View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_low_15 (Length: 368)
Name: NF5852_low_15
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 48633289 - 48632951
Alignment:
| Q |
19 |
caagatatgataaccactaagtagtatcaacccgtgcatagacccattatgatgatatataataatgaacgacttttaagagggcacaaacacattattg |
118 |
Q |
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| T |
48633289 |
caagatatgataaccactaagtagtatcaacccgtgcatagacccattatgatgatatataataatgaacgacttttaagagggcacaaacacattattg |
48633190 |
T |
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| Q |
119 |
tataattgaagtgtacgttaattcttgatattttgagttttgattcctaacgaccccacaattttttagtgcatttgtcctagctagagttccatcagct |
218 |
Q |
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| T |
48633189 |
tataattgaagtgtacgttaattcttgatattttgagttttgattcctaacgaccccacaattttttagtgcatttgtcctagctagagttccatcagct |
48633090 |
T |
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| Q |
219 |
tccatatgctctatttgtatttttatattgtaatcacagtcacttatactatgcttacttcaatggagttgtagaagtttggtttttaaccttaaagtga |
318 |
Q |
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| T |
48633089 |
tccatatgctctatttgtatttttatattgtaatcacagtcacttatactatgcttacttcaatggagttgtagaagtttggtttttaaccttaaagtga |
48632990 |
T |
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| Q |
319 |
atagaatagaatatcacacaagctgtatagtatttgtgatgatg |
362 |
Q |
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|||| |||||||||||||| |||||||||||||||||||| |
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| T |
48632989 |
atag-----aatatcacacaagcggtatagtatttgtgatgatg |
48632951 |
T |
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