View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_low_11 (Length: 428)
Name: NF5852_low_11
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 33805689 - 33805357
Alignment:
| Q |
1 |
accataatggccttccctttgtttggatctctttcttgttgtatttcaattgtctgctcagggaccacaatgggatctgtttcagacttcccctgctcct |
100 |
Q |
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| T |
33805689 |
accataatggccttccctttgtttggatctctttcttgttgtatttcaattgtctgctcagggaccacaatgggatctgtttgagacttcccctgctcct |
33805590 |
T |
|
| Q |
101 |
ttctgacatactatgtttttgttattgctttctttggcttgactggttccttaattagcatgctcttcatttccttcctttctaacatttttacatatct |
200 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33805589 |
ttctgacatattatgtttttgtttttgctttctttggcttgactggttccttaattagcatgctcttcatttccttcctttctaacatttttacatatct |
33805490 |
T |
|
| Q |
201 |
ctaaatagtatccaatttcgttgcaatgtgaacaataatctagtaggttctcataacctaattccacaaagaaggaaaaacccttcctttttaccaatac |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33805489 |
ctaaatagtatccaattttgttgcaatgtgaacaataatctggtaggttctcataacctaattccacaaagaaggaaaaacccttcctttttaccaatac |
33805390 |
T |
|
| Q |
301 |
cttacttctcaaagattgtgacacatccatatc |
333 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
33805389 |
cttatttctcaaagattgtgacacatccatatc |
33805357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 342 - 424
Target Start/End: Complemental strand, 33805308 - 33805226
Alignment:
| Q |
342 |
ttcttgcatattggccaaaagttctctcccacataggcttagcagtggcagtatcaatgcaaataagtgtacctatgctactc |
424 |
Q |
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| T |
33805308 |
ttcttgcatattggccaaaagttctctcccacataggcttagcagtggcagtatcaatgcaaataagtgtaccaatgctactc |
33805226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 33805362 - 33805305
Alignment:
| Q |
194 |
catatctctaaatagtatccaatttcgttgcaatgtgaacaataatctagtaggttct |
251 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
33805362 |
catatctctaaatagtatccaattttgttgcaatgtgaacaataatctggtaggttct |
33805305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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