View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_low_22 (Length: 299)
Name: NF5852_low_22
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 42275404 - 42275122
Alignment:
| Q |
1 |
aactcatttagtgaaaaatttcaaaacaaatttgactataatcatacattaaattggtcattttaagattagtgacgttgtttgtgacatatttt-gctt |
99 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
42275404 |
aactcatttagtgaaaaaattcaaaacaaatttgactataatcatacattaaattggtcattttaagattagtgacgttgtttgtgacatttttttgctt |
42275305 |
T |
|
| Q |
100 |
gtaggtgcatatttcattggtggggaaagataagatgagagtgtcatggataacggaagacaaggaaacagtaactatggttgagtatggaaccaaagca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42275304 |
gtaggtgcatatttcattggtggggaaagataagatgagagtgtcatggataacggaagacaaggaaacagaaactatggttgagtatggaaccaaagca |
42275205 |
T |
|
| Q |
200 |
ggggagtatagtgaaaaaacaatnnnnnnncatacatcgtaccaatattttttctacaattctggaaaaatacacaatgctgt |
282 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42275204 |
ggggagtatagtgaaaaaacaatgggggagcatacatcgtaccaatattttttctacaattctggaaaaatacacaatgctgt |
42275122 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 26275401 - 26275458
Alignment:
| Q |
102 |
aggtgcatatttcattggtggggaaagataagatgagagtgtcatggataacggaaga |
159 |
Q |
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||||||| ||||| ||||| ||||||||| | |||||||| ||||||||||| ||||| |
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| T |
26275401 |
aggtgcacatttcgttggtagggaaagatcatatgagagtatcatggataactgaaga |
26275458 |
T |
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