View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_high_37 (Length: 241)
Name: NF5853_high_37
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9473656 - 9473884
Alignment:
| Q |
1 |
ccacataaagaagaagnnnnnnnttagtatttcactatttcccatttgggtcttgtatatattgcaaaatggtcctttaaacacacaaaccaagttgtta |
100 |
Q |
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| T |
9473656 |
ccacataaagaagaagaaaaaaattagtatttcactatttcccatttgggtcttgtagatattgcaaaatggtcctttaaacacacaaaccaagttatta |
9473755 |
T |
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| Q |
101 |
cattacatctaacaattatacaataggagtgtcaaccaatcaagttaataatgacatt-aaagatcaatgctttaatagttaagaattgaattataaaat |
199 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9473756 |
cattacatctaacaattatacaataggaatgtcaaacaatc-agtaaataatgacattcaaagatc-atgctttaatagttaagaattgaattataaaat |
9473853 |
T |
|
| Q |
200 |
taatggcattcaaatgacacaaaagatgatg |
230 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
9473854 |
taatggcattcaaatgacacaaaagatgatg |
9473884 |
T |
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