View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5852-Insertion-8 (Length: 392)
Name: NF5852-Insertion-8
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852-Insertion-8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 207 - 382
Target Start/End: Complemental strand, 41133514 - 41133339
Alignment:
| Q |
207 |
atgtattggtgatttaccaagatgtcaaaatttgagggtgttatcgtatctgatcaattgcttcaaagccagtttacacaggttgaacttcgcagcctta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133514 |
atgtattggtgatttaccaagatgtcaaaatttgagggtgttattgtatctgatcaattgcttcaaagccagtttacacaggttgaacttcgcagcctta |
41133415 |
T |
|
| Q |
307 |
aatcaaaagtaagttcttttctttctttccttatacaaaggaccttttggtccaatttcatgttttgtatgtgtta |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41133414 |
aatcaaaagtaagttcttttctttctttccttatacaaaggacattttggtccaatttcatgttttgtatgtgtta |
41133339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 41133712 - 41133573
Alignment:
| Q |
9 |
ctttgtcaggataacgttggacagattgatcacttacacgacctaaaaccacttctagatttggtcctttatgtttttggcattagtttgttgagtactt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133712 |
ctttgtcaggataacgttggacagattgatcacttacacgacctaaaaccacttctagatttggtcctttatgtttttggcattagtttgttgagtactt |
41133613 |
T |
|
| Q |
109 |
cacattaccacattgttgttattcctttatctgcaaatac |
148 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41133612 |
cacattaccacattgttgttattcctttttctgcaaatac |
41133573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 18575419 - 18575471
Alignment:
| Q |
266 |
gcttcaaagccagtttacacaggttgaacttcgcagccttaaatcaaaagtaa |
318 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||||||||| | |||||| |||||| |
|
|
| T |
18575419 |
gcttcaaaaccagtttacacaagttgagcttcgcagcttaaaatcacaagtaa |
18575471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University