View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_high_4 (Length: 529)
Name: NF5853_high_4
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 514
Target Start/End: Complemental strand, 42728260 - 42727770
Alignment:
| Q |
10 |
aagaatatgtgcgatacataatgaggagcnnnnnnngttctccacgacatatggtatcatatgcaatagaccgcaaacagattattttaacgaggtaatt |
109 |
Q |
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| T |
42728260 |
aagaatatgtgcgatacacaatgaggagctttttttattctccacgacatatggtatcatatgcaatagaccgcaaacagat--------------aatt |
42728175 |
T |
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| Q |
110 |
ttatcttaacaattgttctgtttccattaactttatattcaccaacttttttcattttatttgttcagcatactttttcgaaagaagtgaaggatgtgct |
209 |
Q |
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| T |
42728174 |
ttatcttaacaattgttctatttccattaactttatattcactaacttttttcattttatttgttcagcatactttttcgaaagaagtgaaggatgtgct |
42728075 |
T |
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| Q |
210 |
acagaatgatttaatcaatggagacaacaataggttttggcaacataggatttacatagaaaggcttccggtttagatcaagaaatattccatatgatnn |
309 |
Q |
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| T |
42728074 |
atagaatgatttaatcaatggagacaacaataggttttggcaacatgggatttacatagaaaggcttccggtttagatcaagaaatattccatatgat-a |
42727976 |
T |
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| Q |
310 |
nnnnntatatcaaaacccaactagcagaggtaatgaatggagttgaacctatatttgtctgtaaaggt-nnnnnnnncgatcgtgaattagcagaaattc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42727975 |
aaaaatatatcaaaacccaactagcagaggtaatgaatggagttgaacctatatttgtctgtaaaggtaaaaaaaaacgatcgtgaattagcagaaattc |
42727876 |
T |
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| Q |
409 |
gctattgcttaaacatgactaactatttcgtagcatgtggtcaccaacagctacaagatatagattgtgacccattatcagatatattatttaagttata |
508 |
Q |
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| T |
42727875 |
gctattgcttaaacatgactaactatttcgtagcatgtggtcaccaacagctacaagatatagattgtgacccattatcagatatattatttaagttata |
42727776 |
T |
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