View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852-Insertion-5 (Length: 474)
Name: NF5852-Insertion-5
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 35242139 - 35242360
Alignment:
| Q |
8 |
acacacttcattggtattcaatactttggagaaaaacgcgagaactgaatatagatggaataccaagagttgggagatttgaatttcaaaatctgcaata |
107 |
Q |
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| T |
35242139 |
acacatttcattggtattcaatactttcga--aacacgcgagaactgaatatagatggaataccaagagttgggagatttgaatttcaaaatctgcaata |
35242236 |
T |
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| Q |
108 |
aacgagactatcttgcatatatcccgccaaaagcattagggttttctaaatagggtttgcatattgaaccttaggattagatattaagatacactcatag |
207 |
Q |
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| T |
35242237 |
aacgagactatcttgcatatatcccgccaaaagcattagggttttctaaatagggtttgcatattgaaccttaggattagatattaagatacactcatag |
35242336 |
T |
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| Q |
208 |
attaaggtgtatcgatactcttgc |
231 |
Q |
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|||||||||||| |||| |||||| |
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| T |
35242337 |
attaaggtgtattgatagtcttgc |
35242360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 318 - 474
Target Start/End: Original strand, 35242447 - 35242602
Alignment:
| Q |
318 |
aagaatcatactaatgttgttaaaccctaaaccctaaaatcataaacccttaatcaatcagcatgtccnnnnnnnncttcctgacattgttatggcatag |
417 |
Q |
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| T |
35242447 |
aagaatcatactaatgttgttaaaccctaaaccctaaaatcataaaccctgaatcaatcaacatgtc-ttttttttcttcctgacattgttatggcatag |
35242545 |
T |
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| Q |
418 |
ttaggatctccgtagcaccaacacctctgatcaaagaagacatgtcttgtgtccgtg |
474 |
Q |
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| T |
35242546 |
ttaggatctccgtagcaccaacacctctgatcaaagaagacatgtcttgtgtccgtg |
35242602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 28021446 - 28021378
Alignment:
| Q |
129 |
tcccgccaaaagcattagggttttctaaatagggtttgcatattgaaccttaggattagatattaagat |
197 |
Q |
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| T |
28021446 |
tcccgcccaatgcattagggtttagaaaatggggtatgcataatgtaccttaggattagatattaagat |
28021378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 43720006 - 43719948
Alignment:
| Q |
140 |
gcattagggttttctaaatagggtttgcatattgaaccttaggattagatattaagata |
198 |
Q |
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|||||||||||| |||| |||| |||||| || |||||||||||||||||||||||| |
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| T |
43720006 |
gcattagggtttagaaaatggggtatgcataatgtaccttaggattagatattaagata |
43719948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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