View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5852_low_3 (Length: 609)

Name: NF5852_low_3
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5852_low_3
NF5852_low_3
[»] chr2 (5 HSPs)
chr2 (265-589)||(40878533-40878857)
chr2 (115-164)||(13587407-13587456)
chr2 (115-164)||(13588099-13588148)
chr2 (127-164)||(32343005-32343042)
chr2 (117-154)||(35997684-35997721)
[»] chr6 (7 HSPs)
chr6 (92-164)||(173493-173565)
chr6 (102-164)||(15717444-15717506)
chr6 (102-164)||(17199391-17199453)
chr6 (102-163)||(17199287-17199348)
chr6 (102-164)||(17199600-17199662)
chr6 (104-154)||(30260259-30260309)
chr6 (115-153)||(31153933-31153971)
[»] chr3 (11 HSPs)
chr3 (92-164)||(31903345-31903417)
chr3 (102-164)||(36591110-36591172)
chr3 (92-164)||(33543338-33543410)
chr3 (116-160)||(11235498-11235542)
chr3 (102-164)||(33544262-33544324)
chr3 (102-160)||(36589998-36590056)
chr3 (102-164)||(35343363-35343425)
chr3 (115-154)||(21170744-21170783)
chr3 (102-149)||(30162292-30162339)
chr3 (117-154)||(47094708-47094745)
chr3 (117-154)||(53136492-53136529)
[»] chr7 (11 HSPs)
chr7 (92-164)||(25965535-25965607)
chr7 (102-164)||(25964493-25964555)
chr7 (102-164)||(33161765-33161827)
chr7 (92-164)||(34237819-34237885)
chr7 (102-164)||(34239255-34239317)
chr7 (115-164)||(26403782-26403831)
chr7 (115-153)||(43655455-43655493)
chr7 (115-154)||(28346593-28346632)
chr7 (115-154)||(40754837-40754876)
chr7 (124-164)||(26405751-26405791)
chr7 (115-151)||(40756970-40757006)
[»] chr8 (5 HSPs)
chr8 (102-164)||(13904207-13904269)
chr8 (102-164)||(13907242-13907304)
chr8 (102-164)||(11918694-11918756)
chr8 (115-154)||(7780202-7780241)
chr8 (115-154)||(7827168-7827207)
[»] chr5 (8 HSPs)
chr5 (92-146)||(7672328-7672382)
chr5 (102-164)||(11785495-11785557)
chr5 (115-154)||(41555192-41555231)
chr5 (102-164)||(1666070-1666135)
chr5 (115-154)||(5625456-5625495)
chr5 (115-154)||(20875076-20875115)
chr5 (115-154)||(25062297-25062336)
chr5 (115-154)||(27822780-27822819)
[»] chr4 (4 HSPs)
chr4 (102-164)||(35012006-35012068)
chr4 (103-160)||(13210593-13210650)
chr4 (116-154)||(45048747-45048785)
chr4 (117-154)||(43724449-43724486)
[»] chr1 (5 HSPs)
chr1 (102-164)||(34660652-34660714)
chr1 (102-164)||(34661731-34661793)
chr1 (117-154)||(48344318-48344355)
chr1 (117-154)||(48350690-48350727)
chr1 (552-580)||(40037816-40037844)
[»] scaffold0360 (2 HSPs)
scaffold0360 (115-154)||(7655-7694)
scaffold0360 (115-154)||(10681-10720)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-166; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 265 - 589
Target Start/End: Original strand, 40878533 - 40878857
Alignment:
Q  265 gcactaacactttataatgaagatgtgtctagagtacgacgccacagcaccaacacatatgattgcgacattcaataacttcatttctcaaattgttgtc 364  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  40878533 gcactaacactttataatgaagctgtgtctagagtacgacgccacagcaccaacacatgtgattgccacattcaattacttcatttctcaaattgttgtc 40878632  T
Q  365 ggtatagttgtgtatgtgtcggtgcttcacagttattgaattatctttcccaaacactaccaacaggaagaatgagttattcaatagcctctttgtatat 464  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40878633 ggtatagttgtgtatgtgtcggtgcttcccagttattgaattatctttcccaaacactacctacaggaagaatgagttattcaatagcctctttgtatat 40878732  T
Q  465 tcctctacatccatcctatgccttaactttgataaggaagttgcagaaatagttcaatagatttcaaattaaaacagtacctatcggaactattttagca 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878733 tcctctacatccatcctatgccttaactttgataaggaagttgcagaaatagttcaatagatttcaaattaaaacagtacctatcggaactattttagca 40878832  T
Q  565 aagcttaattattaaggaaatggac 589  Q
    |||||||||||||| ||||||||||    
T  40878833 aagcttaattattagggaaatggac 40878857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 13587456 - 13587407
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||||||||||||||||| ||||||||||||| | |||||||    
T  13587456 gaccggcggccagtcccgccgtttcagatggcgggaacgcgctaaaggac 13587407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 13588099 - 13588148
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    ||||||||||||||||| |||||||| ||||||||||||| | |||||||    
T  13588099 gaccggcggccagtcccaccgtttcagatggcgggaacgcgctaaaggac 13588148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 32343005 - 32343042
Alignment:
Q  127 gtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||||||||||||||||||| | |||||||    
T  32343005 gtcccgccgtttcaaatggcgggaacgcgctaaaggac 32343042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 35997721 - 35997684
Alignment:
Q  117 ccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  35997721 ccggcggccagtcccgccatttcagatggcgggaacgc 35997684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 173565 - 173493
Alignment:
Q  92 ctgtcagatcgtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  173565 ctgtcagatcgtgacacgtgtcggaccggcggccagtcccgccatttcaaacggcgggaacgcacaaaaggac 173493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 15717444 - 15717506
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15717444 gtgacacgtgtcagaccggcggctagtcccgccgtttcaaatggcgggaacgcacaaaaggac 15717506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 17199453 - 17199391
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17199453 gtgacacgtgtcagaccggcggctagtcccgccgtttcaaatggcgggaacgcacaaaaggac 17199391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 17199348 - 17199287
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaagga 163  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17199348 gtgacacgtgtcagaccggcggctagtcccgccgtttcaaatggcgggaacgcacaaaagga 17199287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 17199600 - 17199662
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||  |||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  17199600 gtgacacgtgtcagaccagcggccagtcccgccgtttcaaatggcaggaacgcacaaaaggac 17199662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 30260309 - 30260259
Alignment:
Q  104 gacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||||||||    
T  30260309 gacatgtgttagaccggcggccaatcccgccgtttcaaatggcgggaacgc 30260259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 31153971 - 31153933
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacg 153  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  31153971 gaccggcggccagttccgccgtttcaaatggcgggaacg 31153933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 31903345 - 31903417
Alignment:
Q  92 ctgtcagatcgtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  31903345 ctgtcagatcgtgacacgtgtcggaccggcggccagtcccgccatttcaaacggcgggaacgcacaaaaggac 31903417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 36591110 - 36591172
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36591110 gtgacacgtgtcagaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 36591172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 33543410 - 33543338
Alignment:
Q  92 ctgtcagatcgtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||| |||  ||||||||||||||||||||    
T  33543410 ctgtcagatcgtgacacgtgtcggaccggcggccagtcccgccatttaaaacagcgggaacgcacaaaaggac 33543338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 11235542 - 11235498
Alignment:
Q  116 accggcggccagtcccgccgtttcaaatggcgggaacgcacaaaa 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11235542 accggcggccagtcccgccgtttcaaatggcgggaacgcacaaaa 11235498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 33544262 - 33544324
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||  |||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  33544262 gtgacacgtgtcagaccggtggccagtcccgccatttcaaacggcgggaacgcacaaaaggac 33544324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 36590056 - 36589998
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaa 160  Q
    |||||||||||  ||||| |||| |||||||||||||||||||||||||||||||||||    
T  36590056 gtgacacgtgtcagaccgacggctagtcccgccgtttcaaatggcgggaacgcacaaaa 36589998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 35343425 - 35343363
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||| ||||  |||||||||||||||||| ||||||||||||||| ||||| | |||||||    
T  35343425 gtgacatgtgtcagaccggcggccagtcccgtcgtttcaaatggcggaaacgcgctaaaggac 35343363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 21170783 - 21170744
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  21170783 gaccggcggccagtcccgccatttcagatggcgggaacgc 21170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 30162339 - 30162292
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcggg 149  Q
    |||||||||||  ||  |||||||||||||||||||||||||||||||    
T  30162339 gtgacacgtgtcagattggcggccagtcccgccgtttcaaatggcggg 30162292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 47094745 - 47094708
Alignment:
Q  117 ccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  47094745 ccggcggccagtcccgccatttcagatggcgggaacgc 47094708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 53136529 - 53136492
Alignment:
Q  117 ccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  53136529 ccggcggccagtcccgccatttcagatggcgggaacgc 53136492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 25965535 - 25965607
Alignment:
Q  92 ctgtcagatcgtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||| |||||||||||||| | |||| || |||||||||||||||||||||||||||||||||||||||||    
T  25965535 ctgtcacatcgtgacacgtgtcgaaccgtcgaccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 25965607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 25964555 - 25964493
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||  |||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  25964555 gtgacacgtgtcagaccggcggccagtcccgccatttcaaacggcgggaacgcacaaaaggac 25964493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 33161765 - 33161827
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||  |||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  33161765 gtgacacgtgtcagaccggcggccagtcccgccatttcaaacggcgggaacgcacaaaaggac 33161827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 34237885 - 34237819
Alignment:
Q  92 ctgtcagatcgtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    ||||||||||||||||||||| ||||||||||||      |||||||||||||||||||||||||||||||||    
T  34237885 ctgtcagatcgtgacacgtgtcggaccggcggcc------gccgtttcaaatggcgggaacgcacaaaaggac 34237819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 34239255 - 34239317
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||   ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  34239255 gtgacacgtgtcaaaccggcggccagtcccgccatttcaaacggcgggaacgcacaaaaggac 34239317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 26403831 - 26403782
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  26403831 gaccggcggccagtcctgccgtttcagatggcgggaacgcacaaaaggac 26403782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 43655455 - 43655493
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacg 153  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  43655455 gaccggcggccagtcccgccgtttcagatggcgggaacg 43655493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 28346632 - 28346593
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  28346632 gaccggcggccagtcccgccatttcagatggcgggaacgc 28346593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 40754876 - 40754837
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  40754876 gaccggcggccagtcccgccatttcagatggcgggaacgc 40754837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 26405751 - 26405791
Alignment:
Q  124 ccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||| |||||||| ||| |||||||||||||||||||    
T  26405751 ccagtccccccgtttcagatgacgggaacgcacaaaaggac 26405791  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 40756970 - 40757006
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaa 151  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  40756970 gaccggcggccagtcccgccatttcagatggcgggaa 40757006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 13904269 - 13904207
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13904269 gtgacacgtgtcagaccggcggccagttccgccgtttcaaatggcgggaacgcacaaaaggac 13904207  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 13907242 - 13907304
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||  |||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  13907242 gtgacacgtgtcagaccggcggccagtcccgccctttcaaagggcgggaacgcacaaaaggac 13907304  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 11918756 - 11918694
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||| ||||  ||||||||| |||||||||||||||||||||||||||||| | |||||||    
T  11918756 gtgacatgtgtcagaccggcggtcagtcccgccgtttcaaatggcgggaacgcgctaaaggac 11918694  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 7780241 - 7780202
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  7780241 gaccggcggccagtcccgccatttcagatggcgggaacgc 7780202  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 7827207 - 7827168
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  7827207 gaccggcggccagtcccgccatttcagatggcgggaacgc 7827168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 7672328 - 7672382
Alignment:
Q  92 ctgtcagatcgtgacacgtgttggaccggcggccagtcccgccgtttcaaatggc 146  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  7672328 ctgtcagatcgtgacacgtgtcggaccggcggccagtcctgccgtttcaaatggc 7672382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 11785495 - 11785557
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||  |||||||||||| ||||||| ||||||| |||||||||||| ||||||||    
T  11785495 gtgacacgtgtcagaccggcggccaatcccgccatttcaaacggcgggaacgcagaaaaggac 11785557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 41555231 - 41555192
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  41555231 gaccggcggccagtcccgccgtttcagatggcgggaacgc 41555192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 1666135 - 1666070
Alignment:
Q  102 gtgacacgtgttggaccggcggcca---gtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    ||||||||||| |||||||||||||   ||||| | |||| ||| |||||||||||||||||||||    
T  1666135 gtgacacgtgtcggaccggcggccaccagtccctcagtttgaaacggcgggaacgcacaaaaggac 1666070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 5625495 - 5625456
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  5625495 gaccggcggccagtcccgccatttcagatggcgggaacgc 5625456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 20875115 - 20875076
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  20875115 gaccggcggccagtcccgccatttcagatggcgggaacgc 20875076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 25062297 - 25062336
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  25062297 gaccggcggccagtcccgccatttcagatggcgggaacgc 25062336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 27822780 - 27822819
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  27822780 gaccggcggccagtcccgccatttcagatggcgggaacgc 27822819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 35012068 - 35012006
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||||||||  |||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  35012068 gtgacacgtgtccgaccggcggccagtcccgccatttcaaacggcgggaacgcacaaaaggac 35012006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 13210593 - 13210650
Alignment:
Q  103 tgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaa 160  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||    
T  13210593 tgacacgtgtcagaccggcggtcagtcccgccgtttcaaatggcgggaacgcacaaaa 13210650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 45048747 - 45048785
Alignment:
Q  116 accggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  45048747 accggcggccagtcccgccatttcagatggcgggaacgc 45048785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 43724486 - 43724449
Alignment:
Q  117 ccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  43724486 ccggcggccagtcccgccatttcagatggcgggaacgc 43724449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 34660714 - 34660652
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  34660714 gtgacatgtgtcagaccggcggccagtcccgccgtttcaaatggcgggaacgcgctaaaggac 34660652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 34661731 - 34661793
Alignment:
Q  102 gtgacacgtgttggaccggcggccagtcccgccgtttcaaatggcgggaacgcacaaaaggac 164  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  34661731 gtgacatgtgtcagaccggcggccagtcccgccgtttcaaatggcgggaacgcgctaaaggac 34661793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 48344355 - 48344318
Alignment:
Q  117 ccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  48344355 ccggcggccagtcccgccgtttcaggtggcgggaacgc 48344318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 48350690 - 48350727
Alignment:
Q  117 ccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  48350690 ccggcggccagtcccgccgtttcaggtggcgggaacgc 48350727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 580
Target Start/End: Complemental strand, 40037844 - 40037816
Alignment:
Q  552 aactattttagcaaagcttaattattaag 580  Q
    |||||||||||||||||||||||||||||    
T  40037844 aactattttagcaaagcttaattattaag 40037816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 7694 - 7655
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  7694 gaccggcggccagtcccgccatttcagatggcgggaacgc 7655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 10681 - 10720
Alignment:
Q  115 gaccggcggccagtcccgccgtttcaaatggcgggaacgc 154  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  10681 gaccggcggccagtcccgccatttcagatggcgggaacgc 10720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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