View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_low_26 (Length: 259)
Name: NF5852_low_26
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4265624 - 4265383
Alignment:
| Q |
1 |
atgacccaaaagaggataaaagtaagaaagtgcaatggaaagtgattttttgagtttgcgaagaagtgtgttgtagaaaagtgaggtttggtgtggaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4265624 |
atgacccaaaagaggataaaagtaagaaagtgcaatggaaagtgattttttgagtttgggaagaagggtgttgtagaaaagtgaggtttggtgtggaaat |
4265525 |
T |
|
| Q |
101 |
tcatagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaag |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
4265524 |
tcatagaagaaaattctttgaactggtggtaatcttaaccataatatgtccaagaaagtaagaggaagtgatgtttctaaaggaagttcttcctgtgaag |
4265425 |
T |
|
| Q |
201 |
atggtgatacattgaaaatttctatgattttagacatttctt |
242 |
Q |
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| T |
4265424 |
atggtgatacattgaaaatttctatgattttagacatttctt |
4265383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4260078 - 4259847
Alignment:
| Q |
1 |
atgacccaaaagaggataaaagtaagaaagtgcaatggaaagtgattttttgagtttgcgaagaagtgtgttgtagaaaagtgaggtttggtgtggaaat |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||| |||||| |||||||||||||||||| |
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| T |
4260078 |
atgacccaaaagaggataaaagtgagaaagtgcaatggaaagtgattttttgagtttgggaagaagggttttgaagaaaaatgaggtttggtgtggaaac |
4259979 |
T |
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| Q |
101 |
tcatagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaag |
200 |
Q |
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| T |
4259978 |
tcatagaagaaaattctttgaacaggtggtaatcttaaccatagtatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgaag |
4259879 |
T |
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| Q |
201 |
atggtgatacattgaaaatttctatgatttta |
232 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
4259878 |
atggtgctacattgaaaatttctatgatttta |
4259847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 4290099 - 4290329
Alignment:
| Q |
1 |
atgacccaaaagaggataaaagtaagaaagtgcaatggaaagtgattttttgagtttgcgaagaagtgtgttgtagaaaagtgaggtttggtgtggaaat |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||| || ||||| |||| |||||||||| ||||||| || || |||||||||||||||||||||||||| |
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| T |
4290099 |
atgacccaaaagaggataaaagtgagaaagtgtaagagaaagagattgtttgagtttgggaagaagggtatttaagaaaagtgaggtttggtgtggaaat |
4290198 |
T |
|
| Q |
101 |
tcatagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | |
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| T |
4290199 |
tcatagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatg |
4290298 |
T |
|
| Q |
201 |
atggtgatacattgaaaatttctatgatttt |
231 |
Q |
| |
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|||||| |||||||||||||||||||||||| |
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| T |
4290299 |
atggtgctacattgaaaatttctatgatttt |
4290329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 37 - 231
Target Start/End: Original strand, 4293503 - 4293697
Alignment:
| Q |
37 |
ggaaagtgattttttgagtttgcgaagaagtgtgttgtagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatctt |
136 |
Q |
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|||||| |||| |||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4293503 |
ggaaagggattgtttgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggtggtaatctt |
4293602 |
T |
|
| Q |
137 |
aaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaagatggtgatacattgaaaatttctatgatttt |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||||||||||||| |
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| T |
4293603 |
aaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggtagttctacttgtgatgatggttctacattgaaaatttctatgatttt |
4293697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 4258385 - 4258573
Alignment:
| Q |
2 |
tgacccaaaagaggataaaagtaagaaagtgcaatggaaagtgattttttgagtttgcgaagaagtgtgttgtagaaaagtgaggtttggtgtggaaatt |
101 |
Q |
| |
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|||||||||||| | ||| ||| |||||||| || ||||| |||| ||||||||| ||||||| || ||| ||||||||||||||||||||||||||| |
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| T |
4258385 |
tgacccaaaagatg-taagagtgagaaagtgtaagagaaagggattgattgagtttgggaagaagggtattgaagaaaagtgaggtttggtgtggaaatt |
4258483 |
T |
|
| Q |
102 |
catagaagaaaattctttgaacaggtggtaatcttaaccataatatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttctt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4258484 |
catagaagaaaattctttgaacaggtggtaatcttaaccatagtatgtcaaagaaagtaagaggaagtgatgtttctgaaggaagttctt |
4258573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 4300175 - 4300306
Alignment:
| Q |
28 |
aagtgcaatggaaagtgattttttgagtttgcgaagaagtgtgttgtagaaaagtgaggtttggtgtggaaattcatagaagaaaattctttgaacaggt |
127 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||||| || ||||| | ||| |
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| T |
4300175 |
aagtgcaatggaaagtgattttttgagtttgggaagaagggtgttgaggaaaagtgtggtttggtgtggaaattcatagaagaaatttttttgacctggt |
4300274 |
T |
|
| Q |
128 |
ggtaatcttaaccataatatgtcaaagaaagt |
159 |
Q |
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|||||||||||||||| ||||||||||||||| |
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| T |
4300275 |
ggtaatcttaaccatagtatgtcaaagaaagt |
4300306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 4303509 - 4303595
Alignment:
| Q |
153 |
agaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaagatggtgatacattgaaaatttctatgattttagacattt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4303509 |
agaaagtaagaggaagtgatgtttctgaaggaagttcttcttgtgaagatggtgatacattgaaaatttctataattttagacattt |
4303595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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