View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_high_20 (Length: 317)
Name: NF5852_high_20
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 55578114 - 55577823
Alignment:
| Q |
19 |
taataagatttgaaaagacagggagattaacatcataaactagtccaaaacaaagtaataaaccccagattgaaaagaaaagaagctaagcagtactata |
118 |
Q |
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| T |
55578114 |
taataagatttgaaaagacagggagattaacatcataaactagtccaaaacaaagtaataaaccccaaattgaaaagaaaagaagctaagcagtactata |
55578015 |
T |
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| Q |
119 |
gttttatgcaaggccacaatcttgtgttcaatgccagtatggatcacgatggtgatccaaaatcccaaccctttgctgaaagtcgtccatcctatccagt |
218 |
Q |
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| T |
55578014 |
gttttatgcaaggccacaatcttgtgttcaatgccagtatggatcacgatggtgatccaaaatcccaaccctttgctgaaagtcgtccatcctatccagt |
55577915 |
T |
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| Q |
219 |
attttgtctgtcatagctgaggggtatttccaagatacagccataatggccctccaatcagagccaatagcattgtaaacctttttcatctc |
310 |
Q |
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| T |
55577914 |
attttgtctgtcatagctgaggggtatttccaagatacagccataatggccctccaatcagagccaatagcattgtaaacctttttcatctc |
55577823 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 21257002 - 21256948
Alignment:
| Q |
44 |
attaacatcataaactagtccaaaacaaagtaataaaccccagattgaaaagaaa |
98 |
Q |
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| T |
21257002 |
attaaaatcataaactagtccaaaataaagtaataaacaccaaattgaaaagaaa |
21256948 |
T |
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