View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5852_high_16 (Length: 364)
Name: NF5852_high_16
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_high_16 |
 | |
|
| [»] scaffold0736 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0736 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0736
Description:
Target: scaffold0736; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 100 - 349
Target Start/End: Complemental strand, 5847 - 5585
Alignment:
| Q |
100 |
ttctcaatgaaatgtatgtacatataatatatggtgtgaattataagatgactattactgttagaaatttttcatctaaatcagttcatagttattaaat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5847 |
ttctcaatgaaatgtatgtacatataatatatggtgtgaattataagatgactattactgttagaaaattttcatctaaatcagttcatagttattaaat |
5748 |
T |
|
| Q |
200 |
ttaactcaaaatctcatcaaaatatgctt-------------agaaaaagtgttcaaaataaggccaagcactatgttgacatttcatgaagattctata |
286 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5747 |
ttaactcaaaatctcatcaaaatatgcttgtaaaatatgcttagaaaaagtgttcaaaataaggccaagcactatgttgacatttcatgaagattctata |
5648 |
T |
|
| Q |
287 |
atggtcattttccatcaagaatatataattcccagagggacgttgcatagccaataaacaaat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5647 |
atggtcattttccatcaagaatatataattcccagagggacgttgcatagccaataaacaaat |
5585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 100 - 349
Target Start/End: Complemental strand, 45480974 - 45480712
Alignment:
| Q |
100 |
ttctcaatgaaatgtatgtacatataatatatggtgtgaattataagatgactattactgttagaaatttttcatctaaatcagttcatagttattaaat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45480974 |
ttctcaatgaaatgtatgtacatataatatatggtgtgaattataagatgactattactgttagaaatttttcatctaaatcagttcatagttattaaat |
45480875 |
T |
|
| Q |
200 |
ttaactcaaaatctcatcaaaatat-------------gcttagaaaaagtgttcaaaataaggccaagcactatgttgacatttcatgaagattctata |
286 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45480874 |
ttaactcaaaatctcatcaaaatatgcttgtaaaatatgcttagaaaaagtgttcaaaataaggccaagcactatgttgacatttcatgaagattctata |
45480775 |
T |
|
| Q |
287 |
atggtcattttccatcaagaatatataattcccagagggacgttgcatagccaataaacaaat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45480774 |
atggtcattttccatcaagaatatataattcccggagggacgttgcatagccaataaacaaat |
45480712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University