View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5852_low_41 (Length: 202)

Name: NF5852_low_41
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5852_low_41
NF5852_low_41
[»] chr3 (1 HSPs)
chr3 (13-182)||(8522223-8522398)
[»] chr5 (4 HSPs)
chr5 (49-142)||(42122646-42122739)
chr5 (59-139)||(42116886-42116966)
chr5 (49-139)||(42128044-42128134)
chr5 (65-115)||(41572860-41572910)
[»] chr4 (1 HSPs)
chr4 (49-155)||(11117289-11117396)
[»] chr6 (1 HSPs)
chr6 (59-119)||(25523884-25523943)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 8522398 - 8522223
Alignment:
Q  13 gagtgagatgaaggacaagaatgacgaggaaccatagttcaatcacgaatcagaattaga------tggtgcaaatgtcgtagttttattgttgtaatta 106  Q
    |||||| | ||||||||||||||||||||||||| ||||||||||||||||||||| |||      ||||||||||||||||||||| ||||||||||||    
T  8522398 gagtgaaaagaaggacaagaatgacgaggaaccaaagttcaatcacgaatcagaatcagaatcagatggtgcaaatgtcgtagttttgttgttgtaatta 8522299  T
Q  107 ttttctcttttgtctgttgggtttttactttctgttaaaacaagcttgactcttttgatcttgctagtttgatttt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8522298 ttttctcttttgtctgttgggtttttactttctgttaaaacaagcttgactcttttgatcttgctagtttgatttt 8522223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 42122739 - 42122646
Alignment:
Q  49 gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttctgtt 142  Q
    |||||| || |||||||||| |||||||||||||||| |||||||||||||||| ||| ||| ||| |||| |||||| |||||||||||||||    
T  42122739 gttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttgtagttactttatctgttgtgtgttggttttttactttctgtt 42122646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 42116966 - 42116886
Alignment:
Q  59 gaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttct 139  Q
    |||||||||| |||||||||||||||| |||||||||||||||  ||||||||||| |||| |||| | ||||||||||||    
T  42116966 gaatcagaatcagatggtgcaaatgtcatagttttattgttgttgttattttctctattgtgtgttagttttttactttct 42116886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 42128134 - 42128044
Alignment:
Q  49 gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttct 139  Q
    |||||| || |||||||||| |||||||||||||||| ||||||||||||| || ||||||||||| |||| | || | ||||||||||||    
T  42128134 gttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttctagttattttctctattgtgtattagttttttactttct 42128044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 41572860 - 41572910
Alignment:
Q  65 gaattagatggtgcaaatgtcgtagttttattgttgtaattattttctctt 115  Q
    ||||||||||||||| ||||  ||||||||||||| | |||||||||||||    
T  41572860 gaattagatggtgcagatgtgatagttttattgttctgattattttctctt 41572910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 11117396 - 11117289
Alignment:
Q  49 gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttctg-ttaaaac 147  Q
    |||||| || |||||||||| |||||||||||||||| |||||||||||| ||| ||| ||||||  |||  |||||| ||||||||||||| ||||||     
T  11117396 gttcaaacatgaatcagaatcagatggtgcaaatgtcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttctgtttaaaat 11117297  T
Q  148 aagcttga 155  Q
    ||||||||    
T  11117296 aagcttga 11117289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 25523884 - 25523943
Alignment:
Q  59 gaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgt 119  Q
    |||||||||| ||||| |||||||||| |||||| |||||| || ||||||||||||||||    
T  25523884 gaatcagaatcagatgatgcaaatgtcatagttt-attgttttagttattttctcttttgt 25523943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University