View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_low_2 (Length: 632)
Name: NF5852_low_2
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 146 - 378
Target Start/End: Complemental strand, 31896204 - 31895972
Alignment:
| Q |
146 |
tacttgacctagctactactattgccttaaaaaacttttcaagatgtacttttaattctactcaccaatatgtctagttccacttttgaaagtgtcgaaa |
245 |
Q |
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| T |
31896204 |
tacttgacctagctactactattgccttaaaaaacttttcaagatgtacttttaattctactcaccaatatgtctagttacacttttggaagagtcgaaa |
31896105 |
T |
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| Q |
246 |
ttcattttagagatataaatttaattttgacatgtctaaatgtttttcaataagacaatattttttcattaccaatcatgctttaacgaaacgcaagaat |
345 |
Q |
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| T |
31896104 |
ttcattttagagatataaatttaattttaacatgtctaaatgtttttcaataagataatgttttttcattaccaatcgtgctttaacgaaacgcaagaat |
31896005 |
T |
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| Q |
346 |
aatctttcaccattagatttatctccgaccaca |
378 |
Q |
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| T |
31896004 |
aatctttcatcattagatttatctccaaccaca |
31895972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 31896378 - 31896242
Alignment:
| Q |
16 |
caattaccactttcaacgtgttcattaagttct-----ttttagatgcttgagtgtagtagtgtgtaaccaagacaaactatgtttacagttgtatctac |
110 |
Q |
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| T |
31896378 |
caattaccactttcaacatgttcattaagttctataatttttagatgcttgagtgtagtagtgtgtaaccaagacaaactatgtttacagttgtatctac |
31896279 |
T |
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| Q |
111 |
ttgacttgaataaatgcaaaagattgcaatctgggta |
147 |
Q |
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| T |
31896278 |
ttgacttgaataaatgcaaaagattgcaatctgggta |
31896242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 543 - 627
Target Start/End: Complemental strand, 31895868 - 31895784
Alignment:
| Q |
543 |
catgacttctaactaaaatttatcattcatctcatttttatggttattgatgcaaacatataaatcattccacattcatctcact |
627 |
Q |
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| T |
31895868 |
catgacttctaactaaaatttatcattcatctcatttttatggttattgatgcaaacatataaatcatttcacattcatctcact |
31895784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 7252316 - 7252380
Alignment:
| Q |
314 |
ttaccaatcatgctttaacgaaacgcaagaataatctttcaccattagatttatctccgaccaca |
378 |
Q |
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| T |
7252316 |
ttacgaatcatggtttaacgaaacgcaagaataattcttcattattagatttatctccgaccaca |
7252380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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