View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5853-Insertion-3 (Length: 301)

Name: NF5853-Insertion-3
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5853-Insertion-3
NF5853-Insertion-3
[»] chr3 (1 HSPs)
chr3 (12-301)||(27158809-27159096)


Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 301
Target Start/End: Complemental strand, 27159096 - 27158809
Alignment:
Q  12 gataatctattcaaaatatatttatatacacaacatatactaggtgtatgttttagaaggtagtaatttcttgtttcgtcaatatgaagtcatgcataca 111  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27159096 gataatctattcaaaatatatttatatacacaacata--ctaggtgtatgttttagaaggtagtaatttcttgtttcgtcaatatgaagtcatgcataca 27158999  T
Q  112 tagatttttgcgggccagaatatgatcgtttttgaaccatatattgcatggacctactttgaaatttagaatcaaattctttgtatcaaatacatggaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27158998 tagatttttgcgggccagaatatgatcgtttttgaaccatatattgcatggacctactttgaaatttagaatcaaattctttgtatcaaatacatggaca 27158899  T
Q  212 tggactcatccataacggttaatgaaggaattaattatggctcaaatatgagacgtctaaattctccaagctagagatataccttataca 301  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  27158898 tggactcatccataacggttaataaaggaattaattatggctcagatgtgagacgtctaaattctccaagctagagatataccttataca 27158809  T

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