View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_high_32 (Length: 240)
Name: NF5852_high_32
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_high_32 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 38718116 - 38717883
Alignment:
| Q |
8 |
acatcatcaactctatacaagaacagtaacactaacgatttaccattgtgaaaacattaagcaaactgaaattttaataagtataaattttcatacaatt |
107 |
Q |
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| T |
38718116 |
acatcatcaactctatacaagaacagtaacactaacgatttaccattgtgaaaacattaagcaaactgaaattttaataagtataaattttcatacaatt |
38718017 |
T |
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| Q |
108 |
ttatctggttggctttcttcaatatgcactcagcatgattccacatctgttacaaatatatactacatattaatt-nnnnnnnnnnnntactaaaaatat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38718016 |
ttatctggttggctttcttcaatatgcactcagcatgattccacatctgttacaaatatatactacatattaattaaaaaaaaaataatactaaaaatat |
38717917 |
T |
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| Q |
207 |
aatggcattactgtttaaactgtaacctaaaccc |
240 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38717916 |
aatggcattactgtttaaactgtaacctaaaccc |
38717883 |
T |
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