View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5852_low_39 (Length: 214)

Name: NF5852_low_39
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5852_low_39
NF5852_low_39
[»] chr4 (19 HSPs)
chr4 (43-214)||(52741335-52741506)
chr4 (43-214)||(42777710-42777881)
chr4 (43-214)||(18107053-18107225)
chr4 (43-214)||(30274309-30274482)
chr4 (43-214)||(449522-449694)
chr4 (43-214)||(34322816-34322988)
chr4 (43-214)||(53487450-53487622)
chr4 (43-214)||(42822915-42823087)
chr4 (43-186)||(19164457-19164601)
chr4 (43-213)||(31863737-31863908)
chr4 (43-213)||(34005365-34005536)
chr4 (43-214)||(12881182-12881355)
chr4 (43-214)||(55854278-55854437)
chr4 (43-214)||(1844754-1844928)
chr4 (43-214)||(29213477-29213651)
chr4 (43-214)||(10563806-10563978)
chr4 (43-214)||(53779514-53779688)
chr4 (70-214)||(20395096-20395239)
chr4 (144-214)||(18935241-18935311)
[»] chr1 (14 HSPs)
chr1 (43-214)||(40292582-40292753)
chr1 (43-214)||(17707467-17707639)
chr1 (43-214)||(9903762-9903934)
chr1 (43-214)||(10722510-10722680)
chr1 (43-214)||(30111421-30111593)
chr1 (43-213)||(25591972-25592143)
chr1 (43-214)||(10711610-10711773)
chr1 (43-214)||(49968797-49968970)
chr1 (43-110)||(1395036-1395103)
chr1 (43-214)||(41061641-41061814)
chr1 (43-119)||(47107257-47107334)
chr1 (43-115)||(47586791-47586865)
chr1 (43-116)||(12173676-12173750)
chr1 (43-114)||(21335822-21335894)
[»] chr7 (10 HSPs)
chr7 (43-214)||(34231170-34231342)
chr7 (43-214)||(29114046-29114218)
chr7 (43-214)||(18654329-18654503)
chr7 (44-168)||(24752890-24753015)
chr7 (43-146)||(20037566-20037670)
chr7 (43-214)||(4076744-4076918)
chr7 (43-146)||(20047697-20047801)
chr7 (43-214)||(7459168-7459340)
chr7 (43-107)||(23397267-23397331)
chr7 (43-115)||(10282419-10282492)
[»] chr2 (8 HSPs)
chr2 (43-214)||(3000245-3000417)
chr2 (43-207)||(7075583-7075748)
chr2 (43-214)||(1379570-1379725)
chr2 (43-189)||(9393007-9393155)
chr2 (43-115)||(22295927-22296000)
chr2 (43-115)||(18704391-18704464)
chr2 (50-214)||(24313920-24314086)
chr2 (61-110)||(36272886-36272935)
[»] chr5 (8 HSPs)
chr5 (43-214)||(4416197-4416369)
chr5 (43-214)||(4922705-4922877)
chr5 (43-214)||(34874936-34875107)
chr5 (43-109)||(27895376-27895442)
chr5 (43-119)||(6048707-6048784)
chr5 (43-214)||(20209216-20209389)
chr5 (43-185)||(8891966-8892107)
chr5 (43-106)||(40089807-40089872)
[»] chr6 (7 HSPs)
chr6 (65-214)||(9199749-9199898)
chr6 (43-214)||(17079688-17079860)
chr6 (43-146)||(6831497-6831600)
chr6 (43-193)||(17874319-17874471)
chr6 (43-214)||(33722519-33722696)
chr6 (47-119)||(11061447-11061520)
chr6 (43-115)||(26526001-26526073)
[»] chr3 (17 HSPs)
chr3 (43-214)||(33121814-33121986)
chr3 (43-214)||(11639437-11639609)
chr3 (50-214)||(36634916-36635081)
chr3 (43-213)||(8695389-8695560)
chr3 (43-213)||(9047276-9047447)
chr3 (43-116)||(1764603-1764676)
chr3 (43-214)||(25341831-25342004)
chr3 (43-214)||(47536740-47536911)
chr3 (43-214)||(32093411-32093582)
chr3 (43-119)||(32233672-32233749)
chr3 (43-214)||(19221599-19221770)
chr3 (43-214)||(26845341-26845514)
chr3 (43-115)||(49500930-49501003)
chr3 (43-115)||(43122275-43122348)
chr3 (46-99)||(50543693-50543747)
chr3 (43-115)||(46664948-46665021)
chr3 (43-71)||(54559076-54559104)
[»] chr8 (11 HSPs)
chr8 (43-195)||(10583932-10584084)
chr8 (43-178)||(8446703-8446839)
chr8 (61-214)||(45256325-45256476)
chr8 (43-214)||(29470695-29470866)
chr8 (43-146)||(31082173-31082277)
chr8 (43-115)||(17658303-17658376)
chr8 (46-110)||(26030965-26031029)
chr8 (43-115)||(10267576-10267649)
chr8 (94-214)||(23679687-23679806)
chr8 (73-110)||(11155017-11155054)
chr8 (43-110)||(36156625-36156693)
[»] scaffold0007 (1 HSPs)
scaffold0007 (43-213)||(181600-181771)
[»] scaffold0308 (1 HSPs)
scaffold0308 (43-214)||(11550-11721)
[»] scaffold0481 (1 HSPs)
scaffold0481 (43-146)||(1344-1447)
[»] scaffold0227 (1 HSPs)
scaffold0227 (43-115)||(8385-8457)
[»] scaffold0765 (1 HSPs)
scaffold0765 (43-115)||(1383-1455)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 9e-66; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 52741506 - 52741335
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||||||||||    
T  52741506 aacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctataaataaagagtcatacaaacaac 52741407  T
Q  143 caaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  52741406 caaacaaaccattaagtgatgcccaaacattgtaagagacttgagcaccacatctcagaaccaaacctaaaa 52741335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 42777710 - 42777881
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||| ||    
T  42777710 aacaaacaaaaatggaattataataatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctacaaataaagagtcatacaaaccac 42777809  T
Q  143 caaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  42777810 caaacaaaccattacgtgatgcccaaacattgtaagggacttgagcaccacatctcagaaccaaacctaaaa 42777881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 18107225 - 18107053
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||       ||||||||||||||||    
T  18107225 aacaataaaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgccaaaagaactactctacaaatttagagtcatacaaacaac 18107126  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| ||||||||||| ||||||||| ||||||| |||||||| || |||||||||||||||    
T  18107125 caaaacaaaccattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaaa 18107053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 30274482 - 30274309
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctac-nnnnnnngagtcatacaaacaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |||||||||        |||||||||||||||    
T  30274482 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcataagatgtgccaaaagagctactctacaaaacttagagtcatacaaacaa 30274383  T
Q  142 cc-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    || ||||||| ||||| ||||||||||| ||||||||| ||||||| |||||||| || |||||||||||||||    
T  30274382 ccaaaacaaaccattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaaa 30274309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 449522 - 449694
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||| ||||||||||||||||||||||| |||||||||||||| | || ||| |||||||||||| |||||||||       ||||||||||||||||    
T  449522 aacaataaaaaatggaattatattaatcacgaaaagcaactcttccagcataagatgtgccaaaagagctactctacaaacttagagtcatacaaacaac 449621  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| ||||||||||| ||||||||| ||||||| |||||||| || |||||||||||||||    
T  449622 caaaacaaaccattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaaa 449694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 34322988 - 34322816
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||       |||||||| |||||||    
T  34322988 aacaataaaaaatggaattatataaatcaccaaaaacaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatataaacaac 34322889  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| ||||||||||| ||||||||| |||||||  ||||||| || |||||||||||||||    
T  34322888 caaaacaaaccattacgtgatgcccaagcattgtaagggacttgaataccacatatctgaaccaaacctaaaa 34322816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 53487622 - 53487450
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||| | |||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||| ||||||||       ||||||||||||||||    
T  53487622 aacaataagaaatggaattatataaatcacaaaaagcaactcttctagcacaagatgtgccaaaagaattactctacaaacatagagtcatacaaacaac 53487523  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| |||||||||||| |||||||| ||||||| |||||||| || |||||||||||||||    
T  53487522 caaaacaaaccattacgtgatgcccaaatattgtaagggacttgaacaccacatatctgaaccaaacctaaaa 53487450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 42822915 - 42823087
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaa-caa 141  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||       |||||||||||| ||     
T  42822915 aacaatcaaaaatggaattatataaatcaccaaaagcaactcttctagcacaaagtgtgccaaaagagctactctacaaacttagagtcatacaaaccat 42823014  T
Q  142 ccaaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| ||||||||||| ||||||||| || |||| ||| |||| || |||||||||||||||    
T  42823015 caaaacaaaccattacgtgatgcccaagcattgtaagggatttgaacactacatatctgaaccaaacctaaaa 42823087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 19164457 - 19164601
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||    
T  19164457 aacaatcaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctacaaacatagagtcatacaaacaac 19164556  T
Q  143 caaa-caaaacattatgtgatgcccaaacattgtaagagacttga 186  Q
    |||| |||| |||||   ||| ||||||||| ||||| |||||||    
T  19164557 caaagcaaaccattacacgatacccaaacatcgtaagggacttga 19164601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 43 - 213
Target Start/End: Original strand, 31863737 - 31863908
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||       |||| |||||| ||||    
T  31863737 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaac 31863836  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaa 213  Q
    | ||||||| ||||| | ||||||||| ||||||||| ||||||| |||||  | || ||||||||| ||||    
T  31863837 caaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccaactatctgaaccaaacttaaa 31863908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 213
Target Start/End: Original strand, 34005365 - 34005536
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||  | ||||||||||| |||||||||| |||       |||| |||||| ||||    
T  34005365 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtataaggtgtgccataagaactactttacaaatacagagttatacaaccaac 34005464  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaa 213  Q
    | ||||||| ||||| | ||||| ||| ||||||||| ||||||| |||||| | || ||||||||||||||    
T  34005465 caaaacaaaccattacgcgatgctcaagcattgtaagggacttgaacaccacttatctgaaccaaacctaaa 34005536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 12881355 - 12881182
Alignment:
Q  43 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||| |||| |||||||||| |||||||| |||||||||       |||||||||||||||    
T  12881355 aacaatcaacaatggaatttatattaaccaccaaaagcaactcctctagcacaaggtgtaccaaaagagctactctacaaacacagagtcatacaaacaa 12881256  T
Q  142 cca-aacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
     || || ||| ||||| | ||||||||| ||||| ||| ||||||| |||||| | || |||||||||||||||    
T  12881255 acataaaaaaccattacgcgatgcccaagcattggaagggacttgagcaccacctatctgaaccaaacctaaaa 12881182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 55854278 - 55854437
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||||||||||||||||||||||||||  ||||||||||             |||||||||||||||||||||||       ||||||||||||||||    
T  55854278 aacaatcaaaaatggaattatattaatcattaaaagcaact-------------gtgtgccaaaagaactactctacaaatatagagtcatacaaacaac 55854364  T
Q  143 caaa-caaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    |||| |||| ||||| ||||||| ||| ||||||||| ||||||| |||||||| || |||||||||||||||    
T  55854365 caaaacaaaccattacgtgatgctcaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaaa 55854437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 1844928 - 1844754
Alignment:
Q  43 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||| |||||||||||| ||||||| || ||||| |||||| |||| ||||||||||||||||||| |||||||||       |||||||||||||||    
T  1844928 aacaataaaaaatggaatttatattaaccatcaaaaacaactcctctagcacaaggtgtgccaaaagagctactctacaaacacagagtcatacaaacaa 1844829  T
Q  142 cc--aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
     |  ||| ||| ||||| | ||||  ||||||||| ||| ||||||| |||||| | || |||||||||||||||    
T  1844828 acataaaaaaaccattacgcgatgttcaaacattggaagggacttgagcaccacctatctgaaccaaacctaaaa 1844754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 29213651 - 29213477
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaat-caccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaaca 140  Q
    |||||||||||||||||| ||||||||  |||||||||||||||| |||  | |||||||||||||| || |||| |||       ||||||||||||||    
T  29213651 aacaatcaaaaatggaatatatattaaaacaccaaaagcaactctcctagtataaggtgtgccaaaataattactttacaagaagagagtcatacaaaca 29213552  T
Q  141 acc-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    ||| ||||||| ||||| |  |||| ||| ||||| ||| ||||||| |||||| | || | |||||||||||||    
T  29213551 accaaaacaaaccattaagcaatgctcaagcattggaagggacttgagcaccacctatctgtaccaaacctaaaa 29213477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 10563978 - 10563806
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||||||||||||||| |||||||| |||||||||||||||  ||| || ||||||||||| ||||| |||| |||       |||||||||||||||    
T  10563978 aacaatcaaaaatggaatatatattaaacaccaaaagcaactcccctagcataaggtgtgccagaagaattact-tacaagaacagagtcatacaaacaa 10563880  T
Q  142 cc-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    || ||||||| ||||| |  ||||||||  |||| ||| ||||||| |||||  | || | |||||||||||||    
T  10563879 ccaaaacaaaccattaagcaatgcccaagtattggaagggacttgagcaccaactatctgtaccaaacctaaaa 10563806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 53779514 - 53779688
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaat-caccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaaca 140  Q
    |||||| ||||||| ||| ||||||||  |||||||||||||||| ||| |||||||||||||||||||| |||| |||        |||||||||||||    
T  53779514 aacaataaaaaatgaaatatatattaaaacaccaaaagcaactctcctagcacaaggtgtgccaaaagaattactttacaagaacatagtcatacaaaca 53779613  T
Q  141 acc-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    ||| ||||||| ||||| |  |||||||| ||||| | | ||||| | |||||| | || | |||||||||||||    
T  53779614 accaaaacaaaccattaagcaatgcccaagcattggatgggactttagcaccacctatctgtaccaaacctaaaa 53779688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 214
Target Start/End: Original strand, 20395096 - 20395239
Alignment:
Q  70 caccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaaccaaacaaaacattatgtgatgcccaaa 169  Q
    ||||||||||| ||| | ||  |||||||||| ||||||| |||||||||       ||||||||||||||| |||| ||| ||| | | |||| ||||     
T  20395096 caccaaaagcagctcctgtagtacaaggtgtgtcaaaagagctactctacaaacacagagtcatacaaacaaacaaa-aaaccatcacgcgatgtccaag 20395194  T
Q  170 cattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    ||||| ||| ||||||| |||||| | || |||||||||||||||    
T  20395195 cattggaagggacttgagcaccacctatctgaaccaaacctaaaa 20395239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 18935241 - 18935311
Alignment:
Q  144 aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    ||||||| ||||| ||||||||||||||||| ||| ||||||| |||||  | || | |||||||||||||    
T  18935241 aaacaaaccattaagtgatgcccaaacattgaaagggacttgaacaccaactatctgtaccaaacctaaaa 18935311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 40292753 - 40292582
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||| |||||||||    
T  40292753 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctacaaataaagagtcaaacaaacaac 40292654  T
Q  143 caaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    |||||||| ||||| |||||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  40292653 caaacaaaccattacgtgatgcccaaacattgtaaggaacttgagcaccacatctcagaaccaaacctaaaa 40292582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 17707467 - 17707639
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||| |||||||||||| |||||| |||||||||       ||||||||||||||||    
T  17707467 aacaatcaaaaaagaaattatattaatcaccacaagcaactcttctagcacaaggtgtgctaaaagagctactctacaaacttagagtcatacaaacaac 17707566  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| ||||||||||| ||||||||||||||||| || ||||| || |||||||||||||||    
T  17707567 caaaacaaaccattacgtgatgcccaagcattgtaagagacttgaacaacacatatctgaaccaaacctaaaa 17707639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 9903934 - 9903762
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||||| ||||||||||||||||       ||||||||||||||||    
T  9903934 aacaatcaaaaatggaattatgttaaccaccaaaagcaactcttctagtacaaggtgtgctaaaagaactactctacaaacacagagtcatacaaacaac 9903835  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| | |||||||||  |||||||| ||||||| |||||| | || |||||||||||||||    
T  9903834 caaaacaaaccattacgcgatgcccaagtattgtaagggacttgagcaccacttatctgaaccaaacctaaaa 9903762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 10722510 - 10722680
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||        |||||||||||||||    
T  10722510 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactttacaaatac--agtcatacaaacaac 10722607  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| | ||||||||| ||||||||| ||||||| |||||| | || ||||||||| |||||    
T  10722608 caaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccacctatctgaaccaaacttaaaa 10722680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 30111593 - 30111421
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||       ||||||||||||||||    
T  30111593 aacaatcaaaaatggaattatattaatcatcaaaaacaactcttctagcacaaggtgtgccaaaagaactactttacaaccatagagtcatacaaacaac 30111494  T
Q  143 caaa-caaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
     ||| |||| |||||   ||| ||||||||||||||| || |||| |||||||| ||  ||||||||||||||    
T  30111493 taaagcaaaccattacacgatacccaaacattgtaagggatttgaacaccacatatctaaaccaaacctaaaa 30111421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 25592143 - 25591972
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||       |||| |||||| ||||    
T  25592143 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaac 25592044  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaa 213  Q
    | |||||||  || | | ||||||||||||||||||| ||||||| |||||| | || ||||||||||||||    
T  25592043 caaaacaaactatcacgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 25591972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 10711773 - 10711610
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||       ||||||||            
T  10711773 aacaatcaaaaatgaaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactttacaaatacagagtcata-------- 10711682  T
Q  143 caaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    |||||||| ||||| | ||| ||||| ||||||||| ||||||| |||||| | || |||||||||||||||    
T  10711681 caaacaaaccattacgcgatacccaagcattgtaagggacttgaacaccacctatctgaaccaaacctaaaa 10711610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 49968797 - 49968970
Alignment:
Q  43 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    ||||||||||||||||||| ||||||| ||||||||||||||  |||| |||||||||||| |||||| ||||| |||       |||||||||||||||    
T  49968797 aacaatcaaaaatggaatttatattaaccaccaaaagcaacttctctagcacaaggtgtgctaaaagagctactttacaaacacagagtcatacaaacaa 49968896  T
Q  142 cca-aacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    ||| || ||| ||||| | ||||||||| ||||| ||| ||||||| |||||| | || |||||||||||||||    
T  49968897 ccataagaaaccattacgcgatgcccaagcattggaagggacttgagcaccacctatctgaaccaaacctaaaa 49968970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 1395103 - 1395036
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaa 110  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  1395103 aacaatcaaaaatggaattatattaaccaccaaaaacaactcttctagcacaaggtgtgccaaaagaa 1395036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 41061814 - 41061641
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtc-atacaaaca 140  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||        |||| | |||||||    
T  41061814 aacaatcaaaaatggaatatatattaa-caccaaaagcaactcttctagcacaaggtgtgctaaaagaattactctacaaaaacatagtcaaaacaaaca 41061716  T
Q  141 accaa-acaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    ||||| ||||| ||||| | ||||||||| ||||| ||  ||||||| |||||| | || | |||||||||||||    
T  41061715 accaatacaaaccattaagcgatgcccaagcattggaaaggacttgagcaccacctatctgtaccaaacctaaaa 41061641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 47107334 - 47107257
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctac 119  Q
    |||||||||||||| ||| ||||||||  |||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  47107334 aacaatcaaaaatgaaatatatattaactaccaaaagcaactcctctagtacaaggtgtgccaaaagaactactctac 47107257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 47586791 - 47586865
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaa-ctcttctaacacaaggtgtgccaaaagaactact 115  Q
    ||||| |||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||| ||| ||||    
T  47586791 aacaaacaaaaatggaatatatattaaccaccaaaagcaaactcctctaacacaaggtgtgccaaatgaattact 47586865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 12173676 - 12173750
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactc 116  Q
    ||||| |||||||||||| |||||||| ||| |||| |||||| |||| |||||| ||||||||||||| |||||    
T  12173676 aacaaacaaaaatggaatatatattaaccacaaaaaacaactcctctagcacaagatgtgccaaaagaattactc 12173750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 21335894 - 21335822
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactac 114  Q
    ||||| |||||||||||| |||||||| ||| |||| ||| || ||||| ||||| |||||||||||||||||    
T  21335894 aacaagcaaaaatggaatatatattaaccacaaaaaacaattcctctaagacaagatgtgccaaaagaactac 21335822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 34231170 - 34231342
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||       ||||||||||||||||    
T  34231170 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgccaaaagagctactctacaaatttagagtcatacaaacaac 34231269  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||||||||||||||| ||||||||| ||||||| |||||||| || |||||||||||||||    
T  34231270 caaaacaaaccattatgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaaa 34231342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 29114218 - 29114046
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||        ||||||||||||||||    
T  29114218 aacaatcaaaaatggaattatattaatcaccaaaagcaactattctagcacaaggtgtgccaaaagagctactctaaaaatttagagtcatacaaacaac 29114119  T
Q  143 ca-aacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    || |||||| ||||| ||||||||||| ||||||||| ||||||| |||||||| || |||||||| ||||||    
T  29114118 cataacaaatcattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaaactaaaa 29114046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 18654503 - 18654329
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||| ||||||||||| || ||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |||       |||||||||||||||    
T  18654503 aacaataaaaaatggaatataaattaaccaccaaaagcaactcctctagcacaaggtgtgccaaaagaactactttacaaacacagagtcatacaaacaa 18654404  T
Q  142 ccaaa--caaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    |||||  |||| ||||| | |||||| |||||||| ||| ||||||| |||||||| |  | |||||||||||||    
T  18654403 ccaaaaccaaaccattaagcgatgcctaaacattgaaagggacttgagcaccacatatatgtaccaaacctaaaa 18654329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 24752890 - 24753015
Alignment:
Q  44 acaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa-c 142  Q
    |||||||||||| |||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||| |||       ||||||||||||||| |    
T  24752890 acaatcaaaaatagaattatattaaccaccaaaagcagctcttgtagcacaaggtgtgccaaaagaactactttacaaatacagagtcatacaaacaatc 24752989  T
Q  143 caaacaaaacattatgtgatgcccaa 168  Q
     ||||||| ||||| | |||||||||    
T  24752990 aaaacaaaccattacgcgatgcccaa 24753015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 20037670 - 20037566
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||||||||||||||| |||||||| ||||||||||||||| |||| || |||||||||||||||||||||| |||       |||||||||||||||    
T  20037670 aacaatcaaaaatggaatatatattaaccaccaaaagcaactcctctagcataaggtgtgccaaaagaactactttacaaacatagagtcatacaaacaa 20037571  T
Q  142 ccaaa 146  Q
    |||||    
T  20037570 ccaaa 20037566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 4076744 - 4076918
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaa-ctcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaaca 140  Q
    |||||| ||||||||||| |||| |||||||||||||||| ||| |||| |||||||||||||||||||| |||| ||        |||||| |||| ||    
T  4076744 aacaataaaaaatggaatatataataatcaccaaaagcaaactcctctagcacaaggtgtgccaaaagaattactttaaaaacaaagagtcagacaagca 4076843  T
Q  141 acc-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
     || ||||||| ||||| ||||||||||||||||| ||| ||||||| |||||| | || | |||||||||||||    
T  4076844 tccaaaacaaaccattaagtgatgcccaaacattgaaagggacttgaacaccacttatctgtaccaaacctaaaa 4076918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 20047801 - 20047697
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||| ||||||||||| |||||||| ||||||||||||||| ||||  |||||||||||||||||||||| | |||       |||||||||||||||    
T  20047801 aacaataaaaaatggaatatatattaaccaccaaaagcaactcctctagtacaaggtgtgccaaaagaactattttacaaacatagagtcatacaaacaa 20047702  T
Q  142 ccaaa 146  Q
    |||||    
T  20047701 ccaaa 20047697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 7459340 - 7459168
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    ||||| |||||||||||| |||||||| |||||||||||||||  ||| |||||||||||||||||||| |||| |||       ||| |||||||||||    
T  7459340 aacaaacaaaaatggaatatatattaaacaccaaaagcaactcccctagcacaaggtgtgccaaaagaattact-tacaagaacagagccatacaaacaa 7459242  T
Q  142 cc-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    || ||||||| ||||| |  |||||||| || || ||| || |||| |||||| | || | |||||||||||||    
T  7459241 ccaaaacaaaccattaagcaatgcccaagcaatggaagggaattgagcaccacctatctgtaccaaacctaaaa 7459168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 23397331 - 23397267
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaa 107  Q
    |||||||||||||||||| |||||||| ||||||||| ||||| |||| |||||||||||| ||||    
T  23397331 aacaatcaaaaatggaatatatattaa-caccaaaagaaactcctctagcacaaggtgtgctaaaa 23397267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 10282492 - 10282419
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactact 115  Q
    ||||| |||||||||||| |||||||| ||| |||| |||||| |||| |||||  ||||||||||||| ||||    
T  10282492 aacaagcaaaaatggaatatatattaaccacaaaaaacaactcctctagcacaaaatgtgccaaaagaattact 10282419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 3000417 - 3000245
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||       ||||||||||||||||    
T  3000417 aacaataaaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgccaaaagaactactctacaaatttagagtcatacaaacaac 3000318  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| ||||||||||| ||||||||| ||||||| |||||||| || |||||||||||||||    
T  3000317 caaaacaaaccattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaaa 3000245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 43 - 207
Target Start/End: Original strand, 7075583 - 7075748
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||       ||||||||||||||||    
T  7075583 aacaataaaaaatggaattatattaatcatcaaaagcaactcttctagcacaaggtgtgccaaaagagctactcaacaaaattagagtcatacaaacaac 7075682  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaa 207  Q
    | ||||||| ||||| ||||||||||| |||| |||| || |||| |||||||| || ||||||||    
T  7075683 caaaacaaaccattacgtgatgcccaagcattataagggatttgaacaccacatatctgaaccaaa 7075748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 1379570 - 1379725
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||       |||||| |||||||||    
T  1379570 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttc----------------aaaagaactactctacaaataaagagtcaaacaaacaac 1379653  T
Q  143 caaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  1379654 caaacaaaccattacgtgatgcccaaacattgtaagggacttgagcaccacatctcagaatcaaacctaaaa 1379725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 9393007 - 9393155
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||| ||||||| ||| |||||||| ||||||||||||||| |||| |||||||||||||||||||| |||| |||       |||||||||||||||    
T  9393007 aacaataaaaaatgaaatatatattaaccaccaaaagcaactcctctagcacaaggtgtgccaaaagaaatactttacaaacatagagtcatacaaacaa 9393106  T
Q  142 cc-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatca 189  Q
    || ||||||| ||||| |  |||||||||||||| ||||||||| ||||    
T  9393107 ccaaaacaaaccattaagcaatgcccaaacattgaaagagactttatca 9393155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 22296000 - 22295927
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactact 115  Q
    |||||||||||||| ||| |||||||| ||  |||||||| || ||||||||||||||||||||||||||||||    
T  22296000 aacaatcaaaaatgaaatatatattaaccattaaaagcaattcctctaacacaaggtgtgccaaaagaactact 22295927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 18704464 - 18704391
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactact 115  Q
    |||||| ||||||||||| |||||||| || |||||||||||| |||| |||||| ||||||||||||| ||||    
T  18704464 aacaataaaaaatggaatatatattaaccatcaaaagcaactcgtctagcacaagatgtgccaaaagaattact 18704391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 24314086 - 24313920
Alignment:
Q  50 aaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtc-atacaaacaaccaa-a 146  Q
    ||||||||||| |||||||| ||||||||||||||| |||| |||||||||||| ||| ||| |||| |||       ||||| | |||||||||||| |    
T  24314086 aaaaatggaatatatattaa-caccaaaagcaactcctctagcacaaggtgtgctaaacgaattactttacaaaaacagagtcaaaacaaacaaccaata 24313988  T
Q  147 caaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    |||| ||||| | ||||||||| ||||| ||  ||||||| |||||| | ||   |||||||||||||    
T  24313987 caaaccattaagcgatgcccaagcattggaaaggacttgagcaccacctatctctaccaaacctaaaa 24313920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 36272886 - 36272935
Alignment:
Q  61 tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaa 110  Q
    |||||||| ||| ||||||||||| ||||| ||||| |||||||||||||    
T  36272886 tatattaaccacaaaaagcaactcctctaatacaagatgtgccaaaagaa 36272935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 4416369 - 4416197
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||       ||||||||||||||||    
T  4416369 aacaataaaaaatggaattatataaatcaccaaaagcaactcttctagcacaaggtgtgtcaaaagagctactctacaaacttagagtcatacaaacaac 4416270  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| ||||||||||| ||||||||| ||||||| |||||||| || |||||||||||||||    
T  4416269 caaaacaaaccattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaaa 4416197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 4922705 - 4922877
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||||||||||||||| |||||||| ||||||||||||||| |||| || ||||||||| ||||||| |||| |||       |||||| ||||||||    
T  4922705 aacaatcaaaaatggaatatatattaa-caccaaaagcaactcctctagcataaggtgtgctaaaagaattactttacaaaaacagagtcaaacaaacaa 4922803  T
Q  142 ccaa-acaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    |||| ||||| ||||| | ||||||||| ||||| ||  ||||||| |||||| | || | |||||||||||||    
T  4922804 ccaatacaaaccattaagcgatgcccaagcattggaaaggacttgagcaccacctatctgtaccaaacctaaaa 4922877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 34875107 - 34874936
Alignment:
Q  43 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||  | || ||||||||||||||||||| |||||||||       |||||||||||||||    
T  34875107 aacaatcaaaaatggaatttatattaaccaccaaaagcagcttctgtagcacaaggtgtgccaaaagagctactctacaaacacagagtcatacaaacaa 34875008  T
Q  142 ccaaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
     |||| |||  |||| | |||| |||| ||||| ||| ||||||| |||||| | ||  ||||||||||||||    
T  34875007 acaaa-aaactattacgcgatgtccaagcattggaagggacttgagcaccacctatctaaaccaaacctaaaa 34874936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 27895376 - 27895442
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaaga 109  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |  |||||||||||||||||||    
T  27895376 aacaatcaaaaatggaattatattaaccaccaaaagcaactcttttggcacaaggtgtgccaaaaga 27895442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 6048707 - 6048784
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctac 119  Q
    |||||| ||||||||||| |||||||| ||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  6048707 aacaataaaaaatggaatatatattaaccaccaaaagcaactcctctagcataaggtgtgccaaaagaactactctac 6048784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 20209389 - 20209216
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtc-atacaaaca 140  Q
    |||||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||| ||||||| |||| |||       ||||| | |||||||    
T  20209389 aacaatcaaaaatggaatatatattaa-caccaaaagcaactcctctagcacaaggtgtgctaaaagaattactttacaaaaacagagtcaaaacaaaca 20209291  T
Q  141 accaa-acaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    ||||| ||||| ||||| | ||||||||| ||||| ||  ||||||| |||||| | || | |||||||||||||    
T  20209290 accaatacaaaccattaagcgatgcccaagcattggaaaggacttgagcaccacctatctgtaccaaacctaaaa 20209216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 8891966 - 8892107
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||| |||||||| || |||||||| ||||||||||| ||| | || ||||||| ||||||||||| |||||||||        ||||||||||||||    
T  8891966 aacaataaaaaatgggatatatattaaccaccaaaagcagctcctatagcacaaggcgtgccaaaagagctactctacaaacacatagtcatacaaacaa 8892065  T
Q  142 ccaaacaaaacattatgtgatgcccaaacattgtaagagacttg 185  Q
     |||  ||| ||| | ||||||||||||||||| ||| ||||||    
T  8892066 acaa--aaaccatcacgtgatgcccaaacattggaagggacttg 8892107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 40089807 - 40089872
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagc-aactcttctaacacaaggtgtgccaaa 106  Q
    |||||||||||||| ||| |||||||| |||||||||| ||| | |||| ||||||||||||||||    
T  40089807 aacaatcaaaaatgtaatatatattaaccaccaaaagcgaacccctctagcacaaggtgtgccaaa 40089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 9199898 - 9199749
Alignment:
Q  65 ttaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaaccaaacaaaacattatgtgatgc 164  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||       || || ||||||||||||||||||  |||| |||||||    
T  9199898 ttaatcaccaaaagcaactcttctagcacaaggtgtgtcaaaagaactactctacaaataaagaatcgtacaaacaaccaaacaaacaattacgtgatgc 9199799  T
Q  165 ccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  9199798 ccaaacattgtaagggacttgagcaccacatctcagaaccaaacctaaaa 9199749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 17079860 - 17079688
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||       ||||||||||||||||    
T  17079860 aacaatcaaaaatggaattatattaaccaccaaaagaaactcttctagcacaaggtgtgccaaaagaactactttacaaatacagagtcatacaaacaac 17079761  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| | ||||||||| ||||||||| ||||||| |||||| | || |||||||||||||||    
T  17079760 caaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccacttatctgaaccaaacctaaaa 17079688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 6831600 - 6831497
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||       ||||||||||||||||    
T  6831600 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactttacaaccatagagtcatacaaacaac 6831501  T
Q  143 caaa 146  Q
    ||||    
T  6831500 caaa 6831497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 17874471 - 17874319
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||| ||||||||||| |||||||| |||||||||||||||  |||||||||| ||||||| ||||| |||| |||       |||||||||||||||    
T  17874471 aacaataaaaaatggaatatatattaaacaccaaaagcaactcccctaacacaagttgtgccagaagaattactttacaagaacagagtcatacaaacaa 17874372  T
Q  142 ccaaacaaaaca-ttatgtgatgcccaaacattgtaagagacttgatcaccac 193  Q
    |||||  ||||| ||| |  ||| |||||||||| ||| ||||||| ||||||    
T  17874371 ccaaaacaaacacttaagcaatggccaaacattggaagggacttgagcaccac 17874319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 33722519 - 33722696
Alignment:
Q  43 aacaatcaaaaatggaat-----tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaa 137  Q
    ||||||||||||||||||     |||||  ||||||||||||||||| ||||| ||||||||||  |||| || |||| |||        ||||||||||    
T  33722519 aacaatcaaaaatggaatatatatatatatatcaccaaaagcaactcctctaatacaaggtgtgttaaaaaaattactttacaagtacaaagtcatacaa 33722618  T
Q  138 acaaccaaa-caaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    || |||||| |||| | ||| || |||||||| ||||| ||||||||||| |||||| | || | |||||||||||||    
T  33722619 actaccaaaacaaatcgttaagtaatgcccaagcattgaaagagacttgagcaccacttatctgtaccaaacctaaaa 33722696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 11061520 - 11061447
Alignment:
Q  47 atcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctac 119  Q
    |||||||||||||| |||| ||| ||||||||||| |||   || ||||||||||||||||||| |||||||||    
T  11061520 atcaaaaatggaatatataataaccaccaaaagcagctcaagtagcacaaggtgtgccaaaagagctactctac 11061447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 26526001 - 26526073
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactact 115  Q
    |||||| ||||||||||| |||||||| ||||||||||||||  |||| |||||||||||| ||||||| ||||    
T  26526001 aacaataaaaaatggaatatatattaa-caccaaaagcaacttctctagcacaaggtgtgctaaaagaattact 26526073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 33121986 - 33121814
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||| |||||||||       ||||||||||||||||    
T  33121986 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctggcataaggtgtgtcaaaagagctactctacaaatatagagtcatacaaacaac 33121887  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| ||||||||||| ||||||||| ||||| | |||||||| || |||||||||||||||    
T  33121886 caaaacaaaccattacgtgatgcccaagcattgtaagggacttaaacaccacatatctgaaccaaacctaaaa 33121814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 11639437 - 11639609
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||| |||       ||||||||||| ||||    
T  11639437 aacaatcaaaaatggaattatattaaccaccaaaatcaactcttcttgcacaaggtgtgccaaaagaactactttacaaatacagagtcatacaaccaac 11639536  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    | ||||||| ||||| | ||||||||| ||||||||| ||||||| |||||| | || |||||||||||||||    
T  11639537 caaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccacctatctgaaccaaacctaaaa 11639609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 36634916 - 36635081
Alignment:
Q  50 aaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaacc-aaaca 148  Q
    ||||||||||||||||||||||||||||||||||||| ||  | ||||||||||| ||||||||||||||       ||||||||||||||||| |||||    
T  36634916 aaaaatggaattatattaatcaccaaaagcaactcttttagtataaggtgtgccagaagaactactctacaaacatagagtcatacaaacaaccaaaaca 36635015  T
Q  149 aaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    || ||||| ||||||| |||||||| |||| ||||||| |||||||  |||||| |||||||||||    
T  36635016 aaccattacgtgatgctcaaacattataagggacttgaacaccacacatcagaagcaaacctaaaa 36635081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 8695560 - 8695389
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||| |||||||  ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||       |||| |||||| ||||    
T  8695560 aacaaacaaaaatataattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaac 8695461  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaa 213  Q
    | ||||||| ||||| | ||||||||| ||||||||| ||||||| |||||| | || ||||||||||||||    
T  8695460 caaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccacctatctgaaccaaacctaaa 8695389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 9047447 - 9047276
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||| |||||||  ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||       |||| |||||| ||||    
T  9047447 aacaaacaaaaatataattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaac 9047348  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaa 213  Q
    | ||||||| ||||| | ||||||||| ||||||||| ||||||| |||||| | || ||||||||||||||    
T  9047347 caaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccacctatctgaaccaaacctaaa 9047276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 1764603 - 1764676
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactc 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1764603 aacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctaacataaggtgtgccaaaagaactactc 1764676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 25342004 - 25341831
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||||||||||| ||| |||||||| |||||||||||||   |||| || |||||||||||||||||||||| |||       |||||||||||| ||    
T  25342004 aacaatcaaaaatgaaatatatattaaccaccaaaagcaaccactctagcataaggtgtgccaaaagaactactttacaaacatagagtcatacaaataa 25341905  T
Q  142 cc-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    || ||||||| ||||| | |||| |||| ||||| ||| ||||||| |||||||| || | |||||||||||||    
T  25341904 ccaaaacaaatcattaagcgatgtccaagcattgaaagggacttgagcaccacatatctgtaccaaacctaaaa 25341831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 47536740 - 47536911
Alignment:
Q  43 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||| |||||||||||| ||||||| |||||||| || ||| | || |||||| |||||||||||| |||||||||       |||||||||||||||    
T  47536740 aacaataaaaaatggaatttatattaaccaccaaaaacagctcctgtagcacaagatgtgccaaaagagctactctacaaacacagagtcatacaaacaa 47536839  T
Q  142 ccaaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
     |||| ||| ||||| | ||||||||| ||||| ||| ||||||| |||||| | || |||||||||||||||    
T  47536840 acaaa-aaagcattacgcgatgcccaagcattggaagggacttgagcaccacctatctgaaccaaacctaaaa 47536911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 32093582 - 32093411
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    ||||||||||||||| || |||||||| ||||||||||| ||| | ||  |||||| ||||||||||| |||||||||       |||||||| || |||    
T  32093582 aacaatcaaaaatgggatatatattaaccaccaaaagcagctcctatagtacaaggcgtgccaaaagagctactctacaaacacagagtcataaaagcaa 32093483  T
Q  142 ccaaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
     |||| ||| ||| | ||||||||||||||||| ||| ||||||| |||||| | || |||||||||||||||    
T  32093482 acaaa-aaatcatcacgtgatgcccaaacattggaagggacttgagcaccacctatctgaaccaaacctaaaa 32093411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 32233749 - 32233672
Alignment:
Q  43 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctac 119  Q
    |||||| ||||||| |||| ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  32233749 aacaataaaaaatgaaatttatattaaccaccaaaagcaactcctctagcacaaggtgtgccaaaagaactactctac 32233672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 19221599 - 19221770
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctac-nnnnnnngagtcatacaaaca 140  Q
    |||||| ||||||||||| ||||||||  |||||||||||||| |||| |||||||||||||||   ||||||| |||        ||||||||||||||    
T  19221599 aacaataaaaaatggaatatatattaacaaccaaaagcaactcctctagcacaaggtgtgccaa---aactactttacaaaacaccgagtcatacaaaca 19221695  T
Q  141 acca-aacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    |||| |||||| ||||| | ||||||||||||||| |||  |||||| |||||| | || | |||||||||||||    
T  19221696 accataacaaaccattaagcgatgcccaaacattggaaggaacttgagcaccacctatctgtaccaaacctaaaa 19221770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 26845341 - 26845514
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtc-atacaaaca 140  Q
    |||||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||| ||||||| |||| |||       ||||| | |||||||    
T  26845341 aacaatcaaaaatggaatatatattaa-caccaaaagcaactcctctagcacaaggtgtgctaaaagaattactttacaaaaacagagtcaaaacaaaca 26845439  T
Q  141 accaa-acaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    ||||| ||||| ||||| | |||| |||| ||||| ||  ||||||| |||||| | || | |||||||||||||    
T  26845440 accaatacaaaccattaagcgatgtccaagcattggaaaggacttgagcaccacctatctgtaccaaacctaaaa 26845514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 49501003 - 49500930
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactact 115  Q
    ||||| |||||||||||| |||||||| ||| ||||||||||| |||| |||||| ||||||||||||| ||||    
T  49501003 aacaagcaaaaatggaatatatattaaccacaaaaagcaactcctctagcacaagatgtgccaaaagaattact 49500930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 43122348 - 43122275
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactact 115  Q
    ||||| |||||||||||| |||||||| ||| ||||||||||| |||| || ||| ||||||||||||| ||||    
T  43122348 aacaagcaaaaatggaatatatattaaccacaaaaagcaactcctctagcataagatgtgccaaaagaattact 43122275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 50543693 - 50543747
Alignment:
Q  46 aatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtg 99  Q
    ||||||||||||||| ||||||||||| |||||||||||| |||| || ||||||    
T  50543693 aatcaaaaatggaatatatattaatcatcaaaagcaactcctctagcataaggtg 50543747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 46664948 - 46665021
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactact 115  Q
    ||||| ||||||| |||| |||||||| ||| ||||| ||||| |||| |||||| ||||||||||||| ||||    
T  46664948 aacaagcaaaaatagaatatatattaaccacaaaaagtaactcctctagcacaagatgtgccaaaagaattact 46665021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 54559104 - 54559076
Alignment:
Q  43 aacaatcaaaaatggaattatattaatca 71  Q
    |||||||||||||||||||||||||||||    
T  54559104 aacaatcaaaaatggaattatattaatca 54559076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 195
Target Start/End: Complemental strand, 10584084 - 10583932
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||        |||||||||||||||    
T  10584084 aacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaatttaaagtcatacaaacaac 10583985  T
Q  143 -caaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacat 195  Q
      ||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  10583984 taaaacaaatcattacgtgatgcccaaacattgtaag-gacttgaacaccacat 10583932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 178
Target Start/End: Complemental strand, 8446839 - 8446703
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| ||||| |||||||||       ||||||||||||||||    
T  8446839 aacaatcaaaaatggaattatattaatcatcaaaagcaactcttctggcacaaggtgtgccgaaagagctactctacaaatttagagtcatacaaacaac 8446740  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaag 178  Q
    | ||||||| ||||| |||||||||||||||||||||    
T  8446739 caaaacaaaccattacgtgatgcccaaacattgtaag 8446703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 45256476 - 45256325
Alignment:
Q  61 tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaacc-aaacaaaacattatgt 159  Q
    |||||||| |||||||| |||||| |||| |||||||||||||||||||||||||  ||       ||||||||||||||||| ||||||| ||||| |     
T  45256476 tatattaaccaccaaaaacaactcctctagcacaaggtgtgccaaaagaactacttcacaaaca--gagtcatacaaacaaccaaaacaaaccattaagc 45256379  T
Q  160 gatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
    ||||||||||||||| ||| ||||||| |||||||| || | |||||||||||||    
T  45256378 gatgcccaaacattgaaag-gacttgagcaccacatatctgtaccaaacctaaaa 45256325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 29470866 - 29470695
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||| ||||||| ||| |||||||| ||||||||||| ||| | || || |||||||||||||||| |||||||||       ||||||||||||| |    
T  29470866 aacaataaaaaatgaaatatatattaaccaccaaaagcagctcctgtagcataaggtgtgccaaaagagctactctacaaacacagagtcatacaaacga 29470767  T
Q  142 ccaaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
     |||| ||| ||| | | |||| |||| ||||| ||||||||||| |||||| | || |||||||||||||||    
T  29470766 acaaa-aaaccatcacgcgatgtccaagcattggaagagacttgaacaccacctatctgaaccaaacctaaaa 29470695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 31082277 - 31082173
Alignment:
Q  43 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    |||||| |||||||||||| ||||||| |||||||| |||||  | || ||||||||||||||||||| |||||||||       |||||||||||||||    
T  31082277 aacaataaaaaatggaatttatattaaccaccaaaaacaacttatgtagcacaaggtgtgccaaaagagctactctacaaacacagagtcatacaaacaa 31082178  T
Q  142 ccaaa 146  Q
     ||||    
T  31082177 acaaa 31082173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 17658303 - 17658376
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactact 115  Q
    ||||| |||||||||||| |||||||| ||||||||||| ||| | || ||||||||||||||||||| |||||    
T  17658303 aacaaccaaaaatggaatatatattaaccaccaaaagcagctcctgtagcacaaggtgtgccaaaagagctact 17658376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 26030965 - 26031029
Alignment:
Q  46 aatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaa 110  Q
    ||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  26030965 aatcaaaaatggaatatatattaa-caccaaaagcaactcctctagcacaaggtgtgctaaaagaa 26031029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 10267576 - 10267649
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactact 115  Q
    |||||| ||||||||||| |||| ||||||||||||  ||||| |||| |||||||||||||||| ||| ||||    
T  10267576 aacaataaaaaatggaatatataataatcaccaaaaataactcctctagcacaaggtgtgccaaaggaattact 10267649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 23679687 - 23679806
Alignment:
Q  94 aaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaaccaaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccac 193  Q
    |||||||||||||| | |||||||||       ||||||||||||||| |||| ||| ||| | | ||| ||||||||||| ||| |||||||  |||||    
T  23679687 aaggtgtgccaaaatagctactctacaaatacagagtcatacaaacaaacaaa-aaaccatcacgcgatacccaaacattggaagggacttgagtaccac 23679785  T
Q  194 atctcagaaccaaacctaaaa 214  Q
     | || |||||||||||||||    
T  23679786 ctatctgaaccaaacctaaaa 23679806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 11155017 - 11155054
Alignment:
Q  73 caaaagcaactcttctaacacaaggtgtgccaaaagaa 110  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11155017 caaaagcaactcctctaacacaagatgtgccaaaagaa 11155054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 36156625 - 36156693
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaa 110  Q
    ||||| |||||||| ||| |||||||| ||| ||||| ||||||||||  ||||| |||||||||||||    
T  36156625 aacaagcaaaaatgaaatatatattaaccacaaaaagtaactcttctagtacaagatgtgccaaaagaa 36156693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 213
Target Start/End: Original strand, 181600 - 181771
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||        ||| |||||| ||||    
T  181600 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacaaagttatacaaccaac 181699  T
Q  143 c-aaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaa 213  Q
    | ||||||| ||||| | ||||||||||||||||||| ||||||| |||||| | |  ||||||||||||||    
T  181700 caaaacaaaccattacgcgatgcccaaacattgtaagggacttgaacaccacctatttgaaccaaacctaaa 181771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 11550 - 11721
Alignment:
Q  43 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaa 141  Q
    ||||||||||||||| || |||||||| ||||||||||| ||| | || ||||||| ||||||||||| |||||||||       ||| |||||||||||    
T  11550 aacaatcaaaaatgggatatatattaaccaccaaaagcagctcctatagcacaaggcgtgccaaaagagctactctacaaacacagagccatacaaacaa 11649  T
Q  142 ccaaacaaaacattatgtgatgcccaaacattgtaagagacttgatcaccacatctcagaaccaaacctaaaa 214  Q
     |||| ||| ||| | | ||||||||||||||| ||| ||||||| |||||| | || |||||||||||||||    
T  11650 acaaa-aaaccatcacgcgatgcccaaacattggaagggacttgagcaccacctatctgaaccaaacctaaaa 11721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 1344 - 1447
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactactctacnnnnnnngagtcatacaaacaac 142  Q
    |||||| ||||||||||||||||||||||| |||| |||||||| || ||||||||||||| ||||||||||||||        ||||||||||||||||    
T  1344 aacaataaaaaatggaattatattaatcactaaaaacaactcttttagcacaaggtgtgccgaaagaactactctataaacatagagtcatacaaacaac 1443  T
Q  143 caaa 146  Q
    ||||    
T  1444 caaa 1447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 8457 - 8385
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactact 115  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||  |||||| ||||||||||    
T  8457 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaagacgtgccacaagaactact 8385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 1455 - 1383
Alignment:
Q  43 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctaacacaaggtgtgccaaaagaactact 115  Q
    ||||| ||||||||||| ||||||||  ||||||||||||||| ||| |||||||||||||| ||||| ||||    
T  1455 aacaaacaaaaatggaaatatattaaataccaaaagcaactctcctagcacaaggtgtgccagaagaattact 1383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University