View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852-Insertion-9 (Length: 382)
Name: NF5852-Insertion-9
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852-Insertion-9 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 19910115 - 19910356
Alignment:
| Q |
15 |
cctttaaataaggtctttattttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatt |
114 |
Q |
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| T |
19910115 |
cctttaaataaggcctttattttgccaagaaatccttcaatggttcatcttcattctcaaattcaaaaattggagaagaaaaaacaataagttttaaatc |
19910214 |
T |
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| Q |
115 |
tcagatataatgagacctattatctattccatgtctttgatttaagaaatgcaccgagaagacctcaactaagttctagtgatccttttatcaaacaatt |
214 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
19910215 |
tcaggtataatgagacctattatctattccatgtc-ttgatttaagaaatgcatagagaagacctcaactaagttctcgtgatccttttatcatacaatt |
19910313 |
T |
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| Q |
215 |
a-gaatgcaaaaaatagcattcatcaaagtgaatgacttgtag |
256 |
Q |
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| T |
19910314 |
ataaatgcaaaaaatagcattcatcaaagtgaatgacttgtag |
19910356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 1661326 - 1661534
Alignment:
| Q |
15 |
cctttaaataaggtctttattttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatt |
114 |
Q |
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|||| |||||||| |||||||||||||||||| ||| |||||| || | | ||||| |||||||||||| |||| |||||||||||||||||||||||| |
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| T |
1661326 |
ccttcaaataaggcctttattttgccaaggaagcctgtaatggtacaccataattgttaaattcaaaaatgggaggagaaaaaacaataagttttaaatt |
1661425 |
T |
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| Q |
115 |
tcagatataatgagacctattatctattccatgtctttgatttaagaaatgcaccgagaagacctcaactaagttctagtgatccttttatcaaacaatt |
214 |
Q |
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| T |
1661426 |
acaggcataatgggagctattatctattccatgtc-ttgatttaagaaatgcactgagaagacctcaactaagttttaatgatccttttatcaaacagtt |
1661524 |
T |
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| Q |
215 |
agaatgcaaa |
224 |
Q |
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| T |
1661525 |
agaatgcaaa |
1661534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 19910343 - 19910419
Alignment:
| Q |
269 |
tgaatgacttgtagatgatactaaattgggtactgccaaagcattgcatttccatttctccagttttgaaatctctc |
345 |
Q |
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| T |
19910343 |
tgaatgacttgtagatgatactaaattggacactgccaaaacattgcatttccatttctcccgttttgaaatctctc |
19910419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 55877858 - 55877810
Alignment:
| Q |
176 |
acctcaactaagttctagtgatccttttatcaaacaattagaatgcaaa |
224 |
Q |
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| T |
55877858 |
acctcaactaaattcaagcgatccttttatcatacacttagaatgcaaa |
55877810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 19963951 - 19963630
Alignment:
| Q |
20 |
aaataaggtctttattttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcaga |
119 |
Q |
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|||||||| ||||||||||||||||||| || ||||||| || | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19963951 |
aaataaggcctttattttgccaaggaactctgcaatggtacaccgtcattgttaaattcaaaaattggaggagaaaaaacaataagttttaaatttcagg |
19963852 |
T |
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| Q |
120 |
tataatgagacctattatctattccatgtctttgatttaagaaatgcaccgagaagacctcaactaagttctagtgatccttttatcaaacaattagaat |
219 |
Q |
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| T |
19963851 |
cataatgagagctattatctattccatatc-ttgatttaagaaatgcaaagagaagacctcgactaagttctaatgatccttttgtcaaacagttaaaat |
19963753 |
T |
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| Q |
220 |
gcaaaaaatagcattcatcaaagtgaatgacttgtagtaatnnnnnnnntgaatgacttgtagatgatactaaattgggtactgccaaagcattgcattt |
319 |
Q |
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| T |
19963752 |
gc--aaagtagcattcatcgaagtgaatgacttgtagtactaacaaaagtgaatgac-tataaatgatactaaattgggcactgccaaagcatcacattc |
19963656 |
T |
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| Q |
320 |
ccatttctccagttttgaaatctctc |
345 |
Q |
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| T |
19963655 |
ctatttctcctgttttgaaatatctc |
19963630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 25490376 - 25490145
Alignment:
| Q |
20 |
aaataaggtctttattttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcaga |
119 |
Q |
| |
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||||||| ||||||||| ||||||||||| |||||| |||| ||||||||||||| ||||||| ||||||||||||| |||||||||||| | | |
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| T |
25490376 |
aaataagacctttatttttccaaggaacccgctaatggtacatcctcattgtcaaatttaaaaattcgagaagaaaaaaccgtaagttttaaatctaaag |
25490277 |
T |
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| Q |
120 |
tataatgagacctattatctattccatgtctttgatttaagaaatgcaccgagaagacctcaactaagttctagtgatccttttatcaaacaattagaat |
219 |
Q |
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| T |
25490276 |
cataatgagagccattacctatttcatgtc-ttgatttaa-aattgcatagagaagacctcaacttagttctagtgatccttttatcaaacggttataat |
25490179 |
T |
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| Q |
220 |
gcaaaaaatagcattcatcaaagtgaatgacttgta |
255 |
Q |
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| T |
25490178 |
gc--aaagtagctttcatcaaagtgaatgacttgta |
25490145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 13194 - 13326
Alignment:
| Q |
34 |
ttttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcagatataatgagaccta |
133 |
Q |
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| T |
13194 |
ttttgccaaggaaccctgcaaaggaacttcctcattgtcagattcagaaattggagaagaaacaaccttgagttttaaatttcatgcataataggactta |
13293 |
T |
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| Q |
134 |
ttatctattccatgtctttgatttaagaaatgca |
167 |
Q |
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| T |
13294 |
ttacctcttccatgtc-tagatttaataaatgca |
13326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 7881508 - 7881563
Alignment:
| Q |
15 |
cctttaaataaggtctttattttgccaaggaacccttcaatggttcatcttcattg |
70 |
Q |
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|||| |||||||| |||||||||||||||||||||| ||||||| |||| |||||| |
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| T |
7881508 |
ccttcaaataaggcctttattttgccaaggaaccctgcaatggtacatcgtcattg |
7881563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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