View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_low_4 (Length: 576)
Name: NF5852_low_4
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 264 - 555
Target Start/End: Complemental strand, 33655039 - 33654748
Alignment:
| Q |
264 |
tctcaggtattggatcactctgaagaagacgagtcaactgcatcctctgagtctacttatgagagtgattcagatgacaattcaaagcgaagcaacaaga |
363 |
Q |
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| T |
33655039 |
tctcaggtattggatcactctgaagaagacgagtcaactgcatcctctgagtctacttatgagagtgattcagatgacaattcaaagcgaagcaacaaga |
33654940 |
T |
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| Q |
364 |
aacatggaaagaaatcgtcaaggaaggtagttatccgtaacataaactatataacttccaatggagacggagaaaaaggtagtatcactgaagggagttt |
463 |
Q |
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| T |
33654939 |
aacatggaaagaagtcgtcaaggaaagtagttatccgtaacataaactatataacttccaagggagacggagaaaaaggtagtatcactgaagggagttt |
33654840 |
T |
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| Q |
464 |
gtcgaatgaggaagaatttatcaatggaaattccttgaaacacaaggtagaggaagctgttgcgtcactggataaaagaaacaggtcaacct |
555 |
Q |
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| T |
33654839 |
gtcgaatgaggaagaatttatcaatggaaattccttgaaacacaaggtagaggaagctgttgcgtcactggagaaaagaaacaggccaacct |
33654748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 33655287 - 33655067
Alignment:
| Q |
16 |
catcatccgatggaagggctcaaatgccgaggtcatggccgaaccatcatccacactacattcacaattttcagggtcatggatttcaacaaacacctcc |
115 |
Q |
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| T |
33655287 |
catcatccgatggaagggctcaaatgctgaggtcatggccgaaccatcatccacagtacattcacaattttcagggtcatgcatttcaacaaacgcctcc |
33655188 |
T |
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| Q |
116 |
ataccaaggatacatgtatcctggtatgcaggttccgtctccgtattatcctgggaatatgcaatggcctccaaacggggatcgctctcacatcgttcat |
215 |
Q |
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| T |
33655187 |
ataccaaggatacatgtatcctggtatgcaggttccgtctccgtattatcctgggaatatgcaatggcctccaaacggggatcgctctcacattgttcat |
33655088 |
T |
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| Q |
216 |
gaccaagaaatggattctcat |
236 |
Q |
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| T |
33655087 |
gaccaagaaatggattctcat |
33655067 |
T |
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