcatgcaaaaggaacaaaaagaaagtaagatatcacaaacaacgtcccaatattttaatcaagtc |
707 |
Q |
| |
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||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36359917 |
ccatcgatggaaaaggaaacatatggtgggaaaactcatgcaaaaggaacaaaaagaaagtaagatatcacaaataacgtcccaatattttaatcaagtc |
36359818 |
T |
|
| Q |
708 |
aattatgaatcaatgaatctatataataatcatattcaaattaattatgaccaaccttttgatgaatcttctttctttttgcagccttgcaaggatgctc |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36359817 |
aattatgaatcaatgaatctatataataatcatattcaaattaattatgaccaacctttttatgaatcttctttctttttgcagccttgcaaggatgctc |
36359718 |
T |
|
| Q |
808 |
caacggtatgtatacatagctctacctnnnnnnnnnttcaacaatttagtccgtttagtcaaatctcaatcgttaaatttaaattga |
894 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
36359717 |
caacggtatgtatacatagctctacctaaaaaaaaa-tcaacaatttaatatgtttagtcaaatctcaatcgttaaatttaaattga |
36359632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 236 - 894
Target Start/End: Complemental strand, 36349031 - 36348370
Alignment:
| Q |
236 |
taatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagg------gcaatcagttttagtggcacctcaagattataattatctactcaaa |
329 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||||||||| ||||| | || ||||||| || |||||||||||| ||| ||||||||||||| |
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| T |
36349031 |
taatattcaggcattcgagaaggcttgggaagcagtatgttcttcaggaggaggggaagcagtttttgttgcacctcaagataatatttatctactcaaa |
36348932 |
T |
|
| Q |
330 |
ccaatcagattctctggtccttgcaaatctaacatatcagttcaggtcagctacattatatattaagctagtgattaattaactaattagttcttccttt |
429 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||| || ||||| |||||||||| | | |
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| T |
36348931 |
ccaatcagattctctggtccttgcaaatctaagatatcattccaggtcagttacattata-----------------atgaactatttagttcttcatat |
36348849 |
T |
|
| Q |
430 |
tttaagctccatatttttaagtaaattataat----------ctcaaaaagtaacttttttcaaaaatttatttgtaagatatctggaagtcttgaagca |
519 |
Q |
| |
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|||||||| || ||||||||||||||||||| |||||||||||| ||||||| |||||||| |||| ||||||||||| ||| |||| |
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| T |
36348848 |
tttaagcttcacctttttaagtaaattataattaattataatctcaaaaagtaatttttttcgaaaatttaattgtcagatatctggagttctcatagca |
36348749 |
T |
|
| Q |
520 |
tcagataatccatcaggttacagtgaagatcaaagacattggcttgtatttatggaagttcaacaactattagttaatggtggtggaaccatcgatggaa |
619 |
Q |
| |
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||| |||||||||||| ||| ||| |||||| | ||||||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||| |
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| T |
36348748 |
tcaaataatccatcagattatagtaaagatccaggacattggcttgtatttgccaaagttcaacaactagtagttaatggtggtggaaccctagatggaa |
36348649 |
T |
|
| Q |
620 |
aaggagacatatggtggcaaaactcatgcaaaaggaacaaaaagaaagtaagatatcacaaacaacgtcccaatattttaatcaagtcaattatgaatca |
719 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
36348648 |
aaggaaccatatggtgggaaaactcatgcaaaaggaacaaaaataaagtaagatatcacaaataacgtcccaatgttttaatcaagtcaattatgcatca |
36348549 |
T |
|
| Q |
720 |
atgaatctatataa-taatcatattcaaatta---attatgaccaaccttttgatgaat--cttctttctttttgcagccttgcaaggatgctccaacgg |
813 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||||||||||| ||| || | ||| ||| ||| | ||||||||||||||||||||||||| |
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| T |
36348548 |
atgaatctatataattaatcatattcaaattaattattatgaccaatcttatgcctcttcacttttttttttcttcagccttgcaaggatgctccaacgg |
36348449 |
T |
|
| Q |
814 |
tatgtatacatagctctacctnnnnnnnnnttcaacaatttagtccgtttagtcaaatctcaatcgttaaatttaaattga |
894 |
Q |
| |
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||||||||||||| ||||||| || |||||||||||| ||||||||||||||| ||||| |||||||||||| |
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| T |
36348448 |
tatgtatacatagttctacctacattttc--tcgacaatttagtccatttagtcaaatctcagtcgttgaatttaaattga |
36348370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 36349182 - 36349119
Alignment:
| Q |
9 |
aaattgttaatgttagagattatggagctaaaggggatggtcatacggatgacacacaggtata |
72 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||||| | || ||||||||||||||||| |
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|
| T |
36349182 |
aaatttttaatgtcagtgattatggagctaaaggggatggtaaaactgatgacacacaggtata |
36349119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 592 - 662
Target Start/End: Complemental strand, 21185618 - 21185548
Alignment:
| Q |
592 |
gttaatggtggtggaaccatcgatggaaaaggagacatatggtggcaaaactcatgcaaaaggaacaaaaa |
662 |
Q |
| |
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||||| |||||||||||||| ||||||| ||| | || |||||||| ||||||||||||| |||||||| |
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|
| T |
21185618 |
gttaaaggtggtggaaccattcatggaaatggaaatatttggtggcagaactcatgcaaaaccaacaaaaa |
21185548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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