View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5852_high_1 (Length: 801)
Name: NF5852_high_1
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_high_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 712; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 13 - 784
Target Start/End: Original strand, 40060644 - 40061430
Alignment:
| Q |
13 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacctgaaatgttcttcaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40060644 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattactatatggtattgcaacctgaaatgttcttcaca |
40060743 |
T |
|
| Q |
113 |
agttcaatttactatatggtattgttcttaaggccagtttttaagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40060744 |
agttcaatttactatatggtattgttcttaaggccagtttttaagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatg |
40060843 |
T |
|
| Q |
213 |
gaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatgtccttcagcctaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40060844 |
gaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatgtccttcagcctaca |
40060943 |
T |
|
| Q |
313 |
tactaaatatatgatgttcatgttgtagccatcac-aaatgtaccactggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttc |
411 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40060944 |
tactaaatatatgttgttcatgttgtagccatcacaaaatgtaccaccggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttc |
40061043 |
T |
|
| Q |
412 |
ttatatgcacaagagaaattacactggacaattgtg--------------ttttttaatatatttgctatatactgcaggaattattaggcagccgaagt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40061044 |
ttatatgcacaagagaaattacactggacaattgtgttttttaatatatattttttaatatatttgctatatactgcaggaattattaggcagccgaagt |
40061143 |
T |
|
| Q |
498 |
ggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaacctagaggt |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40061144 |
ggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacctaagattacttctcttggtccaaacctagaggt |
40061243 |
T |
|
| Q |
598 |
agaggcggtttatattgaaatttttgcccgtttatcttatttcgcgtctttggatagaatttattttgtaactaaaactcatccagtttgtcaatctttc |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40061244 |
agaggcggtttatattgaaatttttgcccgtttatcttatttcgcgtcttaggatagaatttattttgtaactaaaactcatccagtttgtcaatctttc |
40061343 |
T |
|
| Q |
698 |
tctggaaaattccctgcattgagtacaattttgccacaaccactattttaggcactaactagattaggtctcaacagtcttttacta |
784 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40061344 |
tctggaaaattccctgcattgagtacaattttgccacaaccactattttaggcactaactagattaggtctcaacagtcttttacta |
40061430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 154 - 692
Target Start/End: Original strand, 40086684 - 40087228
Alignment:
| Q |
154 |
taagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatggaggaaccaactttgaccgaagtaccggcggaccattcatt |
253 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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|
| T |
40086684 |
taagaggaattagctgatactgtatcatttttcattgcttgactaaaaacagtaccatggaggaaccaactttgaccgaagtactggaggaccattcatt |
40086783 |
T |
|
| Q |
254 |
gctacaagttacgattttgatgcaccgattgatgaatatggtatg--tccttcagcctacatact-aaatatatgatgttcatgttgtagccatcacaaa |
350 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||| | || | |||| ||| |||||||||||||||| ||||||| |
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|
| T |
40086784 |
gcaacaagttatgattttgatgcaccgattgatgagtatggtatgactccttcaaccttcttattgaaatctat--tgttcatgttgtagccgtcacaaa |
40086881 |
T |
|
| Q |
351 |
tgtaccactggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaattgtgttt |
450 |
Q |
| |
|
| | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||| ||| |
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|
| T |
40086882 |
tacaacactggtaatacatcgaagaagataaattgataatatcacatggatagtttatttcttatatgtagaagagaaattacactggacgattggattt |
40086981 |
T |
|
| Q |
451 |
tttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgtta |
550 |
Q |
| |
|
|||||||| || |||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
40086982 |
tttaatatcttcgctacatgctgcaggagttattaggcagccgaagtggggtcatcttaaagatgtgcacaaggccataaagctttgtgaagaagcatta |
40087081 |
T |
|
| Q |
551 |
atagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgttt-----atcttatttcgcgtc |
645 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
40087082 |
atagccgcagaacccaagattacttatcttggtccaaacctagaggtatagatggtttatattgaaatttttgttcgtttgaaacatcttattccgcgtc |
40087181 |
T |
|
| Q |
646 |
tttggatagaatttattttgtaactaaaactcatccagtttgtcaat |
692 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40087182 |
ttaggatataatttattttgtaactaaaactcatctggtttgtcaat |
40087228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 784
Target Start/End: Original strand, 40078766 - 40079576
Alignment:
| Q |
13 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacctgaaatgttcttcaca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||| || |
|
|
| T |
40078766 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgtggtggaacatttcaaaactactatatggtattgcaacctgaaatgttgttcgca |
40078865 |
T |
|
| Q |
113 |
agttcaatttactatatggtattgtt-cttaaggccagtttt-----taagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagt |
206 |
Q |
| |
|
|||||||||| |||||| || | || ||| | | | || ||||||||||||| | ||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
40078866 |
agttcaattt--tatatgatagtattacttcacggaaaaattggctctaagaggaattagctaatactttatcattttttattgcttgcccaaaaacagt |
40078963 |
T |
|
| Q |
207 |
accatggaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatg--tccttc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||| || ||| |
|
|
| T |
40078964 |
accatggaggaaccaactttgaccgaagtaccggcggacctttcattgctacaagttatgattatgatgcaccgattgatgagtatggtatgactctttc |
40079063 |
T |
|
| Q |
305 |
agcctacatactaaatatatgatgttcatgttgtagccatcacaaatgtaccactggtaata-------catcgaagaagataaattaataatatcacat |
397 |
Q |
| |
|
| ||| |||| | ||||| ||||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||| ||| |
|
|
| T |
40079064 |
aaccttaatac-gagtatattttgttcatgttgtagccatcgcaaatgcaccactggtaatacctcggtcctcgaagaagataaattaataatattacac |
40079162 |
T |
|
| Q |
398 |
gcatagtttatttcttatatgcacaagagaaattacactggacaat----tgtgt-tttttaatatatttgctatatactgcaggaattattaggcagcc |
492 |
Q |
| |
|
|||||||| |||||| ||| | |||||||||||||||||||||| ||||| | |||||||| | | ||||| ||||||||||||||||||||| |
|
|
| T |
40079163 |
gcatagttattttcttttatttagaagagaaattacactggacaattttctgtgtgtgtttaatatctctactatacgctgcaggaattattaggcagca |
40079262 |
T |
|
| Q |
493 |
gaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaaccta |
592 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||||||||||||| ||||| |||||||||| || ||||||||| | |||||||||| ||||||| |
|
|
| T |
40079263 |
aaagtggggtcatcttaaagatgtacacaaggccataaagctttgtgaagaagcactaatagctactgatcccaagatttcatctcttggtcaaaaccta |
40079362 |
T |
|
| Q |
593 |
gaggtagaggcggtttatattgaaatttttgcccgtt-----tatcttatttcgcgtctttggatagaatttatt------ttgtaactaaaactcatcc |
681 |
Q |
| |
|
|||||| ||| ||| | |||||||||||||| | ||| |||||| | | |||||| |||||||| | | |||||||||||| || || |
|
|
| T |
40079363 |
gaggtataggtggtatgtattgaaatttttgtctgttcgaaacatcttactccacgtcttaggatagaaatatctggatcattgtaactaaaattcttct |
40079462 |
T |
|
| Q |
682 |
agtttgtcaat-----------ctttctctggaaaattccctgcattgagtacaattttgccacaaccactattttaggcactaactagattaggtctca |
770 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||| |||||||||| ||||||||||||||||| ||| | |
|
|
| T |
40079463 |
agtttgtcaatcttgtaagttactttctctggaaaattccctccattgagtgcaatttttccacagccactattttcggcactaactagattagttctta |
40079562 |
T |
|
| Q |
771 |
acagtcttttacta |
784 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40079563 |
acagtcttttacta |
40079576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 40086539 - 40086644
Alignment:
| Q |
13 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacctgaaatgttcttcaca |
112 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40086539 |
acctgtggaagatctcgcatttgctgtcgcacgctttttccaacgaggtggaacatttcaaaattactatatggtattgcaacctgaaatgttcttcaca |
40086638 |
T |
|
| Q |
113 |
agttca |
118 |
Q |
| |
|
|||||| |
|
|
| T |
40086639 |
agttca |
40086644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 472 - 555
Target Start/End: Complemental strand, 22014313 - 22014230
Alignment:
| Q |
472 |
tgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagc |
555 |
Q |
| |
|
||||||| |||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||| |
|
|
| T |
22014313 |
tgcaggagatattagacagcccaaatggggtcatcttaaagatttgcacaaggccataaagctttgtgaagaagcattgatagc |
22014230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 298
Target Start/End: Complemental strand, 22014530 - 22014420
Alignment:
| Q |
188 |
ttgcctgctcaaaaacagtaccatggaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatg |
287 |
Q |
| |
|
|||| ||||| |||| ||||||||||||| || ||||||| |||| || || ||||| |||||| | || ||||| |||| ||||||||| ||||||| |
|
|
| T |
22014530 |
ttgcttgctctaaaatagtaccatggagggactaactttggtcgaacaacgggtggacctttcatttcaacgagttatgattatgatgcacccattgatg |
22014431 |
T |
|
| Q |
288 |
aatatggtatg |
298 |
Q |
| |
|
| ||||||||| |
|
|
| T |
22014430 |
agtatggtatg |
22014420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 22014836 - 22014765
Alignment:
| Q |
17 |
gtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggta |
88 |
Q |
| |
|
|||||||||||||| ||||| || || |||||||| || || |||||||| ||||||||||| || |||||| |
|
|
| T |
22014836 |
gtggaagatcttgcttttgccgttgcgcgcttttttcagcggggtggaacttttcaaaattactacatggta |
22014765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 35257855 - 35257931
Alignment:
| Q |
13 |
acctgtggaagatcttgcatttgctgtggcacgctttttccaacgaggtggaacatttcaaaattattatatggtat |
89 |
Q |
| |
|
|||||| ||||| |||||||||||||| || || |||||||| || || |||| ||||||||||||||||||||| |
|
|
| T |
35257855 |
acctgttgaagaccttgcatttgctgttgcgcgttttttccagcgtggaggaagtcttcaaaattattatatggtat |
35257931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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