View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_high_21 (Length: 297)
Name: NF5853_high_21
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 43132325 - 43132590
Alignment:
| Q |
13 |
aatattaaaatatcaatcttacaagttagttctacaatatctacatgacgtggtttgatcaggtgcatctatnnnnnnngttttacacataaaaattaaa |
112 |
Q |
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| T |
43132325 |
aatattaaaatatcaatcttacaagttagttctacaatatccacatgacgtggtttgatcaggtgcatctataaaaaa-gttttacacataaaa-ttaaa |
43132422 |
T |
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| Q |
113 |
tacagaaaattattcttcacatatgcacgataaacaaatgaggaaaggttcacaaaatatgagttgagtctattgaaaagagttacaactaacctgccac |
212 |
Q |
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| T |
43132423 |
tacagaaaattattcttcacatatgcacgataaacaaatgaggaaaggttcacaaaatatgagttgagtctattgaaaagagttacaactaacctgccac |
43132522 |
T |
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| Q |
213 |
aacatatcaaaataaggttcaaatattagttgtggaaggtattcattaatcaacccaattacatcgtt |
280 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43132523 |
aacttatcaaaataaggttcaaatattagttgtggaaggtattcattaatcaacccaattacatcgtt |
43132590 |
T |
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