View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5853_high_29 (Length: 250)

Name: NF5853_high_29
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5853_high_29
NF5853_high_29
[»] chr5 (13 HSPs)
chr5 (4-247)||(10603122-10603365)
chr5 (1-247)||(10599459-10599700)
chr5 (1-130)||(10590141-10590270)
chr5 (1-130)||(10579373-10579502)
chr5 (11-247)||(9837925-9838161)
chr5 (90-205)||(7191460-7191575)
chr5 (21-140)||(10594144-10594263)
chr5 (11-62)||(19607647-19607698)
chr5 (23-145)||(10661784-10661906)
chr5 (82-205)||(10610157-10610280)
chr5 (9-62)||(10549167-10549220)
chr5 (21-62)||(10653984-10654025)
chr5 (12-52)||(10748807-10748847)
[»] chr6 (3 HSPs)
chr6 (95-181)||(12905647-12905733)
chr6 (95-136)||(12898025-12898066)
chr6 (95-136)||(12956538-12956579)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 10603122 - 10603365
Alignment:
Q  4 tggatgtcaacaaattgtctggtacatttccttcttgtctttataatatgacatctcttcaagtgatctcagttgcggtgaatagctttagtggctctct 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10603122 tggatgtcaacaaattgtctggtacatttccttcttgtctttataatatgacatctcttcaagtgatctcagttgcagtgaatagctttagtggctctct 10603221  T
Q  104 tccacccaatatgttccacactctccccaatctccaatattttacagttggatcaaatcaattcttaggtccaatccccacttcaatttcgaatgcttct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10603222 tccacccaatatgttccacactctccccaatctccaatattttacagttggatcaaatcaattcttaggtccaatccccacttcaatttcgaatgcttct 10603321  T
Q  204 tctttgacattatttgaaattggtgacaaccatattcttggaca 247  Q
    ||||||||||||||||||||||||||||||||| || |||||||    
T  10603322 tctttgacattatttgaaattggtgacaaccattttgttggaca 10603365  T

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Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 10599459 - 10599700
Alignment:
Q  1 cagtggatgtcaacaaattgtctggtacatttccttcttgtctttataatatgacatctcttcaagtgatctcagttgcggtgaatagctttagtggctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||     || |||||| ||||||||||| | ||||| ||||||||||||    
T  10599459 cagtggatgtcaacaaattgtctggtacatttccttcttgtctttataatatg-----tcatcaagttatctcagttgcagcgaataactttagtggctc 10599553  T
Q  101 tcttccacccaatatgttccacactctccccaatctccaatattttacagttggatcaaatcaattcttaggtccaatccccacttcaatttcgaatgct 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||| ||||||||||| ||||||    
T  10599554 tcttccacccaatatgttctacactctccccaatctccaatattttacggtcggatcaaataaattctcaggtccaatccctacttcaatttcaaatgct 10599653  T
Q  201 tcttctttgacattatttgaaattggtgacaaccatattcttggaca 247  Q
    ||||||||||||||||||||||| |||||||||||| || |||||||    
T  10599654 tcttctttgacattatttgaaatcggtgacaaccattttgttggaca 10599700  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 10590270 - 10590141
Alignment:
Q  1 cagtggatgtcaacaaattgtctggtacatttccttcttgtctttataatatgacatctcttcaagtgatctcagttgcggtgaatagctttagtggctc 100  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||   | |||||||||||| | ||||||||||||||||||    
T  10590270 cagtgcatgccaacaaattgtctggtacatttctttcttgtctttataatatgtcatctcttacggggatctcagttgcagcgaatagctttagtggctc 10590171  T
Q  101 tcttccacccaatatgttccacactctccc 130  Q
    |||||| |||||||||||| ||||||||||    
T  10590170 tcttccgcccaatatgttcaacactctccc 10590141  T

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Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 10579373 - 10579502
Alignment:
Q  1 cagtggatgtcaacaaattgtctggtacatttccttcttgtctttataatatgacatctcttcaagtgatctcagttgcggtgaatagctttagtggctc 100  Q
    ||||| ||| |||||| |||||||||||||||| ||||||||||||||||||| ||||||||   | |||||||||||  | ||||||||||||||| ||    
T  10579373 cagtgcatgccaacaagttgtctggtacatttctttcttgtctttataatatgtcatctcttacggggatctcagttgaagcgaatagctttagtggttc 10579472  T
Q  101 tcttccacccaatatgttccacactctccc 130  Q
    ||||||||||||||||||| ||||||||||    
T  10579473 tcttccacccaatatgttcaacactctccc 10579502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 9838161 - 9837925
Alignment:
Q  11 caacaaattgtctggtacatttccttcttgtctttataatatgacatctcttcaagtgatctcagttgcggtgaatagctttagtggctctcttccaccc 110  Q
    ||||||| | || |||||||||||  ||||||| || |||||| ||||||||  | ||||||||   || |  |||  ||||||||||||||||||| |     
T  9838161 caacaaactatcaggtacatttccaccttgtctctacaatatgtcatctcttacattgatctcaacagcagataatcactttagtggctctcttccatca 9838062  T
Q  111 aatatgttccacactctccccaatctccaatattttacagttggatcaaatcaattcttaggtccaatccccacttcaatttcgaatgcttcttctttga 210  Q
    ||||||||||| |||||||| ||||||| || ||||  | | |||   ||| || |||||||| ||||||| ||||| |||   ||||||||| ||||||    
T  9838061 aatatgttccaaactctccctaatctccgatcttttgaaataggagggaataaaatcttaggttcaatcccaacttccattgtaaatgcttctactttga 9837962  T
Q  211 cattatttgaaattggtgacaaccatattcttggaca 247  Q
    ||| |||||| ||| |||  |||||| || |||||||    
T  9837961 catcatttgacattagtggaaaccattttgttggaca 9837925  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 7191460 - 7191575
Alignment:
Q  90 tttagtggctctcttccacccaatatgttccacactctccccaatctccaatattttacagttggatcaaatcaattcttaggtccaatccccacttcaa 189  Q
    |||| ||| ||||||||||||||||||||| |||| ||| ||||||| ||||||||  || | |||  ||||||||||| |||| ||||||| | ||| |    
T  7191460 tttaatggatctcttccacccaatatgttcaacaccctctccaatcttcaatatttagcaatcggaggaaatcaattctcaggtacaatccctatttcca 7191559  T
Q  190 tttcgaatgcttcttc 205  Q
    |||| |||||||||||    
T  7191560 tttcaaatgcttcttc 7191575  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 10594144 - 10594263
Alignment:
Q  21 tctggtacatttccttcttgtctttataatatgacatctcttcaagtgatctcagttgcggtgaatagctttagtggctctcttccacccaatatgttcc 120  Q
    ||||||||||||||  |||||||| | |||||||||||||||   |  |||||||   | |  ||||||||  ||||||||||||||||| | |||||||    
T  10594144 tctggtacatttccaccttgtcttcacaatatgacatctcttactggcatctcagccccagcaaatagcttcggtggctctcttccacccgacatgttcc 10594243  T
Q  121 acactctccccaatctccaa 140  Q
    | ||||||||||||||||||    
T  10594244 aaactctccccaatctccaa 10594263  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 19607698 - 19607647
Alignment:
Q  11 caacaaattgtctggtacatttccttcttgtctttataatatgacatctctt 62  Q
    ||||||||| |||||||||||||||||||||||||  |||||| ||||||||    
T  19607698 caacaaattatctggtacatttccttcttgtcttttcaatatgtcatctctt 19607647  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 10661906 - 10661784
Alignment:
Q  23 tggtacatttccttcttgtctttataatatgacatctcttcaagtgatctcagttgcggtgaatagctttagtggctctcttccacccaatatgttccac 122  Q
    |||| |||||||||||||||||||||||||| |||||||    | |||||||||||     |||   |||| ||| ||||||||| ||||||||||| ||    
T  10661906 tggttcatttccttcttgtctttataatatgtcatctctaactgggatctcagttggacccaatgattttaatggatctcttccatccaatatgttcaac 10661807  T
Q  123 actctccccaatctccaatattt 145  Q
    || ||| ||||||| ||||||||    
T  10661806 accctctccaatcttcaatattt 10661784  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 10610157 - 10610280
Alignment:
Q  82 tgaatagctttagtggctctcttccacccaatatgttccacactctccccaatctccaatattttacagttggatcaaatcaattcttaggtccaatccc 181  Q
    ||||||| |||| |||||| ||||||||||| |||||  |||| ||||| |||||| ||| ||||  |  ||||  ||||||||||| ||||||||||||    
T  10610157 tgaatagatttaatggctcacttccacccaacatgttttacaccctccctaatctcaaatcttttgaacctggaggaaatcaattctcaggtccaatccc 10610256  T
Q  182 cacttcaatttcgaatgcttcttc 205  Q
       ||| ||| | |||||||||||    
T  10610257 tgtttccattgcaaatgcttcttc 10610280  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 10549167 - 10549220
Alignment:
Q  9 gtcaacaaattgtctggtacatttccttcttgtctttataatatgacatctctt 62  Q
    ||||||||| | ||||||||||||||||  |||||||| |||||| ||||||||    
T  10549167 gtcaacaaaatatctggtacatttcctttgtgtctttacaatatgtcatctctt 10549220  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 10654025 - 10653984
Alignment:
Q  21 tctggtacatttccttcttgtctttataatatgacatctctt 62  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||    
T  10654025 tctggtacatttcattcttgtttttataatatgtcatctctt 10653984  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 10748847 - 10748807
Alignment:
Q  12 aacaaattgtctggtacatttccttcttgtctttataatat 52  Q
    ||||| ||||||||||  |||||||||||||||||||||||    
T  10748847 aacaatttgtctggtatgtttccttcttgtctttataatat 10748807  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 12905647 - 12905733
Alignment:
Q  95 tggctctcttccacccaatatgttccacactctccccaatctccaatattttaca-gttggatcaaatcaattcttaggtccaatccc 181  Q
    ||||||| |||||||||| ||||||||||| |||||||||||  ||| | |||||  ||| ||||||||||||||  |||||||||||    
T  12905647 tggctcttttccacccaacatgttccacaccctccccaatcttaaat-tattacattttgcatcaaatcaattctctggtccaatccc 12905733  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 12898025 - 12898066
Alignment:
Q  95 tggctctcttccacccaatatgttccacactctccccaatct 136  Q
    ||||||| |||||||||| ||||||||||| |||||||||||    
T  12898025 tggctcttttccacccaacatgttccacaccctccccaatct 12898066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 12956538 - 12956579
Alignment:
Q  95 tggctctcttccacccaatatgttccacactctccccaatct 136  Q
    ||||||| |||||||||| ||||||||||| |||||||||||    
T  12956538 tggctcttttccacccaacatgttccacaccctccccaatct 12956579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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