View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5852_high_36 (Length: 225)

Name: NF5852_high_36
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5852_high_36
NF5852_high_36
[»] chr2 (3 HSPs)
chr2 (99-215)||(1379980-1380096)
chr2 (99-215)||(2999874-2999990)
chr2 (27-73)||(12947076-12947122)
[»] chr4 (11 HSPs)
chr4 (99-215)||(42778136-42778252)
chr4 (99-215)||(30273938-30274054)
chr4 (99-215)||(18106682-18106798)
chr4 (99-215)||(53487079-53487195)
chr4 (99-205)||(34322445-34322551)
chr4 (99-215)||(20395494-20395610)
chr4 (99-166)||(461853-461920)
chr4 (99-215)||(53779943-53780059)
chr4 (118-215)||(29213126-29213223)
chr4 (136-215)||(10563472-10563551)
chr4 (163-215)||(449949-450001)
[»] chr6 (3 HSPs)
chr6 (99-215)||(9199378-9199494)
chr6 (99-215)||(11060985-11061101)
chr6 (99-215)||(17079317-17079433)
[»] chr1 (6 HSPs)
chr1 (99-215)||(17707894-17708010)
chr1 (100-215)||(10711288-10711403)
chr1 (99-215)||(30111051-30111166)
chr1 (112-215)||(41061283-41061386)
chr1 (138-215)||(26720597-26720674)
chr1 (125-212)||(47106832-47106919)
[»] chr7 (5 HSPs)
chr7 (99-215)||(34231597-34231713)
chr7 (99-215)||(29113675-29113791)
chr7 (136-215)||(7458834-7458913)
chr7 (126-214)||(4077174-4077262)
chr7 (171-217)||(28060473-28060519)
[»] chr3 (6 HSPs)
chr3 (99-215)||(33121443-33121559)
chr3 (99-215)||(47537166-47537282)
chr3 (112-215)||(26845769-26845872)
chr3 (99-215)||(19222023-19222138)
chr3 (99-214)||(50544120-50544235)
chr3 (156-203)||(25341529-25341576)
[»] chr8 (4 HSPs)
chr8 (99-215)||(23680060-23680176)
chr8 (107-212)||(45255962-45256067)
chr8 (99-215)||(17658729-17658845)
chr8 (113-215)||(26031390-26031492)
[»] chr5 (7 HSPs)
chr5 (103-205)||(4415830-4415932)
chr5 (99-215)||(7000891-7001007)
chr5 (112-215)||(4923132-4923235)
chr5 (112-215)||(20208858-20208961)
chr5 (107-212)||(6049124-6049229)
chr5 (99-215)||(34874569-34874681)
chr5 (99-214)||(40090238-40090353)
[»] scaffold0007 (1 HSPs)
scaffold0007 (99-218)||(182024-182143)
[»] scaffold0179 (1 HSPs)
scaffold0179 (112-215)||(7426-7529)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 1380096 - 1379980
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1380096 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 1379997  T
Q  199 tttcatcgttatggcct 215  Q
    |||||||||||||||||    
T  1379996 tttcatcgttatggcct 1379980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 2999874 - 2999990
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  2999874 ttggttcaaagacgggtgcttgattcagaagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacgtttgtttctatcttgtgatgcgt 2999973  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  2999974 tttcatctttatggcct 2999990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 12947122 - 12947076
Alignment:
Q  27 gtatagaaatggaaaaatataaagatgaaaaatcaacttattgtttg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12947122 gtatagaaatggaaaaatataaagatgaaaaatcaacttattgtttg 12947076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 42778252 - 42778136
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42778252 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgatgctt 42778153  T
Q  199 tttcatcgttatggcct 215  Q
    |||||||||||||||||    
T  42778152 tttcatcgttatggcct 42778136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 30273938 - 30274054
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  30273938 ttggttcaaagacgggtgcttgacttagaagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctt 30274037  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  30274038 tttcatctttatggcct 30274054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 18106682 - 18106798
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  18106682 ttggttcaaagacgggtgcttgattcagaagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacgtttgtttctatcttgtgatgcgt 18106781  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  18106782 tttcatctttatggcct 18106798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 53487079 - 53487195
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  53487079 ttggttgaaagacgggtgcttgactcagaagcttctttgtgtgtttctgattgtggcatgtgtgaaacggcgcaacatttgtttctatcttgtgatgctt 53487178  T
Q  199 tttcatcgttatggcct 215  Q
    ||||| | |||||||||    
T  53487179 tttcacctttatggcct 53487195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 34322445 - 34322551
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  34322445 ttggttcaaagacgggtgcttgtctcagaagcttctctgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctt 34322544  T
Q  199 tttcatc 205  Q
    |||||||    
T  34322545 tttcatc 34322551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 20395610 - 20395494
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||||||||| ||||||||||  ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  20395610 ttggttcaaagaagggtgcttgatacagaagcttctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctaacttttgatgctt 20395511  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| || ||||||    
T  20395510 tttcatctttttggcct 20395494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 461920 - 461853
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaac 166  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  461920 ttggttcaaagacgggtgcttgacttagaagcttctttgtgtgtttcagattgtggcatgagtgaaac 461853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 53780059 - 53779943
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||| || ||||||||  ||||| |||||||| |  |||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||| ||    
T  53780059 ttggtccatagacgggtaattgacacagaagctgctatgtgtgttacggattgtggcatgagtgaaacggcgcaacatttgtttttatcatgtgatgttt 53779960  T
Q  199 tttcatcgttatggcct 215  Q
    |||| || |||||||||    
T  53779959 tttcttctttatggcct 53779943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 29213126 - 29213223
Alignment:
Q  118 ttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcct 215  Q
    ||||| |||||||| |  |||||||| | |||| ||||||||||||||||||||||||||||||| |||  ||||||| |||||| || |||||||||    
T  29213126 ttgacacagaagctgctatgtgtgttacggattctggcatgagtgaaacggcgcaacatttgtttttattgtgtgatgttttttcttctttatggcct 29213223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 10563472 - 10563551
Alignment:
Q  136 tgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcct 215  Q
    |||||||| | ||||||||||||||||||||| || | ||||||||| |||| ||||||| |||||| || |||||||||    
T  10563472 tgtgtgttacggattgtggcatgagtgaaacgacgtagcatttgtttttatcgtgtgatgttttttcttctttatggcct 10563551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 450001 - 449949
Alignment:
Q  163 aaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcct 215  Q
    |||| |||||||||||||||||||||||||| |||||||| || |||||||||    
T  450001 aaacagcgcaacatttgtttctatcttgtgacgctttttcttctttatggcct 449949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 9199378 - 9199494
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9199378 ttggttcgaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaatggcgcaacatttgtttctatcttgtgatgctt 9199477  T
Q  199 tttcatcgttatggcct 215  Q
    |||||||||||||||||    
T  9199478 tttcatcgttatggcct 9199494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 11060985 - 11061101
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||||||||| ||||||||||  ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  11060985 ttggttcaaagaagggtgcttgatacagaagcttccatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgttcctgacttgtgatgctt 11061084  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  11061085 tttcatctttatggcct 11061101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 17079317 - 17079433
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||||||||||||||||||| | ||||||||||  ||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||    
T  17079317 ttggttcaaagacgggtgcttgtcacagaagcttctatgtatgtttcaggttgtggcatgagtgaatcggcgcgacatttgtttctatcttgtgatgttt 17079416  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  17079417 tttcatctttatggcct 17079433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 17708010 - 17707894
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  17708010 ttggttcaaagacgggtgcttgacttagaagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctt 17707911  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  17707910 tttcatctttatggcct 17707894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 10711288 - 10711403
Alignment:
Q  100 tggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgcttt 199  Q
    ||||||||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10711288 tggttcaaagatgggtgcttgacacagaagcttccatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgcttt 10711387  T
Q  200 ttcatcgttatggcct 215  Q
    |||||| |||||||||    
T  10711388 ttcatctttatggcct 10711403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 30111051 - 30111166
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||| ||||||||||||||||||| ||  |||||| |||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||    
T  30111051 ttggctcaaagacgggtgcttgacacaagagcttctttgtgtgtttcagactgtggcatgtgtgaaaaggcgcaacatttgtttctatcttgtgatg-tt 30111149  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  30111150 tttcatctttatggcct 30111166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 41061283 - 41061386
Alignment:
Q  112 gggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatg 211  Q
    ||||| |||| |||||||||||  |||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||    
T  41061283 gggtgattgattcagaagcttcgatgtgtgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatg 41061382  T
Q  212 gcct 215  Q
    ||||    
T  41061383 gcct 41061386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 26720674 - 26720597
Alignment:
Q  138 tgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcct 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||||    
T  26720674 tgtgtttcagattgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatggcct 26720597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 47106832 - 47106919
Alignment:
Q  125 agaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatgg 212  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |||||| | ||||||    
T  47106832 agaagcttctttgtgtgtttcaaattgtggcatgagtgaaacggcgcaacatttgattttatcttgtgatgcattttcacctttatgg 47106919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 34231713 - 34231597
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||    
T  34231713 ttggttcaaagacgggtgcttgacttagaagcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacactt 34231614  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  34231613 tttcatctttatggcct 34231597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 29113675 - 29113791
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  29113675 ttggttcaaagacgagtgcttgactccgaagcttctttgtgtgttttagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctt 29113774  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| || ||||||    
T  29113775 tttcatctttttggcct 29113791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 7458834 - 7458913
Alignment:
Q  136 tgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcct 215  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||| || |||||||||    
T  7458834 tgtgtgttacagattgtggcatgagcgaaacggcgcaacatttgtttttatcgtgtgatgttttttcttctttatggcct 7458913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 4077262 - 4077174
Alignment:
Q  126 gaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcc 214  Q
    ||||||||  |||||||||||||||||||| |  ||||||||||||  ||||| ||| ||||||||||| | |||||||| ||||||||    
T  4077262 gaagcttctatgtgtgtttcagattgtggcttttgtgaaacggcgcggcatttatttttatcttgtgataccttttcatcattatggcc 4077174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 28060519 - 28060473
Alignment:
Q  171 caacatttgtttctatcttgtgatgctttttcatcgttatggccttt 217  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||    
T  28060519 caacatttgtttttatcttgcgatgctttttcatctttatggccttt 28060473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 33121443 - 33121559
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  33121443 ttggttcaaagacgggtgcttgattcagaagcttctttgtgtgtctcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgatgcat 33121542  T
Q  199 tttcatcgttatggcct 215  Q
    | ||||| |||||||||    
T  33121543 tctcatctttatggcct 33121559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 47537282 - 47537166
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||||||||| ||||||||||  ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  47537282 ttggttcaaagaagggtgcttgatacagaagcttctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctaacttttgatgctt 47537183  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| || ||||||    
T  47537182 tttcatctttttggcct 47537166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 26845872 - 26845769
Alignment:
Q  112 gggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatg 211  Q
    ||||| |||| |||||||||||  |||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||    
T  26845872 gggtgattgattcagaagcttcgatgtgtgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatg 26845773  T
Q  212 gcct 215  Q
    ||||    
T  26845772 gcct 26845769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 19222138 - 19222023
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||| ||||||  |||| ||||| ||||||||||  |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |    
T  19222138 ttggtccaaagaatggtgattgacacagaagcttctatgtgtgtttcagattgtgccatgagtgaaacggcgc-acatttgtttttatcttgtgatgcat 19222040  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  19222039 tttcatctttatggcct 19222023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 50544235 - 50544120
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||| |||||| ||||||| ||| |||| |||||  |||||||||||||||||||| |  ||||||||||||||||||| ||| |||| |||||| | |    
T  50544235 ttggtccaaagaagggtgctagacacagatgcttctatgtgtgtttcagattgtggcttttgtgaaacggcgcaacatttatttttatcatgtgatacct 50544136  T
Q  199 tttcatcgttatggcc 214  Q
    ||||||| ||||||||    
T  50544135 tttcatctttatggcc 50544120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 25341529 - 25341576
Alignment:
Q  156 atgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttca 203  Q
    |||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  25341529 atgagtgaaatggcgcaacatttgtttttatcttgtgatgcattttca 25341576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 23680176 - 23680060
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||||||||| ||||||||||  ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  23680176 ttggttcaaagaagggtgcttgatacagaagcttctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttttaacttgtgatgctt 23680077  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  23680076 tttcatctttatggcct 23680060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 45255962 - 45256067
Alignment:
Q  107 aagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcg 206  Q
    |||| ||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |     
T  45255962 aagaagggtgatcgactcagaagcttctttgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttttatcttgtgatgcattttcacct 45256061  T
Q  207 ttatgg 212  Q
    ||||||    
T  45256062 ttatgg 45256067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 17658845 - 17658729
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||||||||| ||||||||||  || |||||||  |||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |    
T  17658845 ttggttcaaagaagggtgcttgatacaaaagcttccatgtgtgtttcagattgtggcataagtgaaacggcgcaacatttgttcctaacttgtgatgcgt 17658746  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  17658745 tttcatctttatggcct 17658729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 26031492 - 26031390
Alignment:
Q  113 ggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatgg 212  Q
    |||| |||| |||||||||||  |||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||| || ||||||    
T  26031492 ggtgattgattcagaagcttcgatgtgtgtttctgattgtggcatgagagaaacggcgcaacatttgtttttatcctgtgatgttttttcttctttatgg 26031393  T
Q  213 cct 215  Q
    |||    
T  26031392 cct 26031390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 4415830 - 4415932
Alignment:
Q  103 ttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttc 202  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| ||||||||    
T  4415830 ttcaaagacgggtgcttgactcagaagcttctctgtgtgtttcagattgtggcattagtgaaacaacgcaacatttgtttctatcttgtgacgctttttc 4415929  T
Q  203 atc 205  Q
    |||    
T  4415930 atc 4415932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 7000891 - 7001007
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||| | |    
T  7000891 ttggttcaaagaagggtgcttgactcagaagcttctctgtgtgtttcagattgtggcatgagtgaaacggtacaacatttgtttctaacttgtgatacct 7000990  T
Q  199 tttcatcgttatggcct 215  Q
    ||||| | |||||||||    
T  7000991 tttcacctttatggcct 7001007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 4923235 - 4923132
Alignment:
Q  112 gggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatg 211  Q
    ||||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||    
T  4923235 gggtgattgattcagaagcttcgatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttttatcttgtgatgcttttgcttctttatg 4923136  T
Q  212 gcct 215  Q
    ||||    
T  4923135 gcct 4923132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 20208858 - 20208961
Alignment:
Q  112 gggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatg 211  Q
    ||||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| || |||||    
T  20208858 gggtgattgattcagaagcttcgttgtgtgtttcagattgtggcatgagagaaacggcgcaacatttatttttatcttgtgatgctttttcttctttatg 20208957  T
Q  212 gcct 215  Q
    ||||    
T  20208958 gcct 20208961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 6049229 - 6049124
Alignment:
Q  107 aagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcg 206  Q
    |||| ||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |     
T  6049229 aagaagggtgatcgacacagaagcttctttgtgtgtttcagattgtggcatgagtgaaacggcacaacatttgtttttatcttgtgatgcattttcacct 6049130  T
Q  207 ttatgg 212  Q
    ||||||    
T  6049129 ttatgg 6049124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 34874569 - 34874681
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    |||||||||||| || |||||||  || |||||||  ||||||||| ||||||| || |||||||||||||||||||    |||||| |||||||||| |    
T  34874569 ttggttcaaagaaggatgcttgatacaaaagcttctatgtgtgttttagattgtcgcttgagtgaaacggcgcaaca----tttctaacttgtgatgcat 34874664  T
Q  199 tttcatcgttatggcct 215  Q
    ||||||| |||||||||    
T  34874665 tttcatctttatggcct 34874681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 40090353 - 40090238
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||| |||||| ||||| ||||| | ||||||||  |||||||||   |||||||| |  ||||| |||||||||| |||||| ||||||||||| | |    
T  40090353 ttggtccaaagaagggtgattgacaccgaagcttctatgtgtgttttttattgtggcttttgtgaatcggcgcaacacttgtttttatcttgtgatacct 40090254  T
Q  199 tttcatcgttatggcc 214  Q
    ||||||| ||||||||    
T  40090253 tttcatctttatggcc 40090238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 182143 - 182024
Alignment:
Q  99 ttggttcaaagacgggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctt 198  Q
    ||||||||||||||||||||||||   ||||||||  |||||||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||    
T  182143 ttggttcaaagacgggtgcttgacattgaagcttctatgtgtgttacagattgtggcatgaatgaaacagcgcaacatttgtttctttcttgtgatgttt 182044  T
Q  199 tttcatcgttatggcctttg 218  Q
    |||| || ||||||||||||    
T  182043 tttcttctttatggcctttg 182024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 7529 - 7426
Alignment:
Q  112 gggtgcttgactcagaagcttcattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatg 211  Q
    ||||| |||| | |||||||||  |||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |  |||||    
T  7529 gggtgattgatttagaagcttcgatgtgtgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttatttatg 7430  T
Q  212 gcct 215  Q
    ||||    
T  7429 gcct 7426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University