View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_high_28 (Length: 250)
Name: NF5853_high_28
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_high_28 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 41324534 - 41324292
Alignment:
| Q |
8 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatatacannnnnnnaagcatcc |
107 |
Q |
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| T |
41324534 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatatacatttttttaagcatcc |
41324435 |
T |
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| Q |
108 |
ttctagatatactaagtagaaatcacttccaaatttcaagcnnnnnnngagttgcataaataacaagattaatactacctaaattcattgataaatttaa |
207 |
Q |
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| T |
41324434 |
ttctagatatactaagtagaaatcacttccaaatttcaagcaaaaaaagagttgcataaataacaagattaatactacctaaattcattgataaatttaa |
41324335 |
T |
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| Q |
208 |
ttatgtaacataatacaggtggatactctcatgcactagagga |
250 |
Q |
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| T |
41324334 |
ttatgtaacataatacaggtggatactctcatgcactagagga |
41324292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 41309836 - 41309754
Alignment:
| Q |
8 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatata |
90 |
Q |
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||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
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| T |
41309836 |
agataattctcaggacattgaaacttctcttttggggtatacttttgcaaggtaaacaaaactcttcaaactcactaaatata |
41309754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 27656723 - 27656779
Alignment:
| Q |
8 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaac |
64 |
Q |
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||||||| |||||||||| ||||||||||| |||||| |||| ||||||||||||| |
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| T |
27656723 |
agataatttttaggacattaaagcttctcttctggggtttacttttgcaaggtaaac |
27656779 |
T |
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