View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852-Insertion-4 (Length: 522)
Name: NF5852-Insertion-4
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852-Insertion-4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 11 - 522
Target Start/End: Complemental strand, 42655632 - 42655121
Alignment:
| Q |
11 |
tcaatccaaacatgcacgtaatgttacacttacacgttccgttttgaaactaacaataaacttataattgctacctaaacagaagccaaatgtggtgatt |
110 |
Q |
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| T |
42655632 |
tcaatccaaacatgcacgtaatgttacacttacacgttccgttttgaaactaacaataaacttataattgctacctaaacagaagccaaatgtggtgatt |
42655533 |
T |
|
| Q |
111 |
cctgctcatatcatagctgaagcaatatcaactatccgcgacattgacctaagatggtcaggtccaatcacacagaaagaaatggaatatgtagaagaat |
210 |
Q |
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| T |
42655532 |
cctgctcatatcatagctgaagcaatatcaactatccgcgacattgacctaagatggtcaggtccaatcacacagaaagaaatggaatatgtagaggaat |
42655433 |
T |
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| Q |
211 |
atgtcctagcaaagtatcctgaatatgcaaatctaattgaaggagatggaagtggtatagacatgtcaagttttatcatcaatgaggagccttcggaatt |
310 |
Q |
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| T |
42655432 |
atgtcctagcaaagtatcctgaatatgcaaatctaattgaaggagatggaagtggtatagacatgtcaagttttatcatcaatgaggagccttcggaatt |
42655333 |
T |
|
| Q |
311 |
accaatgtcagatgatagaagaaagtcaccaagatcgccttcttttggaagcaaccttcctgagatggatagaacacagttagagccatcaagactactt |
410 |
Q |
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| T |
42655332 |
accaatgtcagatgatagaagaaagtcaccaagatcgccttcttttggaagcaaccttcctgagatggatagaacacagttagagccatcaagactactt |
42655233 |
T |
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| Q |
411 |
gatattctcaacaaaaaatcctcctttcctggaagtttcatctcgataccggaaattcaagctcaaaataaggttttgaaacattgtggtttgcctgatg |
510 |
Q |
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| T |
42655232 |
gatattctcaacaaaaaatcctcctttcctggaagtttcatctcgataccggaaattcaagctcaaaataaggttttgaaacattgtggtttgcctgatg |
42655133 |
T |
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| Q |
511 |
gtgagtatttgg |
522 |
Q |
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||||||||||| |
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| T |
42655132 |
atgagtatttgg |
42655121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 52 - 522
Target Start/End: Original strand, 43052390 - 43052863
Alignment:
| Q |
52 |
ttttgaaactaacaataaacttataattgctacctaaacagaagccaaatgtggtgattcctgctcatatcatagctgaagcaatatcaactatccgcga |
151 |
Q |
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||||||||||||||| | |||| |||||| ||| ||| ||||| || |||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43052390 |
ttttgaaactaacaaaagacttgtaattggtacataagcagaaagcacatgtggagattcctgctcatatcatagctgaagcaatatcaacaatccgcgg |
43052489 |
T |
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| Q |
152 |
cattgacctaagatggtcaggtccaatcacacagaaagaaatggaatatgtagaagaatatgtcctagcaaagtatcctgaatatgcaaatctaattgaa |
251 |
Q |
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|||| ||| ||||||||||||||||| |||| |||||||||||||| |||| || |||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
43052490 |
tattggccttagatggtcaggtccaattacaccgaaagaaatggaatgtgtaaaacaatatgtcctagcaaagtatccagaatatgcaaatctcattgaa |
43052589 |
T |
|
| Q |
252 |
ggagatggaagtggtatagacatgtcaagttttatcatcaatgaggagccttcggaattaccaatgtcagatgatagaagaaagtcaccaagatcgcctt |
351 |
Q |
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|| ||||||||||||| ||| ||||| |||||||| ||||||| |||||||| |||||||| ||||||||||||| ||||||||| |||| | ||| |
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| T |
43052590 |
ggcgatggaagtggtacagatatgtccagttttatgatcaatggggagcctttaaaattaccactgtcagatgatagtagaaagtcattaagaccatctt |
43052689 |
T |
|
| Q |
352 |
---cttttggaagcaaccttcctgagatggatagaacacagttagagccatcaagactacttgatattctcaacaaaaaatcctcctttcctggaagttt |
448 |
Q |
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| T |
43052690 |
ataattttggaagcgaccctcctgaaatggatatgacacagctagagccatcaagactacttgatattctcaataaaaaatcatcctttcctggaagatt |
43052789 |
T |
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| Q |
449 |
catctcgataccggaaattcaagctcaaaataaggttttgaaacattgtggtttgcctgatggtgagtatttgg |
522 |
Q |
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| T |
43052790 |
catctcgatcccggaaattcaagctcagaataaggttttgaagcattgtggtttgcctgatgctgagtatttgg |
43052863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 106 - 295
Target Start/End: Complemental strand, 45479770 - 45479581
Alignment:
| Q |
106 |
tgattcctgctcatatcatagctgaagcaatatcaactatccgcgacattgacctaagatggtcaggtccaatcacacagaaagaaatggaatatgtaga |
205 |
Q |
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||||||| ||||| |||||||||||||| ||||||||||||||||| | || | |||||||||||||||||||||| ||||||||||||||||| || |
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| T |
45479770 |
tgattccagctcacatcatagctgaagcgatatcaactatccgcgaattcgatattagatggtcaggtccaatcacaccaaaagaaatggaatatgttga |
45479671 |
T |
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| Q |
206 |
agaatatgtcctagcaaagtatcctgaatatgcaaatctaattgaaggagatggaagtggtatagacatgtcaagttttatcatcaatga |
295 |
Q |
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| T |
45479670 |
acagtatgttctagcaaagtatccagaatattcaaggttgattgaaggagatggaaatgggatagacatgtctacctttatcatcaatga |
45479581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 391 - 495
Target Start/End: Complemental strand, 45479467 - 45479363
Alignment:
| Q |
391 |
tagagccatcaagactacttgatattctcaacaaaaaatcctcctttcctggaagtttcatctcgataccggaaattcaagctcaaaataaggttttgaa |
490 |
Q |
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|||||| |||||| ||||||||||||||||||| |||||||| ||| | ||||||||||| ||||| || ||||||||||||||||||||||||||||| |
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| T |
45479467 |
tagagcaatcaaggttacttgatattctcaacaagaaatcctcatttaccggaagtttcatatcgatccccgaaattcaagctcaaaataaggttttgaa |
45479368 |
T |
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| Q |
491 |
acatt |
495 |
Q |
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|||| |
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| T |
45479367 |
gcatt |
45479363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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