View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_high_34 (Length: 232)
Name: NF5852_high_34
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41704076 - 41704297
Alignment:
| Q |
1 |
ataattagagaatcattagatattgttagagtttgttaa-aagtagttactaattggttacaaattagttcatgtttgttagtttagctagttaagatca |
99 |
Q |
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| T |
41704076 |
ataattagagaatcattagatattgttaaaagtagttactaattggttacta-ttagttacaaattagttcatgtttgttagtttagctagttaagatca |
41704174 |
T |
|
| Q |
100 |
atatataatgtgaacaacaaaaaattaaatcttacacatccaaattttagaatgcggaaaatgcaagttcataacattttccctatcggattttaaaatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704175 |
atatataatgtgaacaacaaaaaattaaatcttacacatccaaattttagaatgcggaaaatgcaagttcataacattttccctatcggattttaaaatt |
41704274 |
T |
|
| Q |
200 |
caaatgtgtaaaatgcacctatg |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
41704275 |
caaatgtgtaaaatgcacctatg |
41704297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 10908947 - 10908990
Alignment:
| Q |
5 |
ttagagaatcattagatattgttagagtttgttaaaagtagtta |
48 |
Q |
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||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
10908947 |
ttagagatttattagatattgttagagtttgttaaatgtagtta |
10908990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 33826640 - 33826671
Alignment:
| Q |
17 |
tagatattgttagagtttgttaaaagtagtta |
48 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33826640 |
tagatattgttagagtttgttaaaagtagtta |
33826671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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