View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_high_33 (Length: 243)
Name: NF5853_high_33
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 41324068 - 41323846
Alignment:
| Q |
4 |
ctaccttgaggtctggacgcatagccattttcactgcctataaatggcaatggtgagataacacaacactcatttaatttcaaatttcaaatatactaat |
103 |
Q |
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| T |
41324068 |
ctaccttgaggcctggacgcatagccattttcactgcctataaatggcaatggtgagataacacaacactcatttaatttcaaatttcaaatatactaat |
41323969 |
T |
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| Q |
104 |
tgaaattctgaactttcatttactaatgtacaataatatacatgagctaggtttggaggctttttggcatttctcatttacatgatcacaactttcaccc |
203 |
Q |
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| T |
41323968 |
tgaaagtctgaactttcatttactaatgtacaataatatacatgagctaggtttggaggctttttggcatttctcatttacatgatcacaactttcaccc |
41323869 |
T |
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| Q |
204 |
tctacgttcctgattggagtttc |
226 |
Q |
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||||||||||||||||||||||| |
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| T |
41323868 |
tctacgttcctgattggagtttc |
41323846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 41309461 - 41309259
Alignment:
| Q |
4 |
ctaccttgaggtctggacgcatagccattttcactgcctataaatggcaatggtgagata----acacaacactcatttaatttcaaatttcaaatatac |
99 |
Q |
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| T |
41309461 |
ctaccttgagtcccggacgcatagccattttcactgcctataaatggcaatggtgagatagataacacaacacacatttaatttcaaatttcaaatatgc |
41309362 |
T |
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| Q |
100 |
taattgaaattctgaa----ctttcatttactaatgtacaataatataca----tgagctaggtttggaggctttttggcatttctcatttacatgatca |
191 |
Q |
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| T |
41309361 |
taattgaaattgtgaacttccttccattgattaatgtac-acaatatacatgtctgacttaggtttggaggcttcatggcatttctcatttacatgatca |
41309263 |
T |
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| Q |
192 |
caac |
195 |
Q |
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|||| |
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| T |
41309262 |
caac |
41309259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 27657748 - 27657822
Alignment:
| Q |
151 |
taggtttggaggctttttggcatttctcatttacatgatcacaactttcaccctctacgttcctgattggagttt |
225 |
Q |
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|||| ||||||| ||| |||||||| | ||||||||| |||| ||||||| |||||||||||| ||||||||||| |
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| T |
27657748 |
taggcttggagggtttgtggcatttgttatttacatggtcactactttcagcctctacgttccagattggagttt |
27657822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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