View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5852_low_5 (Length: 558)
Name: NF5852_low_5
Description: NF5852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5852_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 140 - 466
Target Start/End: Original strand, 12939653 - 12939979
Alignment:
| Q |
140 |
ttaaccctaccatatttactgtaattcatcatgatatcttccataatgtggtaagcatctccataaacaaataatgaactcttcaaatttgtcctcaatt |
239 |
Q |
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| T |
12939653 |
ttaaccctaccatatttactgtaattcatcatgatatcttccataatgtggtaagcatctccataaacaaataatgaacccttcaaatctgtcctcaatt |
12939752 |
T |
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| Q |
240 |
cttcaacgaggttcttcaattgggtgttaaataattgagctaggtgattaggaaatttgacacacttgtctccagaaaatgggtttaaatctctcataca |
339 |
Q |
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| T |
12939753 |
cttcaacgaggttcttcaattgggtgttaaataattgagccaggtgattaggaaatttgacacacttgtctccagaaaatgggtttaaatctctcataca |
12939852 |
T |
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| Q |
340 |
tggtatacacccaataggaccaacatttatcacaacaatttttctggctcctagagtgaataaccgctgcaaatagttttaataatatgatatgtacaat |
439 |
Q |
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| T |
12939853 |
tggtatacacccaataggaccaacatttatcacaacaatttttctggctcctagagtgaataaccgctgcaaatagttttaataatatgatatgtacagt |
12939952 |
T |
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| Q |
440 |
atcaacaaagaaaatataaatatttgt |
466 |
Q |
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| T |
12939953 |
atcaacaaagaaaatataaatatttgt |
12939979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 12939522 - 12939605
Alignment:
| Q |
9 |
atctctataaacatctatattgtaaaatgtgattagacttacttataaaataattatactaccagggcataacagttaatcaat |
92 |
Q |
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| T |
12939522 |
atctctataaacatctatattgtaaaatgtgattagacgaacttataaaataattatactaccagggcataacagttaatcaat |
12939605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 183 - 390
Target Start/End: Original strand, 12944914 - 12945121
Alignment:
| Q |
183 |
taatgtggtaagcatctccataaacaaataatgaactcttcaaatttgtcctcaattcttcaacgaggttcttcaattgggtgttaaataattgagctag |
282 |
Q |
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| T |
12944914 |
taatgtcgtaagcatctgcataaagaattaacgatcccaccaagtttgtcctcaattcttcaataaggctcttcaattgggtgttaaataattgagcaag |
12945013 |
T |
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| Q |
283 |
gtgattaggaaatttgacacacttgtctccagaaaatgggtttaaatctctcatacatggtatacacccaataggaccaacatttatcacaacaattttt |
382 |
Q |
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| T |
12945014 |
ttgattaggaaattcagcacactcgtctccagaaagtcgattaatatctctcatatatggcatacaccccattggcccaacatttggcacaacaattttc |
12945113 |
T |
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| Q |
383 |
ctggctcc |
390 |
Q |
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|| ||||| |
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| T |
12945114 |
ctagctcc |
12945121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 12940010 - 12940058
Alignment:
| Q |
495 |
ttcatatattaaagttttctaggtttttagcaaaattacggttatttgt |
543 |
Q |
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| T |
12940010 |
ttcatatattaaagttttctaggtttttagcaaaattacggttatttgt |
12940058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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