View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_low_35 (Length: 231)
Name: NF5852_low_35
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8954982 - 8955204
Alignment:
| Q |
1 |
cgcccgtgctcaacgtatgactcaagcgtccataacatcaattaataacaaattttattcaattactttcatatgaatacatgcatatnnnnnnntagaa |
100 |
Q |
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| T |
8954982 |
cgcccgtgctcaacgtacgactcaaacgtccataacatcaattaataacaaattttattcaattactttcataggaatacatgcatataaaaaaatagaa |
8955081 |
T |
|
| Q |
101 |
tctctcaatcagggatttttgaatgaaatcattacaagggtagaatactcctacaatgatgagatcataaagggaatacggaatcctcatttttacgagt |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |||| |
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| T |
8955082 |
tctctcaatcaaggatttttgaatgaaatcattacaagggtagaatactcctacaatgataagatcatgaagggaatatggaatcctcatttttatgagt |
8955181 |
T |
|
| Q |
201 |
aatcttttatttatacctatgct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
8955182 |
aatcttttatttatacctatgct |
8955204 |
T |
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