View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_high_6 (Length: 480)
Name: NF5853_high_6
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 96 - 315
Target Start/End: Original strand, 32423840 - 32424055
Alignment:
| Q |
96 |
tagtttgcctgctataactgctctatgcatttttacgtagtaagcgatctcggccacagaaaaatgaactaacaatttcatataatttcaattttaacta |
195 |
Q |
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| T |
32423840 |
tagtttgcctgctataactgctctatgcatttttacgtagtaggcgatctcggccacagaaaaatgaactaacaatttcatataatttcaattttaacca |
32423939 |
T |
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| Q |
196 |
tttatttttgatcgaacggtccttatcagttactgcgttaacacataactgcgtagaatctatttcgtgatgaacaaggcaaatcctttactatgtttca |
295 |
Q |
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| T |
32423940 |
ttcatttttgatcgaacggtccttatcggttaatgcgttaacacataactgcgtagaatctatttcgtgatgaacaaggc----cctttactatgtttca |
32424035 |
T |
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| Q |
296 |
cactttatgttgttttgatt |
315 |
Q |
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|||||||||||||||||||| |
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| T |
32424036 |
cactttatgttgttttgatt |
32424055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 353 - 474
Target Start/End: Original strand, 32424085 - 32424206
Alignment:
| Q |
353 |
tactcattctctatttcaacttctttcatttcgttccttcactcaccactcacatacacataccatggcgaaccaaatcatcactcgtttcattcctaaa |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
32424085 |
tactcattctctatttcaacttctttcatttcgttccttcactcaccactcacatacacataccatggcgaaccaaatcatcactcttgtcattcctaaa |
32424184 |
T |
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| Q |
453 |
accctaactcccttcttctctc |
474 |
Q |
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| T |
32424185 |
accctaactcccttcttctctc |
32424206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 32423791 - 32423852
Alignment:
| Q |
20 |
atttattcattaagaatactatgggagggtgatttaatgttcctcacaatagtttgcctgct |
81 |
Q |
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| T |
32423791 |
atttattcattaagaatactatgggagggtgatttaatgttcctcacaatagtttgcctgct |
32423852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 417 - 474
Target Start/End: Original strand, 1542250 - 1542307
Alignment:
| Q |
417 |
atggcgaaccaaatcatcactcgtttcattcctaaaaccctaactcccttcttctctc |
474 |
Q |
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| T |
1542250 |
atggcgaaccaaatcatcactcgtgtcattcctaaaaccctaactcccttcttctctc |
1542307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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