View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5852_high_21 (Length: 317)
Name: NF5852_high_21
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 19468590 - 19468731
Alignment:
| Q |
108 |
ttttcctcgttgtttttccactgataatttagaaaggttaacacaaaaataaattgagaactttgtagaacataacacgagaagttatttatgatttaag |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19468590 |
ttttcctcgttgtttttccta-gataatttagaaaggttaacacaaaaataaattgagaactttgtagaacataacacgagaagttatttatgatttaag |
19468688 |
T |
|
| Q |
208 |
aatgttaagtctaaattttgatattctaaaagaaattaaagaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19468689 |
aatgttaagtctaaattttgatattctaaatgaaattaaagaa |
19468731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 19469777 - 19469832
Alignment:
| Q |
252 |
ccatagcttggtgtgtgggccaccataacccaaatttctaatctacttcacaggtt |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19469777 |
ccatagcttgttgtgtgggccaccataacccaaatttctaatctacttcacgggtt |
19469832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University