View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5852_low_13 (Length: 401)
Name: NF5852_low_13
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 15486370 - 15486748
Alignment:
| Q |
1 |
atgattttcggcattcttttggataatatgcaatactatatttgattgcaaagtaaacagccnnnnnnnnnnnnnnnncatgaaattacaaaattcccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
15486370 |
atgattttcggcattcttttggataatatgcaatactatatttgattgcaaagtaaacagccaaaaaaaaaaaaa---catgaaataacaaaattcccac |
15486466 |
T |
|
| Q |
101 |
ataagattagtctcattttgtcctccatcactattagtacaaacgtgtagaataaaggggagtcgatgtgctaaagattatttatgttttatttcgggta |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15486467 |
ataagattagtcccattttgtcctccatcactattagtacaaacgtgtagaataaaggggagtcgatgtgctaaagattatttatgttttatttcgggta |
15486566 |
T |
|
| Q |
201 |
tgtagttgaggcaactcaattagataaatttagagaaatactaagaaggaatagtaattaatccaaatcccaaattaagagatgtaataaatctgaaaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15486567 |
tgtagttgaggcaactcaattagataaatttagagaaatactaagaaggaatagtaattaatccaaatcccaaattaagagatgtaataaatctgaacac |
15486666 |
T |
|
| Q |
301 |
ttaagactgaccttagctccttcatctccaacaggattgcctgaaagatcaagagtctttagtgtgatgtttgactgaagaa |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15486667 |
ttaagactgaccttagctccttcatctccaacaggattgcctgaaagatcaagagtcttcagtgtgatgtttgactgaagaa |
15486748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University