View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5852-Insertion-3 (Length: 641)

Name: NF5852-Insertion-3
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5852-Insertion-3
NF5852-Insertion-3
[»] chr3 (10 HSPs)
chr3 (178-345)||(46088300-46088465)
chr3 (393-519)||(25280390-25280517)
chr3 (541-641)||(25280546-25280649)
chr3 (67-139)||(46088224-46088301)
chr3 (393-467)||(30188556-30188631)
chr3 (393-451)||(10773255-10773313)
chr3 (408-472)||(16898638-16898702)
chr3 (393-503)||(7937424-7937534)
chr3 (393-488)||(30045226-30045321)
chr3 (393-450)||(29685646-29685703)
[»] chr8 (5 HSPs)
chr8 (393-641)||(29934517-29934771)
chr8 (393-490)||(1219163-1219260)
chr8 (393-490)||(19712711-19712808)
chr8 (393-472)||(39143310-39143389)
chr8 (400-498)||(39919305-39919403)
[»] chr5 (12 HSPs)
chr5 (393-641)||(13390353-13390605)
chr5 (541-641)||(16119836-16119939)
chr5 (407-498)||(18149376-18149467)
chr5 (393-498)||(21825177-21825283)
chr5 (393-472)||(1585467-1585546)
chr5 (543-641)||(20251657-20251758)
chr5 (393-451)||(20251512-20251570)
chr5 (393-451)||(26397287-26397345)
chr5 (393-451)||(37414638-37414696)
chr5 (393-465)||(17696035-17696107)
chr5 (393-498)||(23264112-23264217)
chr5 (609-641)||(37268147-37268179)
[»] chr4 (16 HSPs)
chr4 (393-522)||(28709112-28709241)
chr4 (541-641)||(28708983-28709085)
chr4 (393-498)||(42396698-42396803)
chr4 (393-498)||(18430433-18430538)
chr4 (393-478)||(52762920-52763005)
chr4 (393-451)||(2632752-2632810)
chr4 (393-467)||(26893348-26893422)
chr4 (393-446)||(17186293-17186346)
chr4 (541-641)||(22322558-22322661)
chr4 (393-451)||(44546646-44546704)
chr4 (393-485)||(20177379-20177472)
chr4 (393-446)||(21141948-21142001)
chr4 (393-446)||(53084603-53084656)
chr4 (393-445)||(13159700-13159752)
chr4 (609-641)||(44546442-44546474)
chr4 (393-445)||(46191196-46191248)
[»] chr7 (9 HSPs)
chr7 (393-498)||(38889896-38890001)
chr7 (407-498)||(13427964-13428055)
chr7 (393-484)||(43656110-43656200)
chr7 (393-472)||(21120582-21120661)
chr7 (393-460)||(45140134-45140201)
chr7 (393-451)||(22681442-22681500)
chr7 (419-472)||(29352721-29352773)
chr7 (609-641)||(7567168-7567200)
chr7 (393-472)||(20398862-20398941)
[»] chr6 (5 HSPs)
chr6 (395-498)||(25026737-25026840)
chr6 (393-498)||(18489707-18489812)
chr6 (541-638)||(5195386-5195486)
chr6 (393-498)||(16477627-16477733)
chr6 (393-446)||(5675492-5675545)
[»] chr2 (9 HSPs)
chr2 (395-498)||(26438319-26438422)
chr2 (426-498)||(11123638-11123710)
chr2 (393-469)||(18556065-18556141)
chr2 (393-451)||(3376152-3376210)
chr2 (393-455)||(12915772-12915834)
chr2 (393-446)||(28157726-28157779)
chr2 (541-641)||(30515923-30516026)
chr2 (609-641)||(45468367-45468399)
chr2 (609-641)||(45701404-45701436)
[»] chr1 (3 HSPs)
chr1 (393-460)||(7637639-7637706)
chr1 (609-641)||(20819822-20819854)
chr1 (393-451)||(20819604-20819662)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 7e-63; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 178 - 345
Target Start/End: Original strand, 46088300 - 46088465
Alignment:
Q  178 atatctgaatttttactcaaaaatt-cactgacaatttagtcggtaatgatatatcatttgatgtgactacgaacagacttgaaattgaccggttggata 276  Q
    ||||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46088300 atatctgaatttttactcataaatttcaccgacaatttagtcagtaatgatatatcatttgatgtgactacgaacagacttgaaattgaccggttggaga 46088399  T
Q  277 gtgaatcataaatattactaacatcaagcaattaccacatttaaaatataagaaatgctaacttaaaag 345  Q
    |||||||||| ||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46088400 gtgaatcatagatat---taacatcaagcaattaccacatttaaaatatgagaaatgctaacttaaaag 46088465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 393 - 519
Target Start/End: Original strand, 25280390 - 25280517
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggt-ctgatacaaacaacag 491  Q
    |||||| ||||| ||||||||| ||||||||||   ||||||| ||||||||||||||| || |||||||||||| | ||||| |||||||||||||||     
T  25280390 acaaatcaaaatggaatatattactcaaaagaggaatgattcaccccgcacaagatgtgctagcgtgatgaatcacccaaggtcctgatacaaacaacat 25280489  T
Q  492 gcacctatcaaggatacccgctcccaag 519  Q
    |||||||||||||| |||||||||||||    
T  25280490 gcacctatcaaggaaacccgctcccaag 25280517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 541 - 641
Target Start/End: Original strand, 25280546 - 25280649
Alignment:
Q  541 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagaggaacaa---ttgacgaaagccataaaaaagaattcaac 637  Q
    ||||||||| ||||||||| ||||||||||||||||  |||| || ||| ||||||||||||||||||   ||||||| ||||||||||||||||||| |    
T  25280546 ttacatgatgcccatacaaagtagtgggtatctccatcaatcatgaaagccaaacgaaagaggaacaacatttgacgacagccataaaaaagaattcacc 25280645  T
Q  638 ttca 641  Q
    ||||    
T  25280646 ttca 25280649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 46088224 - 46088301
Alignment:
Q  67 tattcgtaccacgtattttaacttcatagcatgtaattgaggccaatattagg-----actaaaagaagtactaatat 139  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||     ||||||||||||||||||||    
T  46088224 tattcgtatcacgtattttaacttcatagcatataattgaggccaatattagggtaaaactaaaagaagtactaatat 46088301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 467
Target Start/End: Complemental strand, 30188631 - 30188556
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaa-cgtgatgaatca 467  Q
    |||||| |||||||||||||||||||||| || |||||||||| ||||||| ||||||| |||  |||||||||||    
T  30188631 acaaataaaaatagaatatattgctcaaacgaaaggtgattcaccccgcactagatgtgctaagagtgatgaatca 30188556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 451
Target Start/End: Complemental strand, 10773313 - 10773255
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtg 451  Q
    |||||| ||||| | ||||||||||||||||| |||||||||| |||||||||| ||||    
T  10773313 acaaatcaaaatgggatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtg 10773255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 472
Target Start/End: Complemental strand, 16898702 - 16898638
Alignment:
Q  408 atatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaa 472  Q
    ||||||||||||||||  | ||||||||  |||||||| ||||| ||| ||||||||||||||||    
T  16898702 atatattgctcaaaagcaaagtgattcactccgcacaaaatgtgctaaagtgatgaatcatctaa 16898638  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 503
Target Start/End: Complemental strand, 7937534 - 7937424
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaag-agaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacag 491  Q
    |||||| ||||| |||| ||||||||||| | |||| ||||||  || ||||||| |||| ||| ||||||||||| | || ||||| ||||||| ||||    
T  7937534 acaaatcaaaatggaatctattgctcaaaggcagag-tgattccccctgcacaaggtgtgctaaagtgatgaatcacccaaagtctgttacaaaccacag 7937436  T
Q  492 gcacctatcaag 503  Q
    ||||||| ||||    
T  7937435 gcacctaacaag 7937424  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 488
Target Start/End: Complemental strand, 30045321 - 30045226
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaa 488  Q
    |||||| ||||| | ||||||||||||||||| |||||| ||| || ||||||| ||||  || |||| ||| || |||| ||||| |||||||||    
T  30045321 acaaatcaaaatgggatatattgctcaaaagaaaggtgaatcaccctgcacaaggtgtgcaaaagtgaagaaacacctaaagtctgttacaaacaa 30045226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 29685703 - 29685646
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgt 450  Q
    |||||| ||||||||||||||||||||||| |   |||||||| || |||||||||||    
T  29685703 acaaatcaaaatagaatatattgctcaaaataatagtgattcaccctgcacaagatgt 29685646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 393 - 641
Target Start/End: Complemental strand, 29934771 - 29934517
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacagg 492  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||  | ||||||| ||||||||||||||    
T  29934771 acaaatcaaaatggaatatattgctcaaaagagaggtgattcaccccgcacaaggtgtgctaacgtgatgaatcgcccaaggtcttatacaaacaacagg 29934672  T
Q  493 cacctatcaaggatacccgctcccaaggag---nnnnnnnnnnnnnnnnnnttacatgatacccatacaaggtagtgggtatctccactaatcgtggaag 589  Q
    ||||||||||||||| ||||||||||||||                     ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29934671 cacctatcaaggatatccgctcccaaggagagaaaaaactataaaaaaaaattacatgatacccatacaaggtagtgggtatctccaccaatcgtggaag 29934572  T
Q  590 tcaaacgaaagagg---aacaattgacgaaagccataaaaaagaattcaacttca 641  Q
     |||||||||||||   |||| |||||||||||||||||||||||||||||||||    
T  29934571 ccaaacgaaagaggcacaacatttgacgaaagccataaaaaagaattcaacttca 29934517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 393 - 490
Target Start/End: Complemental strand, 1219260 - 1219163
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaaca 490  Q
    |||||| |||||  |||||||| ||||||| |||  ||||||| ||||||||||||||| ||||||||| ||||||| || |||||||||||||||||    
T  1219260 acaaatcaaaatgaaatatattactcaaaatagaattgattcaccccgcacaagatgtgctaacgtgataaatcatccaaagtctgatacaaacaaca 1219163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 393 - 490
Target Start/End: Complemental strand, 19712808 - 19712711
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaaca 490  Q
    |||||| ||||| ||||||||| ||||||| ||   || |||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||    
T  19712808 acaaatcaaaatggaatatattactcaaaaaaggaatggttcaccccgcacaagatgtgctaacgtgatgaatcatccaaagtctgatacaaacaaca 19712711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 472
Target Start/End: Complemental strand, 39143389 - 39143310
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaa 472  Q
    |||||| || |||| ||||||||||||||||  | |||||||| |||||||||| |||| ||| ||||||||||| ||||    
T  39143389 acaaatcaatataggatatattgctcaaaagcaaagtgattcaccccgcacaaggtgtggtaaagtgatgaatcacctaa 39143310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 498
Target Start/End: Original strand, 39919305 - 39919403
Alignment:
Q  400 aaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 498  Q
    ||||| ||||||||| ||||  | | |||| ||||| || ||||||| |||| |||  |||||||||| | || ||||| |||||||||||||||||||    
T  39919305 aaaatggaatatattactcaccaaaaaggtaattcaccctgcacaaggtgtgctaaaatgatgaatcacccaatgtctgttacaaacaacaggcaccta 39919403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 393 - 641
Target Start/End: Original strand, 13390353 - 13390605
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacagg 492  Q
    |||||| ||||| |||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||| || |||| ||||||||||||||||| |    
T  13390353 acaaatcaaaatggaatatatagctcaaaagagaagtgattcaccccgcacaagatgtgctaacgtgatgaaccacctaaagtctgatacaaacaacatg 13390452  T
Q  493 cacctatcaaggatacccgctcccaagga-gnnnnnnnnnnnnnnnnnnttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtc 591  Q
    ||||||||||||||||||||||||||| | |                  ||||||||||||||||||||||||||||||||| ||| ||||||| ||| |    
T  13390453 cacctatcaaggatacccgctcccaagaaggaaaaaaactaaaaaaaacttacatgatacccatacaaggtagtgggtatcttcaccaatcgtgaaagcc 13390552  T
Q  592 aaacgaaagaggaacaa---ttgacgaaagccataaaaaagaattcaacttca 641  Q
    ||||| |||||||||||   ||||||||||| |||||||||||||||||||||    
T  13390553 aaacggaagaggaacaacatttgacgaaagctataaaaaagaattcaacttca 13390605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 541 - 641
Target Start/End: Complemental strand, 16119939 - 16119836
Alignment:
Q  541 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagaggaacaa---ttgacgaaagccataaaaaagaattcaac 637  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||| || ||||||| ||||| |||||   |||||||| ||||||||||||||||||||    
T  16119939 ttacatgatacccatacaaagtagtggatatctccaccaatcgtgaaaatcaaacggaagagaaacaacatttgacgaaggccataaaaaagaattcaac 16119840  T
Q  638 ttca 641  Q
    ||||    
T  16119839 ttca 16119836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 18149376 - 18149467
Alignment:
Q  407 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 498  Q
    |||||||||||||||||  ||||| |||| |||||||||| |||| ||| ||| |||| || | || ||||||||||||||||| |||||||    
T  18149376 aatatattgctcaaaagtaaggtggttcaccccgcacaaggtgtgctaaagtggtgaaacacccaatgtctgatacaaacaacatgcaccta 18149467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 498
Target Start/End: Complemental strand, 21825283 - 21825177
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaag-agaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacag 491  Q
    |||||| ||||| |||||||||||||||||| | |||||||||| |||||||||| |||| ||| ||||  || || | || ||||| ||||||||| |     
T  21825283 acaaatcaaaatggaatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaagtgagaaaacacccaacgtctgttacaaacaaaaa 21825184  T
Q  492 gcaccta 498  Q
    |||||||    
T  21825183 gcaccta 21825177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 472
Target Start/End: Complemental strand, 1585546 - 1585467
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaag-agaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaa 472  Q
    |||||| ||||| |||||||||||||||||| ||| |||||||| |||| ||||| |||| ||| |||||||||| |||||    
T  1585546 acaaatcaaaattgaatatattgctcaaaagcaga-gtgattcaccccgtacaaggtgtgctaaagtgatgaatcctctaa 1585467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 641
Target Start/End: Original strand, 20251657 - 20251758
Alignment:
Q  543 acatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagaggaacaa---ttgacgaaagccataaaaaagaattcaactt 639  Q
    ||||||||||||||||| | | ||| || |||||| ||||||| ||  ||||||||| || |||||   ||||| |||||||||||||||| |||| |||    
T  20251657 acatgatacccatacaaagcaatggatacctccaccaatcgtgaaaaccaaacgaaaaagaaacaacatttgacaaaagccataaaaaagagttcatctt 20251756  T
Q  640 ca 641  Q
    ||    
T  20251757 ca 20251758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 20251512 - 20251570
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtg 451  Q
    |||||| ||||| ||||||||||| ||||||||||||| |||| || ||||||| ||||    
T  20251512 acaaatcaaaatggaatatattgcacaaaagagaggtgtttcaccctgcacaaggtgtg 20251570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 26397287 - 26397345
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtg 451  Q
    |||||| ||||| |||||||||||||||||||   |||||||| |||||||||| ||||    
T  26397287 acaaatcaaaatggaatatattgctcaaaagaagagtgattcaccccgcacaaggtgtg 26397345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 37414638 - 37414696
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtg 451  Q
    |||||||||||| | ||||||||||||||||| |||||| ||| || ||||||| ||||    
T  37414638 acaaattaaaatgggatatattgctcaaaagaaaggtgaatcaccctgcacaaggtgtg 37414696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 465
Target Start/End: Original strand, 17696035 - 17696107
Alignment:
Q  393 acaaattaaaatagaatatattgctc-aaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaat 465  Q
    |||||| ||||||||||||||| ||| |||| ||| ||||||||||||||||||| |||| |||  ||||||||    
T  17696035 acaaatcaaaatagaatatattactcaaaaacaga-gtgattcatcccgcacaaggtgtgctaaaatgatgaat 17696107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 498
Target Start/End: Original strand, 23264112 - 23264217
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacagg 492  Q
    |||||| ||||| | ||||||||||||| ||||  ||| |||| |||||||||| |||| ||| |||| ||| |  | || ||||||||||||  |||||    
T  23264112 acaaatcaaaatgggatatattgctcaatagagtagtgtttcaccccgcacaaggtgtgctaaagtgaggaaaccaccaaagtctgatacaaatcacagg 23264211  T
Q  493 caccta 498  Q
    ||||||    
T  23264212 caccta 23264217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 609 - 641
Target Start/End: Complemental strand, 37268179 - 37268147
Alignment:
Q  609 ttgacgaaagccataaaaaagaattcaacttca 641  Q
    |||||||||||||||||||||| ||||||||||    
T  37268179 ttgacgaaagccataaaaaagagttcaacttca 37268147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 393 - 522
Target Start/End: Complemental strand, 28709241 - 28709112
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacagg 492  Q
    |||||| |||||  |||||||| ||||||||||   ||||||| ||||||||||||||| ||||||||||||||||| ||  |||||||||||||||| |    
T  28709241 acaaatcaaaatgaaatatattactcaaaagaggaatgattcaccccgcacaagatgtgctaacgtgatgaatcatccaatatctgatacaaacaacatg 28709142  T
Q  493 cacctatcaaggatacccgctcccaaggag 522  Q
    | ||||||||||| ||||||||| ||||||    
T  28709141 cccctatcaaggacacccgctcctaaggag 28709112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 541 - 641
Target Start/End: Complemental strand, 28709085 - 28708983
Alignment:
Q  541 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagaggaacaa---ttgacgaaagccataaaaaagaattcaac 637  Q
    ||||||||| ||||||||| ||| ||||||||||||| |||| || ||| ||||||||||||||||||   ||||||| ||||||||||||||||||| |    
T  28709085 ttacatgatgcccatacaaagta-tgggtatctccaccaatcatgaaagccaaacgaaagaggaacaacatttgacgacagccataaaaaagaattcacc 28708987  T
Q  638 ttca 641  Q
    ||||    
T  28708986 ttca 28708983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 393 - 498
Target Start/End: Original strand, 42396698 - 42396803
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacagg 492  Q
    |||||||||||| ||||||||||||||||||| |||||||| | |||||||||| | || ||| |||||||| || | || ||||| ||||||||||| |    
T  42396698 acaaattaaaatggaatatattgctcaaaagaaaggtgatttaccccgcacaaggtatgctaaagtgatgaaacacccaatgtctgttacaaacaacaag 42396797  T
Q  493 caccta 498  Q
    ||||||    
T  42396798 caccta 42396803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 498
Target Start/End: Original strand, 18430433 - 18430538
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgtt-aacgtgatgaatcatctaaggtctgatacaaacaacag 491  Q
    |||||| ||||| ||||||||||||||| ||  |||||||||| ||||||||||||||||| || ||||||||||| | || ||||  ||||||| |||     
T  18430433 acaaatcaaaattgaatatattgctcaagagcaaggtgattca-cccgcacaagatgtgttaaaagtgatgaatcacccaaagtctattacaaaccacat 18430531  T
Q  492 gcaccta 498  Q
    |||||||    
T  18430532 gcaccta 18430538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 478
Target Start/End: Complemental strand, 52763005 - 52762920
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctg 478  Q
    |||||||||||| ||||||||||||||||||    |||||||| | || ||||| |||||||| ||||||||||| |||| |||||    
T  52763005 acaaattaaaatggaatatattgctcaaaagtatagtgattcacctcgtacaaggtgtgttaaagtgatgaatcacctaatgtctg 52762920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 2632752 - 2632810
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtg 451  Q
    |||||| ||||||| ||||||||||||||  ||| ||||||||||||| ||||||||||    
T  2632752 acaaatcaaaataggatatattgctcaaacaagatgtgattcatcccgtacaagatgtg 2632810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 467
Target Start/End: Complemental strand, 26893422 - 26893348
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatca 467  Q
    |||||| ||||| |||| |||||||||||||| |||| ||||| || ||||||| |||| ||| |||||||||||    
T  26893422 acaaatcaaaatggaatgtattgctcaaaagaaaggtaattcaccctgcacaaggtgtgctaaagtgatgaatca 26893348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 17186346 - 17186293
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaag 446  Q
    |||||| ||||| |||||||||||||||||||   |||||||||||||||||||    
T  17186346 acaaatcaaaatggaatatattgctcaaaagaagagtgattcatcccgcacaag 17186293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 541 - 641
Target Start/End: Original strand, 22322558 - 22322661
Alignment:
Q  541 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagaggaacaa---ttgacgaaagccataaaaaagaattcaac 637  Q
    ||||||||||||||||||| | ||||||| ||||||| ||||||| ||  |||||||||  || ||||   | || || ||||||||||| |||||||||    
T  22322558 ttacatgatacccatacaaaggagtgggtgtctccaccaatcgtgaaaaccaaacgaaattggtacaaaattcgaagagagccataaaaaggaattcaac 22322657  T
Q  638 ttca 641  Q
    ||||    
T  22322658 ttca 22322661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 451
Target Start/End: Complemental strand, 44546704 - 44546646
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtg 451  Q
    |||||| ||||| |||||||||||||||| || | |||||||| |||||||||| ||||    
T  44546704 acaaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgcacaaggtgtg 44546646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 485
Target Start/End: Original strand, 20177379 - 20177472
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgtt-aacgtgatgaatcatctaaggtctgatacaaa 485  Q
    |||||| ||||| |||||||||||||||  || | |||||||| | |||||||||| |||| || |||||||||||  |||  |||||||||||    
T  20177379 acaaatcaaaatcgaatatattgctcaatcgaaaagtgattcacctcgcacaagatatgttaaaagtgatgaatcacataatatctgatacaaa 20177472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 21142001 - 21141948
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaag 446  Q
    |||||| ||||||||||||||||||||||  ||  |||||||| ||||||||||    
T  21142001 acaaatcaaaatagaatatattgctcaaaccaggagtgattcaccccgcacaag 21141948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 53084603 - 53084656
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaag 446  Q
    |||||||||||| ||||||| ||||||||||| |||||||| ||| || |||||    
T  53084603 acaaattaaaatggaatataatgctcaaaagaaaggtgatttatctcgtacaag 53084656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 445
Target Start/End: Original strand, 13159700 - 13159752
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaa 445  Q
    |||||| ||||| |||||||||||||||| || | |||||||| |||||||||    
T  13159700 acaaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaa 13159752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 609 - 641
Target Start/End: Complemental strand, 44546474 - 44546442
Alignment:
Q  609 ttgacgaaagccataaaaaagaattcaacttca 641  Q
    ||||||||||||||||||||||||||| |||||    
T  44546474 ttgacgaaagccataaaaaagaattcagcttca 44546442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 445
Target Start/End: Original strand, 46191196 - 46191248
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaa 445  Q
    |||||| ||||| |||||||||||||||| || | |||||||| |||||||||    
T  46191196 acaaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaa 46191248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 393 - 498
Target Start/End: Complemental strand, 38890001 - 38889896
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacagg 492  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||  ||| |||||||| || | || ||||| ||||||||||| |    
T  38890001 acaaattaaaatagaatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtactaaagtgatgaaacacccaacgtctgttacaaacaacaag 38889902  T
Q  493 caccta 498  Q
    ||||||    
T  38889901 caccta 38889896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 407 - 498
Target Start/End: Original strand, 13427964 - 13428055
Alignment:
Q  407 aatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 498  Q
    |||||||||||||||||| |||||||||| ||| |||||| |||||||| ||||||||||| | || ||||| ||||||||||| |||||||    
T  13427964 aatatattgctcaaaagaaaggtgattcaccccacacaaggtgtgttaaagtgatgaatcacccaacgtctgttacaaacaacaagcaccta 13428055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 393 - 484
Target Start/End: Complemental strand, 43656200 - 43656110
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaa 484  Q
    |||||||||||| ||||||||| ||||||||  || |||||||||||||||||| |||| ||| ||||||||||||||||  ||||||||||    
T  43656200 acaaattaaaatggaatatattactcaaaagtaag-tgattcatcccgcacaaggtgtgctaaagtgatgaatcatctaatatctgatacaa 43656110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 472
Target Start/End: Complemental strand, 21120661 - 21120582
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaa 472  Q
    |||||| ||||| ||||||||||||||||||    ||||||||||||||||||| |||| ||| |||||||||| |||||    
T  21120661 acaaatcaaaatggaatatattgctcaaaagcagtgtgattcatcccgcacaaggtgtgctaaagtgatgaatcctctaa 21120582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 460
Target Start/End: Original strand, 45140134 - 45140201
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtga 460  Q
    |||||||||||| | |||||||| |||||||| |||||||||| |||||||||| |||| ||| ||||    
T  45140134 acaaattaaaatgggatatattgttcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtga 45140201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 22681442 - 22681500
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtg 451  Q
    |||||| ||||| |||||||||||||||||||   |||||||| |||||||||| ||||    
T  22681442 acaaatcaaaatggaatatattgctcaaaagaagagtgattcaccccgcacaaggtgtg 22681500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 29352773 - 29352721
Alignment:
Q  419 aaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaa 472  Q
    ||||||||| |||||||||| |||||||||||| ||| |||||||||| |||||    
T  29352773 aaaagagag-tgattcatcctgcacaagatgtgctaaagtgatgaatcctctaa 29352721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 609 - 641
Target Start/End: Original strand, 7567168 - 7567200
Alignment:
Q  609 ttgacgaaagccataaaaaagaattcaacttca 641  Q
    ||||||||||||||||||||||||||| |||||    
T  7567168 ttgacgaaagccataaaaaagaattcagcttca 7567200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 472
Target Start/End: Complemental strand, 20398941 - 20398862
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaag-agaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaa 472  Q
    |||||| |||||  ||||||||||||||||| |||| ||||||| |||| |||| ||||| ||| ||| ||||||||||||    
T  20398941 acaaatcaaaatgaaatatattgctcaaaagcagag-tgattcaccccgtacaaaatgtgctaaagtggtgaatcatctaa 20398862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 395 - 498
Target Start/End: Original strand, 25026737 - 25026840
Alignment:
Q  395 aaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggca 494  Q
    |||| ||||| ||||||||| ||||||||||| || ||||| |||||| ||  |||| ||| |||||||| |||| || |||||||||||| ||||||||    
T  25026737 aaatcaaaatggaatatattactcaaaagagaagtaattcaccccgcataaagtgtgctaaagtgatgaaccatccaatgtctgatacaaaaaacaggca 25026836  T
Q  495 ccta 498  Q
    ||||    
T  25026837 ccta 25026840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 393 - 498
Target Start/End: Complemental strand, 18489812 - 18489707
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacagg 492  Q
    |||||| ||||| ||||||||||||||||||| |||||||||| |||||||||| |||| ||| ||||  || || | || ||||| ||||||||| | |    
T  18489812 acaaatcaaaatggaatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtgagaaaacacccaacgtctgttacaaacaaaaag 18489713  T
Q  493 caccta 498  Q
    ||||||    
T  18489712 caccta 18489707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 638
Target Start/End: Complemental strand, 5195486 - 5195386
Alignment:
Q  541 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagagg---aacaattgacgaaagccataaaaaagaattcaac 637  Q
    |||||||| |||||||||| | ||||||||||||||| ||||||| ||  ||||||| | |||   |||| | || ||||||||||||||||| ||||||    
T  5195486 ttacatgacacccatacaatgaagtgggtatctccaccaatcgtgaaaaccaaacgataaaggtataacattcgaagaaagccataaaaaagagttcaac 5195387  T
Q  638 t 638  Q
    |    
T  5195386 t 5195386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 498
Target Start/End: Original strand, 16477627 - 16477733
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaag-agaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacag 491  Q
    |||||| ||||| |||||||||||||||||| | |||||||||| |||||||||| |||| ||| ||||  || || | || ||||| ||||||||| |     
T  16477627 acaaatcaaaatggaatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaagtgagaaaacacccaacgtctgttacaaacaaaaa 16477726  T
Q  492 gcaccta 498  Q
    |||||||    
T  16477727 gcaccta 16477733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 5675492 - 5675545
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaag 446  Q
    |||||| ||||| ||||||||||| ||||||||| |||||||| ||||||||||    
T  5675492 acaaatcaaaatggaatatattgcacaaaagagaagtgattcaccccgcacaag 5675545  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 395 - 498
Target Start/End: Complemental strand, 26438422 - 26438319
Alignment:
Q  395 aaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggca 494  Q
    |||||||| | |||||||||| |||||||| |||||||||| || ||||||| |||| ||| |||||||| |||| || || || ||||||||||| |||    
T  26438422 aaattaaattggaatatattgttcaaaagaaaggtgattcaccctgcacaaggtgtgctaaagtgatgaaacatccaacgtttgttacaaacaacaagca 26438323  T
Q  495 ccta 498  Q
    ||||    
T  26438322 ccta 26438319  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 498
Target Start/End: Complemental strand, 11123710 - 11123638
Alignment:
Q  426 aggtgattcatcccgcacaagatgtgttaacgtgatgaatcatctaaggtctgatacaaacaacaggcaccta 498  Q
    |||| ||||| |||||||||| |||| |||  |||||||||| | || ||||| |||||||||||||||||||    
T  11123710 aggtaattcaccccgcacaaggtgtgctaaaatgatgaatcacccaacgtctgttacaaacaacaggcaccta 11123638  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 469
Target Start/End: Original strand, 18556065 - 18556141
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtgatgaatcatc 469  Q
    |||||||| ||| ||||||||||||||||||||| |   |||| ||||||||||||||| ||| ||| |||| ||||    
T  18556065 acaaattagaatggaatatattgctcaaaagagaagaatttcaccccgcacaagatgtgctaaagtggtgaagcatc 18556141  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 451
Target Start/End: Complemental strand, 3376210 - 3376152
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtg 451  Q
    |||||| ||||||||||||||| |||||||||   |||||||| |||||||||| ||||    
T  3376210 acaaatcaaaatagaatatattactcaaaagaagagtgattcaccccgcacaaggtgtg 3376152  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 455
Target Start/End: Complemental strand, 12915834 - 12915772
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaa 455  Q
    |||||| |||||  ||||||||||||||| |||| |||||||| ||| |||||| ||||||||    
T  12915834 acaaatcaaaatgaaatatattgctcaaacgagaagtgattcaccccacacaaggtgtgttaa 12915772  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 28157779 - 28157726
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaag 446  Q
    |||||||||||| |||||||||||| |||||| |||||||| | || |||||||    
T  28157779 acaaattaaaatggaatatattgcttaaaagaaaggtgatttaccctgcacaag 28157726  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 641
Target Start/End: Original strand, 30515923 - 30516026
Alignment:
Q  541 ttacatgatacccatacaaggtagtgggtatctccactaatcgtggaagtcaaacgaaagagga---acaattgacgaaagccataaaaaagaattcaac 637  Q
    |||||||| | |||||||| | |||| |||||||||| ||||||| ||  ||||||| | ||||   ||| | || ||||||||||||||||| ||||||    
T  30515923 ttacatgacatccatacaaagaagtgagtatctccaccaatcgtgaaaaccaaacgataaaggagtaacattcgaagaaagccataaaaaagagttcaac 30516022  T
Q  638 ttca 641  Q
    ||||    
T  30516023 ttca 30516026  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 609 - 641
Target Start/End: Original strand, 45468367 - 45468399
Alignment:
Q  609 ttgacgaaagccataaaaaagaattcaacttca 641  Q
    ||||||||||||||||||||||||||| |||||    
T  45468367 ttgacgaaagccataaaaaagaattcagcttca 45468399  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 609 - 641
Target Start/End: Original strand, 45701404 - 45701436
Alignment:
Q  609 ttgacgaaagccataaaaaagaattcaacttca 641  Q
    ||||||||||||||||||||||||||| |||||    
T  45701404 ttgacgaaagccataaaaaagaattcagcttca 45701436  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 460
Target Start/End: Original strand, 7637639 - 7637706
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtgttaacgtga 460  Q
    |||||| ||||| | ||||||||||||||||| |||||||||| |||||||||| |||| ||| ||||    
T  7637639 acaaatcaaaatgggatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtga 7637706  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 609 - 641
Target Start/End: Original strand, 20819822 - 20819854
Alignment:
Q  609 ttgacgaaagccataaaaaagaattcaacttca 641  Q
    |||||||||||||||||||||||||||||||||    
T  20819822 ttgacgaaagccataaaaaagaattcaacttca 20819854  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 20819604 - 20819662
Alignment:
Q  393 acaaattaaaatagaatatattgctcaaaagagaggtgattcatcccgcacaagatgtg 451  Q
    |||||| ||||| ||||||||||||||||||| | |||||||| || ||||||| ||||    
T  20819604 acaaatcaaaatggaatatattgctcaaaagaaaagtgattcacccagcacaaggtgtg 20819662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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