View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_low_27 (Length: 255)
Name: NF5852_low_27
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_low_27 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 25065115 - 25065340
Alignment:
| Q |
17 |
aggttaggcttatttcccttgtgacggatattctgaagtggaagagaaagatctcaaactcacaaattacgttagataacataaagattgtaagcttcac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25065115 |
aggttaggcttatttcccttgtgacggatattctgaagtggaagagaaagatctcaaactcacaaattacgttagataacataaagattgtaagcttcac |
25065214 |
T |
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| Q |
117 |
ttagcttacatttaacttaattaaagccaaaataattaattaataatcgaccatatgtgattttcttaccaaatcagttaaccagctgctgattgatgat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25065215 |
ttagcttacatttaacttaattaaagccaaaataattaattaataatcgaccatatgtgattttcttaccaaatcagttaaccagctgctgattgatgat |
25065314 |
T |
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| Q |
217 |
actttcattgctgggttgttcatttc |
242 |
Q |
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|||||||||||||||||||| ||||| |
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| T |
25065315 |
actttcattgctgggttgttgatttc |
25065340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 25113767 - 25113994
Alignment:
| Q |
17 |
aggttaggcttatttcccttgtgacggatattctgaagtggaagagaaagatctcaaactcacaaattacgttagataacataaagattgtaagcttcac |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
25113767 |
aggttaggcttatttcccttgtgacggatattctaaagtggaagataaagatctcaaactcacaaattacgttacataa------gattataagcttcac |
25113860 |
T |
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| Q |
117 |
ttagcttaca----tttaacttaattaaagccaaaataattaattaataatcgaccatatg-tgattttcttaccaaatcagttaaccagctgctgat-- |
209 |
Q |
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| T |
25113861 |
ttagcttacatacatttaacttaattaatgacaaaataattaattaataatcgaccatatgttgattttcttaccaaatcagataaccagctgctgattg |
25113960 |
T |
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| Q |
210 |
-tgatgatactttcattgctgggttgttcatttc |
242 |
Q |
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| T |
25113961 |
atgatgatactttcatagctgagttgttgatttc |
25113994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 25238891 - 25238680
Alignment:
| Q |
17 |
aggttaggcttatttcccttgtgacggatattctgaagtggaagagaaagatctcaaactcacaaattacgttagataacataaagattgtaagcttcac |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||||||| |
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| T |
25238891 |
aggttaggcttatttcccttgtgacggatattctaaagtggaagataaagatctcaaactcacaa----------------------ttataagcttcac |
25238814 |
T |
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| Q |
117 |
ttagcttacat----ttaacttaattaaagccaaaataattaattaataatcgaccatatg-tgattttcttaccaaatcagttaaccagctgctgat-- |
209 |
Q |
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||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
25238813 |
ttagcttacatacatttaacttaattaatgacaaaataattaattaataatcgaccatatgttgattttcttaccaaatcagataaccagctgctgattg |
25238714 |
T |
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| Q |
210 |
-tgatgatactttcattgctgggttgttcatttc |
242 |
Q |
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|||||||||||||||||||| |||||| ||||| |
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| T |
25238713 |
atgatgatactttcattgctgagttgttgatttc |
25238680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 7358037 - 7358102
Alignment:
| Q |
17 |
aggttaggcttatttcccttgtgacggatattctgaagtggaagagaaagatctcaaactcacaaa |
82 |
Q |
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| T |
7358037 |
aggttagggttatttcccttgtgaaggatattttgaagtggaagagaaagatctcaaactcacaaa |
7358102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 17124545 - 17124477
Alignment:
| Q |
174 |
tgattttcttaccaaatcagttaaccagctgctgattgatgatactttcattgctgggttgttcatttc |
242 |
Q |
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|||||||||||||||||||| |||||||||| || |||||||||| ||||||| || |||||| ||||| |
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| T |
17124545 |
tgattttcttaccaaatcagataaccagctgttggttgatgatacgttcattgttgtgttgttgatttc |
17124477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 17114857 - 17114789
Alignment:
| Q |
174 |
tgattttcttaccaaatcagttaaccagctgctgattgatgatactttcattgctgggttgttcatttc |
242 |
Q |
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|||||||||||||||||||| |||||||| | || |||||||||| ||||||| || |||||| ||||| |
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| T |
17114857 |
tgattttcttaccaaatcagataaccagccgttggttgatgatacgttcattgttgtgttgttgatttc |
17114789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 220742 - 220676
Alignment:
| Q |
176 |
attttcttaccaaatcagttaaccagctgctgattgatgatactttcattgctgggttgttcatttc |
242 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||| ||||| |||| | |||| ||||| |
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| T |
220742 |
attttcttaccaaatcagataaccagctgctgcttgatgatacgttcatagctgtgctgttgatttc |
220676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 182863 - 182797
Alignment:
| Q |
176 |
attttcttaccaaatcagttaaccagctgctgattgatgatactttcattgctgggttgttcatttc |
242 |
Q |
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|||||||||||||||| | ||||||||||||| |||||||||| ||||| |||| | |||| ||||| |
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| T |
182863 |
attttcttaccaaatccgataaccagctgctgcttgatgatacgttcatagctgtgctgttgatttc |
182797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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