View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_high_10 (Length: 431)
Name: NF5852_high_10
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_high_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 129 - 431
Target Start/End: Complemental strand, 708069 - 707767
Alignment:
| Q |
129 |
aagcgttgtcttttgggaatctagcgacgacaaagtttggaaaagtcgatggtactgtgaaaaggacagatggtatcagttatgattattgtggcaaagt |
228 |
Q |
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| T |
708069 |
aagcgttgtcttttgggaatctagcgacgacaaagtttggaaaagtcgatggtactgtgaaaaggacagatggtatcagttatgattattgtggcaaagt |
707970 |
T |
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| Q |
229 |
ttatgcatttgattgataaatcttatcgatattttcatctctaaattaaacatgtattaattgcaataattctatgctcaaattagcattttcctttaac |
328 |
Q |
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| T |
707969 |
ttatgcatttgattgataaatcttatcgatattttcatctctaaattaaacatgtattaattgcaataattctatgctcaaattagcattttcctttaac |
707870 |
T |
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| Q |
329 |
aatatatttttctctccaaatattaattacttgatataatagnnnnnnnnnnnnngaattgaccgtttgaaaatgataagtaattaattttttcaaggat |
428 |
Q |
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| T |
707869 |
aatatattttcctctccaaatattaattacttgatataatagtttttttttttttgaattgaccgtttgaaaatgataagtaattaattttttcaaggat |
707770 |
T |
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| Q |
429 |
att |
431 |
Q |
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| T |
707769 |
att |
707767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 708205 - 708161
Alignment:
| Q |
19 |
atgaagacagaggaggggtaagtaataaaacacagtgttcaatgt |
63 |
Q |
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| T |
708205 |
atgaagacagagaaggggtaagtaataaaacacagtgttcaatgt |
708161 |
T |
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