View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5852_low_19 (Length: 328)

Name: NF5852_low_19
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5852_low_19
NF5852_low_19
[»] chr5 (13 HSPs)
chr5 (1-328)||(15486043-15486369)
chr5 (61-116)||(10205024-10205079)
chr5 (249-288)||(16773893-16773932)
chr5 (252-288)||(8278226-8278262)
chr5 (251-286)||(30109262-30109297)
chr5 (251-281)||(12877781-12877811)
chr5 (250-288)||(28285339-28285377)
chr5 (249-286)||(21589374-21589411)
chr5 (249-286)||(24907575-24907612)
chr5 (249-286)||(29075867-29075904)
chr5 (249-277)||(4793042-4793070)
chr5 (250-278)||(17028225-17028253)
chr5 (250-286)||(22737169-22737205)
[»] chr8 (15 HSPs)
chr8 (122-186)||(10723795-10723859)
chr8 (249-288)||(8485085-8485124)
chr8 (251-288)||(44864217-44864254)
chr8 (250-281)||(7347924-7347955)
chr8 (249-288)||(28783146-28783185)
chr8 (249-288)||(29858000-29858039)
chr8 (250-288)||(1100584-1100622)
chr8 (250-288)||(3624666-3624704)
chr8 (249-287)||(16852426-16852464)
chr8 (250-288)||(44780065-44780103)
chr8 (258-287)||(29431106-29431135)
chr8 (250-287)||(40791847-40791884)
chr8 (249-277)||(968448-968476)
chr8 (253-281)||(34966808-34966836)
chr8 (248-288)||(45053443-45053483)
[»] chr7 (21 HSPs)
chr7 (47-116)||(7386188-7386257)
chr7 (120-186)||(28907659-28907724)
chr7 (249-296)||(43590993-43591040)
chr7 (249-287)||(41487445-41487483)
chr7 (249-286)||(3968607-3968644)
chr7 (249-286)||(30579421-30579458)
chr7 (250-287)||(41519217-41519254)
chr7 (252-288)||(2446397-2446433)
chr7 (248-288)||(48772023-48772063)
chr7 (28-115)||(7246385-7246472)
chr7 (249-288)||(11720911-11720950)
chr7 (249-288)||(27313685-27313724)
chr7 (147-186)||(34746875-34746914)
chr7 (250-288)||(45228976-45229014)
chr7 (251-288)||(5668522-5668559)
chr7 (249-286)||(21558214-21558251)
chr7 (116-153)||(48771132-48771169)
chr7 (28-56)||(7386179-7386207)
chr7 (128-168)||(16347494-16347534)
chr7 (249-277)||(22932674-22932702)
chr7 (248-288)||(45709659-45709699)
[»] chr2 (11 HSPs)
chr2 (25-104)||(13179594-13179673)
chr2 (250-287)||(38854414-38854451)
chr2 (249-288)||(24144760-24144799)
chr2 (249-288)||(25637237-25637276)
chr2 (249-288)||(34310837-34310876)
chr2 (250-288)||(1435150-1435188)
chr2 (250-288)||(26773088-26773126)
chr2 (249-287)||(37480161-37480199)
chr2 (249-281)||(12982454-12982486)
chr2 (249-281)||(37971981-37972013)
chr2 (249-281)||(42602640-42602672)
[»] chr1 (17 HSPs)
chr1 (63-116)||(14305205-14305258)
chr1 (49-99)||(15869681-15869731)
chr1 (249-287)||(36124919-36124957)
chr1 (250-287)||(12587356-12587393)
chr1 (115-172)||(14305544-14305600)
chr1 (249-287)||(3799992-3800030)
chr1 (126-192)||(3955532-3955597)
chr1 (250-288)||(6122881-6122919)
chr1 (250-288)||(7743276-7743314)
chr1 (120-186)||(33654288-33654353)
chr1 (248-281)||(7219876-7219909)
chr1 (250-287)||(25297859-25297896)
chr1 (249-286)||(50901667-50901704)
chr1 (249-281)||(1094611-1094643)
chr1 (252-280)||(18037572-18037600)
chr1 (252-288)||(27476722-27476758)
chr1 (252-288)||(45235329-45235365)
[»] chr6 (9 HSPs)
chr6 (248-288)||(18562589-18562629)
chr6 (249-287)||(24641142-24641180)
chr6 (249-286)||(18263926-18263963)
chr6 (249-288)||(8597698-8597737)
chr6 (249-288)||(21418556-21418595)
chr6 (250-290)||(6758371-6758411)
chr6 (250-286)||(20213128-20213164)
chr6 (250-286)||(22107151-22107187)
chr6 (250-286)||(31622944-31622980)
[»] scaffold0258 (1 HSPs)
scaffold0258 (249-288)||(15274-15313)
[»] chr4 (22 HSPs)
chr4 (61-116)||(9081551-9081606)
chr4 (250-287)||(37720166-37720203)
chr4 (249-281)||(12793869-12793901)
chr4 (250-281)||(7949412-7949443)
chr4 (249-288)||(17816595-17816634)
chr4 (249-288)||(49938787-49938826)
chr4 (250-288)||(8030155-8030193)
chr4 (249-287)||(29312216-29312254)
chr4 (248-286)||(47230600-47230638)
chr4 (250-280)||(47386750-47386780)
chr4 (249-286)||(28635782-28635819)
chr4 (248-277)||(35818174-35818203)
chr4 (251-288)||(37274410-37274447)
chr4 (251-288)||(51346429-51346466)
chr4 (250-287)||(56429888-56429925)
chr4 (252-288)||(3350420-3350456)
chr4 (248-288)||(17618366-17618406)
chr4 (249-281)||(26356903-26356935)
chr4 (25-118)||(29171636-29171731)
chr4 (249-281)||(40283944-40283976)
chr4 (249-281)||(49262642-49262674)
chr4 (250-286)||(51954201-51954237)
[»] chr3 (13 HSPs)
chr3 (116-167)||(21138814-21138865)
chr3 (118-209)||(55258383-55258474)
chr3 (250-288)||(52769934-52769972)
chr3 (249-289)||(14339696-14339736)
chr3 (121-181)||(21409431-21409491)
chr3 (250-281)||(54990789-54990820)
chr3 (118-209)||(55258642-55258733)
chr3 (250-288)||(2667949-2667987)
chr3 (250-288)||(8075078-8075116)
chr3 (250-288)||(36015535-36015573)
chr3 (250-288)||(49397492-49397530)
chr3 (250-287)||(10499061-10499098)
chr3 (249-281)||(44069844-44069876)
[»] scaffold0018 (1 HSPs)
scaffold0018 (136-186)||(32209-32259)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 15486043 - 15486369
Alignment:
Q  1 aggcacagtaggtttgattaatgtttagaaaataaaataatatctcataatatcttaaagtatcttggtttatctcctaggatcagttttcaatcttagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15486043 aggcacagtaggtttgattaatgtttagaaaataaaataatatctcataatatcttagagtatcttggtttatctcctaggatcagttttcaatcttagc 15486142  T
Q  101 atatctaagattatctatcaagtcagtatcaagttattatcaattatattcaaagttcttattatttactctcatccttttatctagaaccacacaacgt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15486143 atatctaagattatctatcaagtcggtatcaagttattatcaattatattcaaagttcttattatttactctcatccttttatctagaaccacacaacgt 15486242  T
Q  201 caacaattaattaattccaaaagtaagttataacttaacttggtttgaccaatttaggtgggctaatttagcttcttcaaataaaaaacttaacttggtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15486243 caacaattaattaattccaaaagtaagttataacttaacttggtttgaccaatttaggtgggctaatttagcttcttcaaataaaaaacttaacttggtt 15486342  T
Q  301 tgacctattaagattaaactccaataaa 328  Q
    ||||||||||| ||||||||||||||||    
T  15486343 tgacctattaa-attaaactccaataaa 15486369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 10205079 - 10205024
Alignment:
Q  61 tatcttggtttatctcctaggatcagttttcaatcttagcatatctaagattatct 116  Q
    |||||||||||| | |||||||| |||||||||||||||||||||| |||||||||    
T  10205079 tatcttggtttagcccctaggattagttttcaatcttagcatatcttagattatct 10205024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 16773893 - 16773932
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  16773893 ccaatttaggtgggctaatttagcttcttcaaaaaaaaaa 16773932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 8278262 - 8278226
Alignment:
Q  252 atttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||||||||||||||| ||||||    
T  8278262 atttaggtgggctaatttagcttcttcaaaaaaaaaa 8278226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 30109297 - 30109262
Alignment:
Q  251 aatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    ||||||||||||||||||||||||||||||| ||||    
T  30109297 aatttaggtgggctaatttagcttcttcaaaaaaaa 30109262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 281
Target Start/End: Original strand, 12877781 - 12877811
Alignment:
Q  251 aatttaggtgggctaatttagcttcttcaaa 281  Q
    |||||||||||||||||||||||||||||||    
T  12877781 aatttaggtgggctaatttagcttcttcaaa 12877811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 28285339 - 28285377
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  28285339 caatttgggtgggctaatttagcttcttcaaaaaaaaaa 28285377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 21589374 - 21589411
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  21589374 ccaatttaggtgggctagtttagcttcttcaaaaaaaa 21589411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 24907575 - 24907612
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  24907575 ccaatttaggtgggctaatttagcttattcaaaaaaaa 24907612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 29075867 - 29075904
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  29075867 ccaatttagatgggctaatttagcttcttcaaaaaaaa 29075904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 4793070 - 4793042
Alignment:
Q  249 ccaatttaggtgggctaatttagcttctt 277  Q
    |||||||||||||||||||||||||||||    
T  4793070 ccaatttaggtgggctaatttagcttctt 4793042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 17028253 - 17028225
Alignment:
Q  250 caatttaggtgggctaatttagcttcttc 278  Q
    |||||||||||||||||||||||||||||    
T  17028253 caatttaggtgggctaatttagcttcttc 17028225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 22737169 - 22737205
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  22737169 caatttaggtgggttaatttagcttcttcaaaaaaaa 22737205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 10723859 - 10723795
Alignment:
Q  122 gtcagtatcaagttattatcaattatattcaaagttcttattatttactctcatccttttatcta 186  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||    
T  10723859 gtcagtatcaagttattatcaataatattcaaagttcttattattttctctcgtccatttatcta 10723795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 8485085 - 8485124
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  8485085 ccaatttaggtgggctaatttagcttcttcaaaaaaaaaa 8485124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 44864254 - 44864217
Alignment:
Q  251 aatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  44864254 aatttaggtgggctaatttagcttcttcaaaaaaaaaa 44864217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 281
Target Start/End: Original strand, 7347924 - 7347955
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaa 281  Q
    ||||||||||||||||||||||||||||||||    
T  7347924 caatttaggtgggctaatttagcttcttcaaa 7347955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 28783146 - 28783185
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  28783146 ccaatttgggtgggctaatttagcttcttcaaaaaaaaaa 28783185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 29858039 - 29858000
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  29858039 ccaatttaggtgggctaatttagctttttcaaaaaaaaaa 29858000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 1100584 - 1100622
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  1100584 caatttagatgggctaatttagcttcttcaaaaaaaaaa 1100622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 3624666 - 3624704
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  3624666 caatttaggtgggctaatttagctttttcaaaaaaaaaa 3624704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 16852426 - 16852464
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  16852426 ccaatttaggtgggctattttagcttcttcaaaaaaaaa 16852464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 44780103 - 44780065
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  44780103 caatttgggtgggctaatttagcttcttcaaaaaaaaaa 44780065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 287
Target Start/End: Original strand, 29431106 - 29431135
Alignment:
Q  258 gtgggctaatttagcttcttcaaataaaaa 287  Q
    ||||||||||||||||||||||||||||||    
T  29431106 gtgggctaatttagcttcttcaaataaaaa 29431135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 40791884 - 40791847
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  40791884 caatttaagtgggctaatttagcttcttcaaaaaaaaa 40791847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 968448 - 968476
Alignment:
Q  249 ccaatttaggtgggctaatttagcttctt 277  Q
    |||||||||||||||||||||||||||||    
T  968448 ccaatttaggtgggctaatttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 34966836 - 34966808
Alignment:
Q  253 tttaggtgggctaatttagcttcttcaaa 281  Q
    |||||||||||||||||||||||||||||    
T  34966836 tttaggtgggctaatttagcttcttcaaa 34966808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 45053483 - 45053443
Alignment:
Q  248 accaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||| ||||| ||||||||| ||||||    
T  45053483 accaatttaggtgggctagtttagattcttcaaaaaaaaaa 45053443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 7386188 - 7386257
Alignment:
Q  47 ataatatcttaaagtatcttggtttatctcctaggatcagttttcaatcttagcatatctaagattatct 116  Q
    ||||||||| | | ||||||| || |||||||||| |||||||||||||||||||||||| |||||||||    
T  7386188 ataatatctcataatatcttgattaatctcctaggttcagttttcaatcttagcatatcttagattatct 7386257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 28907724 - 28907659
Alignment:
Q  120 aagtcagtatcaagttattatcaattatattcaaagttcttattatttactctcatccttttatcta 186  Q
    |||| ||||||||||||||||| || |||||| |||||||||||||||  |||||||||||||||||    
T  28907724 aagttagtatcaagttattatcgataatattcgaagttcttattattt-ttctcatccttttatcta 28907659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 43590993 - 43591040
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaacttaactt 296  Q
    |||||| |||||||||||||||||||||||||| |||||| |||||||    
T  43590993 ccaattaaggtgggctaatttagcttcttcaaaaaaaaaaattaactt 43591040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 41487445 - 41487483
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  41487445 ccaatttaggtgggctaatttagcttcttcaaaaaaaaa 41487483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 3968644 - 3968607
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  3968644 ccaatttgggtgggctaatttagcttcttcaaataaaa 3968607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 30579421 - 30579458
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  30579421 ccaatttaggtgggctaatttagcttcttcaaaaaaaa 30579458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 41519254 - 41519217
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    |||||||||||||||||||||||||||||||| |||||    
T  41519254 caatttaggtgggctaatttagcttcttcaaaaaaaaa 41519217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 2446397 - 2446433
Alignment:
Q  252 atttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||||||||||||||| ||||||    
T  2446397 atttaggtgggctaatttagcttcttcaaaaaaaaaa 2446433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 48772023 - 48772063
Alignment:
Q  248 accaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  48772023 accaatttaggtgggctaatttagcttcttaaaaaaaaaaa 48772063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 7246385 - 7246472
Alignment:
Q  28 gaaaataaaataatatctcataatatcttaaagtatcttggtttatctcctaggatcagttttcaatcttagcatatctaagattatc 115  Q
    |||||||| | || ||||||| ||  |||| | |||||| ||| |||| || ||||||||||| ||||||||||||||| ||||||||    
T  7246385 gaaaataagagaacatctcattatggcttagaatatctttgttaatcttcttggatcagttttgaatcttagcatatcttagattatc 7246472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 11720950 - 11720911
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  11720950 ccaatttgggtgggctaatttagcttcttcaaaaaaaaaa 11720911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 27313724 - 27313685
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  27313724 ccaatttaggtgagctaatttagcttcttcaaaaaaaaaa 27313685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 34746914 - 34746875
Alignment:
Q  147 tattcaaagttcttattatttactctcatccttttatcta 186  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  34746914 tattcaaagttcttattattttctctcctccttttatcta 34746875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 45229014 - 45228976
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  45229014 caatttaagtgggctaatttagcttcttcaaaaaaaaaa 45228976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 5668559 - 5668522
Alignment:
Q  251 aatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  5668559 aatttatgtgggctaatttagcttcttcaaaaaaaaaa 5668522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 21558214 - 21558251
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  21558214 ccaatttaggtgggttaatttagcttcttcaaaaaaaa 21558251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 48771169 - 48771132
Alignment:
Q  116 tatcaagtcagtatcaagttattatcaattatattcaa 153  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  48771169 tatcaagtcagtatcaagtgattatcaatgatattcaa 48771132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 7386179 - 7386207
Alignment:
Q  28 gaaaataaaataatatctcataatatctt 56  Q
    |||||||||||||||||||||||||||||    
T  7386179 gaaaataaaataatatctcataatatctt 7386207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 16347534 - 16347494
Alignment:
Q  128 atcaagttattatcaattatattcaaagttcttattattta 168  Q
    ||||| ||||||||||| | |||||||||||||||||||||    
T  16347534 atcaaattattatcaataaaattcaaagttcttattattta 16347494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 22932702 - 22932674
Alignment:
Q  249 ccaatttaggtgggctaatttagcttctt 277  Q
    |||||||||||||||||||||||||||||    
T  22932702 ccaatttaggtgggctaatttagcttctt 22932674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 45709699 - 45709659
Alignment:
Q  248 accaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||||||||||||||| |||||||||| ||| ||||||    
T  45709699 accaatttaggtgggctaacttagcttctttaaaaaaaaaa 45709659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 13179594 - 13179673
Alignment:
Q  25 ttagaaaataaaataatatctcataatatcttaaagtatcttggtttatctcctaggatcagttttcaatcttagcatat 104  Q
    ||||||||||||||||||||| ||| |||   ||| |||||| |||||||||||||||||||||| |||| | |||||||    
T  13179594 ttagaaaataaaataatatctgatattatgccaaattatctttgtttatctcctaggatcagtttccaatataagcatat 13179673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 38854451 - 38854414
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    |||||||||||||||||||||||||||||||| |||||    
T  38854451 caatttaggtgggctaatttagcttcttcaaaaaaaaa 38854414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 24144760 - 24144799
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  24144760 ccaatttaggtgggctaatttagcttcctcaaaaaaaaaa 24144799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 25637237 - 25637276
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  25637237 ccaatttaggtgggctaatttaacttcttcaaaaaaaaaa 25637276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 34310837 - 34310876
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  34310837 ccaatttaggtgggttaatttagcttcttcaaaaaaaaaa 34310876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 1435150 - 1435188
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  1435150 caatttgggtgggctaatttagcttcttcaaaaaaaaaa 1435188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 26773126 - 26773088
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  26773126 caatttgggtgggctaatttagcttcttcaaaaaaaaaa 26773088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 37480161 - 37480199
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  37480161 ccaatttgggtgggctaatttagcttcttcaaaaaaaaa 37480199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 12982486 - 12982454
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaa 281  Q
    ||||||||||| |||||||||||||||||||||    
T  12982486 ccaatttaggtaggctaatttagcttcttcaaa 12982454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 37971981 - 37972013
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaa 281  Q
    |||||||||||||||||||||||||||| ||||    
T  37971981 ccaatttaggtgggctaatttagcttctacaaa 37972013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 42602640 - 42602672
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaa 281  Q
    ||||||| |||||||||||||||||||||||||    
T  42602640 ccaatttgggtgggctaatttagcttcttcaaa 42602672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 14305205 - 14305258
Alignment:
Q  63 tcttggtttatctcctaggatcagttttcaatcttagcatatctaagattatct 116  Q
    |||||||||||||||| |||||||||||||||||||||||  || |||||||||    
T  14305205 tcttggtttatctcctgggatcagttttcaatcttagcatgacttagattatct 14305258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 15869681 - 15869731
Alignment:
Q  49 aatatcttaaagtatcttggtttatctcctaggatcagttttcaatcttag 99  Q
    ||||||| ||| ||| |||||||||||| ||||||||||||||||||||||    
T  15869681 aatatctgaaaatatattggtttatctcttaggatcagttttcaatcttag 15869731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 36124919 - 36124957
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  36124919 ccaatttaggtgggctaatttagcttcttcaaaaaaaaa 36124957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 12587356 - 12587393
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    |||||||||||||||||||||||||||||||| |||||    
T  12587356 caatttaggtgggctaatttagcttcttcaaaaaaaaa 12587393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 14305544 - 14305600
Alignment:
Q  115 ctatcaagtcagtatcaagttattatcaattatattcaaagttcttattatttactct 172  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||||| ||||| ||||    
T  14305544 ctatcaagtcaatatcaagttattatcaataatattc-aagttcttactattttctct 14305600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 3799992 - 3800030
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  3799992 ccaatttaggtgggctaatttagcttcttaaaaaaaaaa 3800030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 3955597 - 3955532
Alignment:
Q  126 gtatcaagttattatcaattatattcaaagttcttattatttactctcatccttttatctagaacca 192  Q
    ||||||||||||||||||  ||||| |||||||||||||||| ||||| |  ||||||||| |||||    
T  3955597 gtatcaagttattatcaacaatattgaaagttcttattattt-ctctccttgttttatctaaaacca 3955532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 6122881 - 6122919
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  6122881 caatttgggtgggctaatttagcttcttcaaaaaaaaaa 6122919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 7743314 - 7743276
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  7743314 caatttaggtgggctaacttagcttcttcaaacaaaaaa 7743276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 33654353 - 33654288
Alignment:
Q  120 aagtcagtatcaagttattatcaattatattcaaagttcttattatttactctcatccttttatcta 186  Q
    ||||||| |||| |||||||||||| | ||||||||||||||||| || ||||| ||| ||||||||    
T  33654353 aagtcagcatcatgttattatcaatcacattcaaagttcttattactt-ctctcctccatttatcta 33654288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 7219909 - 7219876
Alignment:
Q  248 accaatttaggtgggctaatttagcttcttcaaa 281  Q
    |||||||||||||| |||||||||||||||||||    
T  7219909 accaatttaggtggactaatttagcttcttcaaa 7219876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 25297859 - 25297896
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  25297859 caatttaggtgggataatttagcttcttcaaaaaaaaa 25297896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 50901667 - 50901704
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  50901667 ccaatttaggtgggctaatttagcttcttaaaaaaaaa 50901704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 1094611 - 1094643
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaa 281  Q
    |||||||||||||||||||||| ||||||||||    
T  1094611 ccaatttaggtgggctaatttaacttcttcaaa 1094643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 18037600 - 18037572
Alignment:
Q  252 atttaggtgggctaatttagcttcttcaa 280  Q
    |||||||||||||||||||||||||||||    
T  18037600 atttaggtgggctaatttagcttcttcaa 18037572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 27476758 - 27476722
Alignment:
Q  252 atttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  27476758 atttaggtgggctaatttagcttcttaaaaaaaaaaa 27476722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 45235365 - 45235329
Alignment:
Q  252 atttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  45235365 atttaggtgggctaatttagcttcttaaaaaaaaaaa 45235329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 18562629 - 18562589
Alignment:
Q  248 accaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  18562629 accaatttaggtgggctaatttagcttcttcaaaaaaaaaa 18562589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 24641180 - 24641142
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  24641180 ccaatttaggtgggctaatttaacttcttcaaataaaaa 24641142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 18263926 - 18263963
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  18263926 ccaatttaggtgggctaatttagcttcttcaaaaaaaa 18263963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 8597737 - 8597698
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  8597737 ccaatttgggtgggctaatttagcttcttcaaaaaaaaaa 8597698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 21418556 - 21418595
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  21418556 ccaattaaggtgggctaatttagcttcttcaaaaaaaaaa 21418595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 6758411 - 6758371
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaact 290  Q
    |||||||||||||| ||||||||||||||||| ||| ||||    
T  6758411 caatttaggtgggcaaatttagcttcttcaaaaaaataact 6758371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 20213128 - 20213164
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  20213128 caatttgggtgggctaatttagcttcttcaaaaaaaa 20213164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 22107151 - 22107187
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  22107151 caatttgggtgggctaatttagcttcttcaaaaaaaa 22107187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 31622980 - 31622944
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  31622980 caatttgggtgggctaatttagcttcttcaaaaaaaa 31622944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 15313 - 15274
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  15313 ccaatttaggtgggctaatttagcttcttcaaagaaaaaa 15274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 9081551 - 9081606
Alignment:
Q  61 tatcttggtttatctcctaggatcagttttcaatcttagcatatctaagattatct 116  Q
    ||||||||| ||| ||||| |||||||||||||||||||||||||| |||| ||||    
T  9081551 tatcttggtgtatatcctaagatcagttttcaatcttagcatatcttagatgatct 9081606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 37720203 - 37720166
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    |||||||||||||||||||||||||||||||| |||||    
T  37720203 caatttaggtgggctaatttagcttcttcaaacaaaaa 37720166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 12793901 - 12793869
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaa 281  Q
    |||||||||||||||||||||||||||||||||    
T  12793901 ccaatttaggtgggctaatttagcttcttcaaa 12793869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 281
Target Start/End: Complemental strand, 7949443 - 7949412
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaa 281  Q
    ||||||||||||||||||||||||||||||||    
T  7949443 caatttaggtgggctaatttagcttcttcaaa 7949412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 17816595 - 17816634
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  17816595 ccaatttaggtaggctaatttagcttcttcaaaaaaaaaa 17816634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 49938826 - 49938787
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  49938826 ccaatttaggtgggttaatttagcttcttcaaaaaaaaaa 49938787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 8030193 - 8030155
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  8030193 caatttgggtgggctaatttagcttcttcaaaaaaaaaa 8030155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 29312254 - 29312216
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  29312254 ccaatttaggtgggctaatttagctttttcaaaaaaaaa 29312216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 47230600 - 47230638
Alignment:
Q  248 accaatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  47230600 accaatttaggtgggctaatttatcttcttcaaaaaaaa 47230638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 280
Target Start/End: Complemental strand, 47386780 - 47386750
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaa 280  Q
    |||||||||||||||||||||||||||||||    
T  47386780 caatttaggtgggctaatttagcttcttcaa 47386750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 28635782 - 28635819
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  28635782 ccaatttgggtgggctaatttagcttcttcaaaaaaaa 28635819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 35818174 - 35818203
Alignment:
Q  248 accaatttaggtgggctaatttagcttctt 277  Q
    ||||||||||||||||||||||||||||||    
T  35818174 accaatttaggtgggctaatttagcttctt 35818203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 37274447 - 37274410
Alignment:
Q  251 aatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  37274447 aatttaagtgggctaatttagcttcttcaaaaaaaaaa 37274410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 51346466 - 51346429
Alignment:
Q  251 aatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  51346466 aatttaggtgggctagtttagcttcttcaaaaaaaaaa 51346429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 56429925 - 56429888
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  56429925 caatttaggtgggctaatttagcttcttaaaaaaaaaa 56429888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 3350456 - 3350420
Alignment:
Q  252 atttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  3350456 atttaggtgggctaatttagcttctttaaaaaaaaaa 3350420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 17618366 - 17618406
Alignment:
Q  248 accaatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||| ||||| ||||||||||||||| ||||||    
T  17618366 accaatttaggttggctagtttagcttcttcaaaaaaaaaa 17618406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 26356903 - 26356935
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaa 281  Q
    ||||||||||||||||| |||||||||||||||    
T  26356903 ccaatttaggtgggctagtttagcttcttcaaa 26356935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 29171731 - 29171636
Alignment:
Q  25 ttagaaaataaaataatatctcataatatcttaaagtatctt--ggtttatctcctaggatcagttttcaatcttagcatatctaagattatctat 118  Q
    |||||| |||||||||||||||  |||||  || | ||||||   || ||||||||||||| |||||||||||| ||  ||||| |||||||||||    
T  29171731 ttagaatataaaataatatctctcaatatgctacaatatcttagtgtatatctcctaggattagttttcaatctaagtgtatcttagattatctat 29171636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 40283976 - 40283944
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaa 281  Q
    |||||||||||||||||||||| ||||||||||    
T  40283976 ccaatttaggtgggctaatttaacttcttcaaa 40283944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 49262674 - 49262642
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaa 281  Q
    ||||||||||||||||||||||| |||||||||    
T  49262674 ccaatttaggtgggctaatttagtttcttcaaa 49262642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 51954201 - 51954237
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaa 286  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  51954201 caatttgggtgggctaatttagcttcttcaaaaaaaa 51954237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 21138865 - 21138814
Alignment:
Q  116 tatcaagtcagtatcaagttattatcaattatattcaaagttcttattattt 167  Q
    ||||||||| |||||||||||||| ||||  |||||||||||||||||||||    
T  21138865 tatcaagtctgtatcaagttattaacaatagtattcaaagttcttattattt 21138814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 55258383 - 55258474
Alignment:
Q  118 tcaagtcagtatcaagttattatcaattatattcaaagttcttattatttactctcatccttttatctagaaccacacaacgtcaacaatta 209  Q
    ||||||||||||||||| ||||||||| || |||| | || ||||||||| ||| |||| ||| ||||| || | |||||| ||||||||||    
T  55258383 tcaagtcagtatcaagtaattatcaataattttcacaatttttattattttctcccatcttttaatctaaaatcccacaacttcaacaatta 55258474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 52769972 - 52769934
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  52769972 caatttaggtgggctaatttagcttcttcaaaaaaaaaa 52769934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 14339696 - 14339736
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaataaaaaac 289  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  14339696 ccaattaaggtgggctaatttagcttcttcaaaaaaaaaac 14339736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 21409491 - 21409431
Alignment:
Q  121 agtcagtatcaagttattatcaattatattcaaagttcttattatttactctcatcctttt 181  Q
    ||||| |||||| ||||||||||| |||| ||||||||||||||||| || || |||||||    
T  21409491 agtcaatatcaaattattatcaataatatccaaagttcttattattttctgtcctcctttt 21409431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 281
Target Start/End: Original strand, 54990789 - 54990820
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaa 281  Q
    ||||||||||||||||||||||||||||||||    
T  54990789 caatttaggtgggctaatttagcttcttcaaa 54990820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 55258642 - 55258733
Alignment:
Q  118 tcaagtcagtatcaagttattatcaattatattcaaagttcttattatttactctcatccttttatctagaaccacacaacgtcaacaatta 209  Q
    ||||||||||||||||| |||||||||  | |||| | || ||||||||| ||| |||| ||| ||||| || | |||||| ||||||||||    
T  55258642 tcaagtcagtatcaagtaattatcaatatttttcacaatttttattattttctcccatcttttaatctaaaatcccacaacttcaacaatta 55258733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 2667949 - 2667987
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  2667949 caatttaggtgggctagtttagcttcttcaaaaaaaaaa 2667987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 8075116 - 8075078
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  8075116 caatttgggtgggctaatttagcttcttcaaaaaaaaaa 8075078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 36015535 - 36015573
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  36015535 caatttaggtgggctaattttgcttcttcaaaaaaaaaa 36015573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 49397530 - 49397492
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaaa 288  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  49397530 caatttaggtggactaatttagcttcttcaaaaaaaaaa 49397492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 10499098 - 10499061
Alignment:
Q  250 caatttaggtgggctaatttagcttcttcaaataaaaa 287  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  10499098 caatttgggtgggctaatttagcttcttcaaaaaaaaa 10499061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 44069844 - 44069876
Alignment:
Q  249 ccaatttaggtgggctaatttagcttcttcaaa 281  Q
    ||||||||||||||||| |||||||||||||||    
T  44069844 ccaatttaggtgggctagtttagcttcttcaaa 44069876  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 32209 - 32259
Alignment:
Q  136 attatcaattatattcaaagttcttattatttactctcatccttttatcta 186  Q
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T  32209 attatcaatgatattcaaagttcatattattttctctcctccttttatcta 32259  T

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