View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852-Insertion-7 (Length: 453)
Name: NF5852-Insertion-7
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 83 - 304
Target Start/End: Original strand, 32423838 - 32424055
Alignment:
| Q |
83 |
aatagtttgcctgctataactgctctatgcatttttacgtagtaagcgatctcggccacaggaaaatgaactaacaatttcatataatttcaattttaac |
182 |
Q |
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| T |
32423838 |
aatagtttgcctgctataactgctctatgcatttttacgtagtaggcgatctcggccacagaaaaatgaactaacaatttcatataatttcaattttaac |
32423937 |
T |
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| Q |
183 |
tatttatttttgatcgaacggtccttatcagttactgcgttaacacataactgcgtagaatctatttcgtgatgaacaaggcaaatcctttactatgttt |
282 |
Q |
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| T |
32423938 |
cattcatttttgatcgaacggtccttatcggttaatgcgttaacacataactgcgtagaatctatttcgtgatgaacaaggc----cctttactatgttt |
32424033 |
T |
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| Q |
283 |
cacactttatgttgttttgatt |
304 |
Q |
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| T |
32424034 |
cacactttatgttgttttgatt |
32424055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 32424085 - 32424196
Alignment:
| Q |
342 |
tactcattctctatttcaacttctttcatttcgttccttcactcaccactcacatacacataccatggcgaaccaaatcatcactcgtttcattcctaaa |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
32424085 |
tactcattctctatttcaacttctttcatttcgttccttcactcaccactcacatacacataccatggcgaaccaaatcatcactcttgtcattcctaaa |
32424184 |
T |
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| Q |
442 |
accctaactccc |
453 |
Q |
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| T |
32424185 |
accctaactccc |
32424196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 32423791 - 32423852
Alignment:
| Q |
9 |
atttattcattaagaatactatgggagggtgatttaatgttcctcacaatagtttgcctgct |
70 |
Q |
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| T |
32423791 |
atttattcattaagaatactatgggagggtgatttaatgttcctcacaatagtttgcctgct |
32423852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 406 - 453
Target Start/End: Original strand, 1542250 - 1542297
Alignment:
| Q |
406 |
atggcgaaccaaatcatcactcgtttcattcctaaaaccctaactccc |
453 |
Q |
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| T |
1542250 |
atggcgaaccaaatcatcactcgtgtcattcctaaaaccctaactccc |
1542297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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