View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_high_6 (Length: 540)
Name: NF5852_high_6
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 43062898 - 43063354
Alignment:
| Q |
1 |
gaattatctgaagctatgtttcacagatatgaattgtggaccaatagtcatcatgttttcactattccttctgttaacgttcacatgcaaagatattaga |
100 |
Q |
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| T |
43062898 |
gaattatctgaagctatgtttcacagatatgaattgtggaccaataatcatcatgttttcactattccttctgttaatgtagatatgcaaagatattgga |
43062997 |
T |
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| Q |
101 |
tacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacacattgcaaaaaga |
200 |
Q |
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| T |
43062998 |
tacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacacattgcaaaaaga |
43063097 |
T |
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| Q |
201 |
agcattcgttgatgtgagatcctcgatatagtcatggattagttctgcacgcccaatcgtcctcatagatgtgatatcctgaacacaacagtttnnnnnn |
300 |
Q |
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| T |
43063098 |
agcattcgttgatgtgagatcctcgatatagtcatggattagttctgcacgcccaatcgtcctcatagatgtgatatcctgaacacaacagtttaaaaaa |
43063197 |
T |
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| Q |
301 |
ngaaagataatttgataagaatcaatattcaacaatttggtaaaccacatggaaaccatcctaagaggaccacagccttttccataagaaacaccagaag |
400 |
Q |
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| T |
43063198 |
a-aaagataatttgataagaatcaatattcaacaatttggtaaaccacatggaaaccatcctaagaggaccacaaccttttccataagaaacaccagaag |
43063296 |
T |
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| Q |
401 |
atcctctaacattattgcagtgatcatatcctgatcagccaccttgtgcagggaacct |
458 |
Q |
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| T |
43063297 |
atcctctaacattattgcagtgatcatatcctgatcagccaccttgtgcagggaacct |
43063354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 457 - 525
Target Start/End: Original strand, 43063381 - 43063449
Alignment:
| Q |
457 |
ctttggcatcaacataagcaatgccactaagttgaccttcttgttgtaaaactaaggaataaaccttgt |
525 |
Q |
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| T |
43063381 |
ctttggcatcaacataagcaatgcaactaagttgaccttcttgttgtaaaactaaggaataaaccttgt |
43063449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 43184178 - 43184082
Alignment:
| Q |
89 |
aaagatattagatacatgtttgagaatcttataataaggatgactgacttatcctatagtgccaaagttcaaaagaattggaattacaagtattatacac |
188 |
Q |
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| T |
43184178 |
aaagatattggatacatgtttgagaatcttataataaggatgaccta-------tatagtgccaaagttcaaaagaattggaattacaagtattagacac |
43184086 |
T |
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