View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5853_low_1 (Length: 765)

Name: NF5853_low_1
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5853_low_1
NF5853_low_1
[»] chr7 (40 HSPs)
chr7 (300-584)||(32538337-32538616)
chr7 (300-548)||(37632634-37632881)
chr7 (17-229)||(32538040-32538265)
chr7 (375-555)||(3407401-3407575)
chr7 (380-555)||(28363241-28363412)
chr7 (452-583)||(3937272-3937403)
chr7 (301-423)||(44959537-44959659)
chr7 (312-423)||(3407576-3407687)
chr7 (312-423)||(16279523-16279634)
chr7 (300-417)||(3936892-3937010)
chr7 (300-420)||(40210276-40210398)
chr7 (17-229)||(37632953-37633180)
chr7 (312-420)||(24954613-24954722)
chr7 (462-555)||(16279754-16279847)
chr7 (312-420)||(36107424-36107535)
chr7 (312-420)||(41987080-41987189)
chr7 (663-751)||(32538687-32538770)
chr7 (339-439)||(25981358-25981458)
chr7 (375-552)||(44959660-44959832)
chr7 (312-390)||(44524147-44524225)
chr7 (312-390)||(49105590-49105668)
chr7 (300-398)||(33438785-33438884)
chr7 (17-112)||(36107107-36107202)
chr7 (17-112)||(44959228-44959323)
chr7 (356-422)||(33130705-33130771)
chr7 (17-112)||(40210603-40210698)
chr7 (375-437)||(16279635-16279697)
chr7 (312-418)||(23807336-23807442)
chr7 (326-388)||(37452363-37452425)
chr7 (468-514)||(41987205-41987251)
chr7 (339-390)||(24685319-24685370)
chr7 (17-112)||(24954297-24954392)
chr7 (355-390)||(37405126-37405161)
chr7 (358-432)||(12342258-12342332)
chr7 (468-514)||(36107551-36107597)
chr7 (518-572)||(37451923-37451977)
chr7 (468-514)||(40210214-40210260)
chr7 (17-54)||(10461627-10461664)
chr7 (28-81)||(16279220-16279273)
chr7 (667-704)||(37632488-37632525)
[»] chr5 (45 HSPs)
chr5 (300-570)||(40484590-40484867)
chr5 (363-580)||(14634415-14634632)
chr5 (303-425)||(35667553-35667675)
chr5 (452-555)||(10540577-10540680)
chr5 (300-423)||(10540381-10540504)
chr5 (300-423)||(26362991-26363114)
chr5 (376-558)||(35667379-35667553)
chr5 (379-555)||(26363119-26363283)
chr5 (300-420)||(9888916-9889036)
chr5 (312-420)||(16049041-16049150)
chr5 (300-420)||(23928073-23928194)
chr5 (323-423)||(34696660-34696763)
chr5 (453-580)||(34696842-34696962)
chr5 (312-420)||(29289613-29289724)
chr5 (17-112)||(40484321-40484415)
chr5 (300-362)||(14634096-14634158)
chr5 (23-112)||(14633802-14633891)
chr5 (312-423)||(41359154-41359273)
chr5 (312-432)||(7871403-7871523)
chr5 (478-570)||(41359370-41359462)
chr5 (140-229)||(14633932-14634024)
chr5 (28-112)||(34696335-34696419)
chr5 (312-439)||(425971-426098)
chr5 (17-112)||(9889241-9889336)
chr5 (17-112)||(23928401-23928496)
chr5 (312-390)||(7945380-7945458)
chr5 (42-112)||(10540102-10540172)
chr5 (329-394)||(34319617-34319682)
chr5 (312-392)||(27028762-27028842)
chr5 (375-438)||(34696764-34696825)
chr5 (140-184)||(40484457-40484501)
chr5 (375-439)||(41359274-41359338)
chr5 (379-434)||(10540509-10540564)
chr5 (312-390)||(35606156-35606234)
chr5 (517-570)||(6010591-6010644)
chr5 (158-226)||(10540230-10540299)
chr5 (312-432)||(38437477-38437597)
chr5 (329-396)||(4421588-4421655)
chr5 (25-112)||(26362666-26362753)
chr5 (167-229)||(34696498-34696561)
chr5 (17-112)||(35667890-35667985)
chr5 (468-514)||(9888854-9888900)
chr5 (468-514)||(29289551-29289597)
chr5 (167-229)||(35667762-35667824)
chr5 (517-558)||(4421711-4421752)
[»] chr3 (36 HSPs)
chr3 (300-439)||(45222677-45222816)
chr3 (379-553)||(52498428-52498596)
chr3 (452-555)||(53592763-53592866)
chr3 (17-229)||(45222380-45222605)
chr3 (312-423)||(52498601-52498712)
chr3 (301-423)||(53592569-53592690)
chr3 (300-420)||(4774180-4774301)
chr3 (300-420)||(12025918-12026039)
chr3 (312-439)||(15042265-15042392)
chr3 (300-420)||(39085080-39085202)
chr3 (312-393)||(25109312-25109393)
chr3 (312-420)||(48432901-48433014)
chr3 (313-422)||(26829364-26829473)
chr3 (312-439)||(19280688-19280815)
chr3 (312-439)||(21810733-21810860)
chr3 (312-390)||(7840622-7840700)
chr3 (327-391)||(14609570-14609634)
chr3 (17-112)||(4773878-4773973)
chr3 (25-112)||(52498928-52499015)
chr3 (326-432)||(28700090-28700196)
chr3 (312-390)||(46551929-46552007)
chr3 (329-390)||(41236921-41236982)
chr3 (158-229)||(52498803-52498875)
chr3 (17-112)||(39084779-39084874)
chr3 (468-514)||(26829486-26829532)
chr3 (312-390)||(52965452-52965530)
chr3 (356-425)||(11344372-11344441)
chr3 (379-436)||(53592695-53592752)
chr3 (17-81)||(48432585-48432649)
chr3 (158-229)||(53592417-53592489)
chr3 (502-561)||(21515035-21515094)
chr3 (42-105)||(53592296-53592359)
chr3 (468-514)||(4774317-4774363)
chr3 (456-510)||(14609479-14609533)
chr3 (468-514)||(39085218-39085264)
chr3 (468-514)||(48433030-48433076)
[»] chr8 (30 HSPs)
chr8 (312-551)||(37674856-37675090)
chr8 (375-548)||(37781276-37781450)
chr8 (312-423)||(37781164-37781275)
chr8 (312-423)||(39918934-39919045)
chr8 (312-420)||(31627816-31627925)
chr8 (349-420)||(232250-232321)
chr8 (349-420)||(708661-708732)
chr8 (349-420)||(745873-745944)
chr8 (349-420)||(869768-869839)
chr8 (300-420)||(33365265-33365386)
chr8 (375-523)||(39919046-39919196)
chr8 (300-420)||(2834-2958)
chr8 (312-387)||(13248396-13248471)
chr8 (17-112)||(27822587-27822682)
chr8 (312-390)||(9995022-9995100)
chr8 (312-390)||(44172437-44172515)
chr8 (338-439)||(14050662-14050763)
chr8 (326-390)||(39330967-39331031)
chr8 (17-112)||(31628139-31628234)
chr8 (361-439)||(21469148-21469226)
chr8 (138-196)||(27822721-27822779)
chr8 (338-429)||(36700729-36700821)
chr8 (371-439)||(36700894-36700962)
chr8 (17-112)||(22342951-22343046)
chr8 (17-112)||(22354611-22354706)
chr8 (17-104)||(37780892-37780979)
chr8 (528-570)||(36701007-36701049)
chr8 (517-570)||(13248536-13248589)
chr8 (468-514)||(2772-2818)
chr8 (468-514)||(31627754-31627800)
[»] chr6 (33 HSPs)
chr6 (312-514)||(31834131-31834327)
chr6 (375-553)||(11172522-11172705)
chr6 (312-423)||(17436862-17436973)
chr6 (303-425)||(18999523-18999645)
chr6 (376-580)||(18999325-18999523)
chr6 (325-432)||(6940324-6940431)
chr6 (300-420)||(3100887-3101008)
chr6 (300-420)||(30125461-30125581)
chr6 (300-420)||(8770279-8770400)
chr6 (453-555)||(17436675-17436779)
chr6 (327-400)||(11172430-11172503)
chr6 (17-112)||(30125787-30125882)
chr6 (327-439)||(23770505-23770615)
chr6 (17-110)||(17437190-17437283)
chr6 (466-558)||(31135820-31135912)
chr6 (140-229)||(17437064-17437154)
chr6 (325-412)||(31135714-31135800)
chr6 (375-438)||(17436796-17436861)
chr6 (354-396)||(31261471-31261513)
chr6 (23-112)||(8769985-8770074)
chr6 (502-558)||(23770639-23770695)
chr6 (17-112)||(3100586-3100681)
chr6 (503-570)||(6940463-6940530)
chr6 (609-648)||(6941462-6941501)
chr6 (312-390)||(9606236-9606315)
chr6 (156-211)||(11172263-11172318)
chr6 (158-229)||(18999732-18999803)
chr6 (17-96)||(31834559-31834638)
chr6 (156-226)||(6940146-6940215)
chr6 (468-514)||(8770416-8770462)
chr6 (17-70)||(6939987-6940040)
chr6 (19-96)||(13601192-13601269)
chr6 (17-66)||(18999905-18999954)
[»] chr4 (33 HSPs)
chr4 (376-577)||(890390-890587)
chr4 (303-425)||(890587-890709)
chr4 (379-551)||(43342543-43342709)
chr4 (300-420)||(23723187-23723307)
chr4 (312-423)||(28043803-28043914)
chr4 (300-423)||(43342714-43342837)
chr4 (300-420)||(32951424-32951545)
chr4 (312-420)||(42547366-42547475)
chr4 (312-420)||(27925424-27925533)
chr4 (452-555)||(28043988-28044085)
chr4 (312-390)||(9958662-9958740)
chr4 (17-112)||(23722886-23722981)
chr4 (19-110)||(26688381-26688472)
chr4 (312-390)||(16821817-16821895)
chr4 (25-110)||(43343042-43343127)
chr4 (158-229)||(43342916-43342988)
chr4 (315-390)||(30543978-30544053)
chr4 (468-514)||(27925362-27925408)
chr4 (312-390)||(41477781-41477859)
chr4 (313-390)||(28984248-28984325)
chr4 (609-650)||(54578358-54578399)
chr4 (17-85)||(26071038-26071106)
chr4 (17-112)||(42547052-42547148)
chr4 (158-229)||(890796-890867)
chr4 (17-112)||(7474326-7474421)
chr4 (312-383)||(23185148-23185219)
chr4 (19-110)||(24221802-24221893)
chr4 (468-514)||(23723323-23723369)
chr4 (312-390)||(24221508-24221586)
chr4 (468-514)||(32951362-32951408)
chr4 (468-514)||(42547491-42547537)
chr4 (25-66)||(890969-891010)
chr4 (379-437)||(28043919-28043979)
[»] chr2 (38 HSPs)
chr2 (375-558)||(27451176-27451358)
chr2 (312-425)||(8423513-8423626)
chr2 (300-423)||(27451359-27451482)
chr2 (312-439)||(5708444-5708571)
chr2 (452-558)||(8423338-8423442)
chr2 (347-432)||(16749680-16749765)
chr2 (300-420)||(22416799-22416921)
chr2 (300-438)||(17473977-17474114)
chr2 (312-420)||(34899533-34899642)
chr2 (461-558)||(8371480-8371575)
chr2 (312-420)||(30357103-30357212)
chr2 (300-420)||(37575726-37575847)
chr2 (461-558)||(17474105-17474198)
chr2 (312-390)||(36441614-36441692)
chr2 (17-105)||(27451696-27451784)
chr2 (312-390)||(17205958-17206036)
chr2 (17-112)||(8423852-8423947)
chr2 (17-110)||(17473669-17473760)
chr2 (312-394)||(19205914-19205996)
chr2 (326-432)||(40332915-40333021)
chr2 (326-390)||(18890934-18890998)
chr2 (326-390)||(20564949-20565013)
chr2 (496-551)||(16749791-16749846)
chr2 (140-229)||(27451561-27451649)
chr2 (17-112)||(30357430-30357525)
chr2 (17-112)||(34899218-34899313)
chr2 (312-392)||(28606457-28606537)
chr2 (17-112)||(22416498-22416593)
chr2 (17-63)||(8371571-8371617)
chr2 (167-229)||(8423722-8423784)
chr2 (312-390)||(13369494-13369572)
chr2 (468-514)||(22416937-22416983)
chr2 (468-514)||(30357041-30357087)
chr2 (468-514)||(34899658-34899704)
chr2 (468-514)||(37575664-37575710)
chr2 (376-437)||(8423452-8423513)
chr2 (23-100)||(18765142-18765219)
chr2 (312-377)||(18765445-18765510)
[»] chr1 (61 HSPs)
chr1 (300-420)||(39330853-39330973)
chr1 (452-558)||(39330669-39330775)
chr1 (452-552)||(38035979-38036079)
chr1 (300-423)||(38036160-38036283)
chr1 (300-438)||(15836848-15836985)
chr1 (300-420)||(14795702-14795822)
chr1 (300-420)||(14804576-14804696)
chr1 (312-420)||(21968992-21969101)
chr1 (312-420)||(40709820-40709929)
chr1 (300-423)||(14293620-14293746)
chr1 (312-420)||(29030757-29030865)
chr1 (300-420)||(19584770-19584893)
chr1 (301-420)||(51250969-51251090)
chr1 (312-420)||(8059279-8059390)
chr1 (375-490)||(14293508-14293619)
chr1 (300-420)||(31200286-31200410)
chr1 (312-412)||(19864544-19864644)
chr1 (312-420)||(50050075-50050185)
chr1 (312-392)||(10789089-10789169)
chr1 (17-105)||(21969326-21969414)
chr1 (25-80)||(220557-220612)
chr1 (301-390)||(43313048-43313137)
chr1 (496-584)||(15837043-15837131)
chr1 (325-393)||(21258037-21258105)
chr1 (17-105)||(38036500-38036588)
chr1 (312-392)||(39783295-39783375)
chr1 (345-432)||(13488904-13488991)
chr1 (17-112)||(14796015-14796110)
chr1 (17-112)||(14804889-14804984)
chr1 (312-390)||(1246549-1246627)
chr1 (312-390)||(14190208-14190286)
chr1 (38-112)||(14293967-14294041)
chr1 (468-514)||(29030881-29030927)
chr1 (312-386)||(40228758-40228832)
chr1 (19-104)||(15836546-15836631)
chr1 (312-388)||(7145860-7145936)
chr1 (17-81)||(8059639-8059703)
chr1 (312-388)||(30806710-30806786)
chr1 (312-439)||(13705796-13705923)
chr1 (376-439)||(15573244-15573307)
chr1 (140-229)||(15836681-15836769)
chr1 (17-112)||(19584469-19584564)
chr1 (312-390)||(14939717-14939795)
chr1 (312-390)||(14944961-14945039)
chr1 (312-390)||(14949724-14949802)
chr1 (312-390)||(28251231-28251309)
chr1 (312-390)||(32829699-32829777)
chr1 (326-390)||(19263801-19263865)
chr1 (167-229)||(38036361-38036424)
chr1 (25-112)||(39331182-39331269)
chr1 (41-112)||(40710149-40710220)
chr1 (17-80)||(50050386-50050449)
chr1 (468-514)||(14795640-14795686)
chr1 (468-514)||(14804514-14804560)
chr1 (468-514)||(19584909-19584955)
chr1 (468-514)||(31200426-31200472)
chr1 (476-514)||(40709758-40709796)
chr1 (17-111)||(51250669-51250763)
chr1 (468-514)||(51251106-51251152)
chr1 (517-570)||(19263686-19263739)
chr1 (19-108)||(32829396-32829485)
[»] scaffold0123 (3 HSPs)
scaffold0123 (375-555)||(26857-27040)
scaffold0123 (312-423)||(26747-26856)
scaffold0123 (25-112)||(26440-26527)
[»] scaffold0017 (5 HSPs)
scaffold0017 (312-423)||(28375-28487)
scaffold0017 (375-511)||(28239-28374)
scaffold0017 (17-105)||(28735-28823)
scaffold0017 (167-229)||(28590-28653)
scaffold0017 (516-553)||(28209-28246)
[»] scaffold0001 (3 HSPs)
scaffold0001 (312-420)||(397203-397312)
scaffold0001 (17-112)||(396890-396985)
scaffold0001 (468-514)||(397328-397374)
[»] scaffold0004 (1 HSPs)
scaffold0004 (312-387)||(245573-245649)
[»] scaffold1763 (1 HSPs)
scaffold1763 (345-412)||(968-1035)
[»] scaffold0688 (2 HSPs)
scaffold0688 (19-110)||(2748-2839)
scaffold0688 (19-110)||(4415-4506)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 300 - 584
Target Start/End: Original strand, 32538337 - 32538616
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32538337 gttggatgatgtaaaattgcgttaacatcaaaataattaaaaagtgcagcatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 32538436  T
Q  400 ttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttgttattctccttcttccctatg 499  Q
    ||||||||||||||||||||| ||||||||||||||||              ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32538437 ttatgtcaattttagaaattatacatgatttataacca-----tttttttttaaagaaagattataaccaaaacctttgttattctccttcctccctatg 32538531  T
Q  500 aaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgttttatcaaaaatccatta 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||||| |||||| ||||||    
T  32538532 aaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgggtctgattttaccaaaaacccatta 32538616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 300 - 548
Target Start/End: Complemental strand, 37632881 - 37632634
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37632881 gttggatgatgtaaaattgcgttaacttcaaaataattaaaaagtgaaacatcataatttgtaactctaacatgttttgattttcaatatagaggatgtg 37632782  T
Q  400 ttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttgttattctccttcttccctatg 499  Q
    |||||||||||||| |||||||||||||||||||||||||            | ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  37632781 ttatgtcaattttaaaaattagacatgatttataaccaaa-actttttttttatagaaagattataaccaaaacctttgttcttctccttcctccctatg 37632683  T
Q  500 aaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagttt 548  Q
    |||||| |||||||| |||||||||||||||| || |||||||| ||||    
T  37632682 aaaatgtaaataaaaataaaaatatgaatattttttggtaagtgggttt 37632634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 32538040 - 32538265
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttg-----ggttggg 111  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||| ||||||     | |||||    
T  32538040 atatagggtactccggtttgagtgaggtaaaatgtccacccattatattaatgggtgagtttggacaaatccactagttttcggtttgttttagattggg 32538139  T
Q  112 tct--------ccaaattaattttctannnnnnngataatattaaatgactagagtcctcatattttttctcacaaaaattactgaacattttattttct 203  Q
    |          |||||||||||||||        | ||||||||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||    
T  32538140 tagtgggttacccaaattaattttctgttattttggtaatattaaatgactagagtcctcatattttttctcataaaaattactaagctttttattttct 32538239  T
Q  204 ttcaaaaattgtgtaatctatttcac 229  Q
    ||||||||||||||||||||||||||    
T  32538240 ttcaaaaattgtgtaatctatttcac 32538265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 375 - 555
Target Start/End: Complemental strand, 3407575 - 3407401
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 474  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||| |||||||||||||              ||||||||||||||||||||||     
T  3407575 tttgattttcaatatagaggatttgttgtgtcaatttttgaaattagacttgatttataacca------ttatttttaaagaaagattataaccaaaacg 3407482  T
Q  475 tttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggt 555  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||| | |||||| |||||||||||    
T  3407481 tttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaaaattattcgataagtgggtttattgggt 3407401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 380 - 555
Target Start/End: Original strand, 28363241 - 28363412
Alignment:
Q  380 ttttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttgt 479  Q
    |||| |||||||||||| |||| |||||||||| |||||||||| ||||||||||||||             |||||||||||||||||| ||||||||     
T  28363241 tttttaatatagaggatttgttgtgtcaatttttgaaattagacttgatttataaccaa----tttttttttaaagaaagattataaccataacctttga 28363336  T
Q  480 tattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggt 555  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||||    
T  28363337 tattctccttcgtccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttattgggt 28363412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 452 - 583
Target Start/End: Original strand, 3937272 - 3937403
Alignment:
Q  452 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 551  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||    
T  3937272 aaagaaagattataactaaaacatttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttatt 3937371  T
Q  552 gggtttgaatctcgttttatcaaaaatccatt 583  Q
    |||| ||| ||| |||||| | |||| |||||    
T  3937372 gggtatgagtcttgttttacccaaaacccatt 3937403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 301 - 423
Target Start/End: Original strand, 44959537 - 44959659
Alignment:
Q  301 ttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgt 400  Q
    |||||||| | |||||| | ||||||||||||||| ||||||| |||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  44959537 ttggatgacgtaaaatttctttaacatcaaaataactaaaaagtgcaacaacaaaatttgtaactataacatgttttgattttcaatatagaggatgtgt 44959636  T
Q  401 tatgtcaattttagaaattagac 423  Q
    | |||||||||||||||||||||    
T  44959637 tgtgtcaattttagaaattagac 44959659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 312 - 423
Target Start/End: Complemental strand, 3407687 - 3407576
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||||||| |||| || ||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||    
T  3407687 aaaattgctttaacataaaaaaaactaaaaagtgcaacatcataatttgtaactataacacgttttgattttcaatatagaggatgtgttgtgtcaattt 3407588  T
Q  412 tagaaattagac 423  Q
    ||||||||||||    
T  3407587 tagaaattagac 3407576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 16279523 - 16279634
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||||||||||||||| |||||||  |||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||| | |||||||    
T  16279523 aaaattgctttaacatcaaaataactaaaaagtacaacatcataatttataactataacatgttttgattttcaatatagatgatgtgttgtatcaattt 16279622  T
Q  412 tagaaattagac 423  Q
    ||||||||||||    
T  16279623 tagaaattagac 16279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 300 - 417
Target Start/End: Original strand, 3936892 - 3937010
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagg-gcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgt 398  Q
    ||||||||| | |||||||| |||||||| |||||| |||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  3936892 gttggatgacgtaaaattgctttaacatccaaataactaaaaaagtgcaacatcataatttgtaactataacatgttttgattttcaatatagaggatgt 3936991  T
Q  399 gttatgtcaattttagaaa 417  Q
     || |||||| ||||||||    
T  3936992 attgtgtcaactttagaaa 3937010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 40210398 - 40210276
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaata--tgttttgattttcaatatagaggatg 397  Q
    ||||||||||| |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||  | |||| ||||||||||||||||||     
T  40210398 gttggatgatgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttttattttcaatatagaggata 40210299  T
Q  398 tgttatgtcaattttagaaatta 420  Q
    |||| ||||||||||||||||||    
T  40210298 tgttgtgtcaattttagaaatta 40210276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 37633180 - 37632953
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgg-----gttggg 111  Q
    |||||||||| ||||||||  |||||||| |||||||||| |||||||||||||||||||||||  ||| ||| ||||||| |||||||     ||||||    
T  37633180 atatagggtattccggtttgggtgaggtagaatgtccacctattatattaatgggtgagtttggacaaacccactagttttcggtttggttttggttggg 37633081  T
Q  112 tct--------ccaaattaattttctannnnnnngataatattaaatgactagagtcctcatatttttt--ctcacaaaaattactgaacattttatttt 201  Q
    |          |||||||| ||||||         ||||||||||||||||| ||||||||||||||||  |||| |||||||||| ||| |||||||||    
T  37633080 tagtgggttacccaaattatttttctgttttttttataatattaaatgactacagtcctcatattttttttctcataaaaattactcaactttttatttt 37632981  T
Q  202 ctttcaaaaattgtgtaatctatttcac 229  Q
    |||  |||||||||||||||||||||||    
T  37632980 cttaaaaaaattgtgtaatctatttcac 37632953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 24954613 - 24954722
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  24954613 aaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatatagaggatgtgttgtgtcaatt 24954712  T
Q  411 ttagaaatta 420  Q
    ||||||||||    
T  24954713 ttagaaatta 24954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 462 - 555
Target Start/End: Original strand, 16279754 - 16279847
Alignment:
Q  462 tataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggt 555  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||  ||| |||||||||||| |||||||| |||||| ||||| |||||    
T  16279754 tataaccaaaacctttgttattctccttcctccctgtgaaaatgaaaacgaaaataaaaatatgaacattattggataagtgggtttaatgggt 16279847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 36107424 - 36107535
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg---attttcaatatagaggatgtgttatgtcaa 408  Q
    |||||||| ||| ||||||  ||| || |||  |||||||||||||||||||||||||||| ||||    ||||||||||||||||||||||||||||||    
T  36107424 aaaattgctttagcatcaatgtaactataaattgcaacatcataatttgtaactctaatatttttttttaattttcaatatagaggatgtgttatgtcaa 36107523  T
Q  409 ttttagaaatta 420  Q
    ||||||||||||    
T  36107524 ttttagaaatta 36107535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 41987080 - 41987189
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgat-tttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| ||| ||||||||||| || |||  |||||||||||||||||||||||||| | ||||  | ||||||||||||||||||||| ||||||||    
T  41987080 aaaattgctttagcatcaaaataactataaattgcaacatcataatttgtaactctaatttttttttttctttcaatatagaggatgtgttgtgtcaatt 41987179  T
Q  411 ttagaaatta 420  Q
    ||||||||||    
T  41987180 ttagaaatta 41987189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 663 - 751
Target Start/End: Original strand, 32538687 - 32538770
Alignment:
Q  663 ataggtttgacggattttttgagttgacccaacccatttacatctctaccctaccctgaactttataatttagtatccccaacaacaac 751  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||      ||||||||||||||||||||||||||||||||    
T  32538687 ataggtttgacgggttttttgagttgacccaacccatatacatctctacccc-----gaactttataatttagtatccccaacaacaac 32538770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 339 - 439
Target Start/End: Original strand, 25981358 - 25981458
Alignment:
Q  339 aaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaa 438  Q
    ||||| ||||||||  ||||||||| ||||| ||||||||||||||||||||||| |||  || ||||||||||| ||||||||| |||||||| |||||    
T  25981358 aaaagtgcaacatccgaatttgtaattctaacatgttttgattttcaatatagagaatgctttttgtcaattttaaaaattagacttgatttatgaccaa 25981457  T
Q  439 a 439  Q
    |    
T  25981458 a 25981458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 375 - 552
Target Start/End: Original strand, 44959660 - 44959832
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 474  Q
    |||||||||||||||||||||| | |  |||||||||| |||||||||| ||||||||||||||             |||||||||||||||||||||||    
T  44959660 tttgattttcaatatagaggatctatg-tgtcaatttttgaaattagacttgatttataaccaa--tttttttttttaaagaaagattataaccaaaacc 44959756  T
Q  475 tttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattg 552  Q
    |||||||||||||||| ||  | |||||||||||||  || ||||||||  || | |||| |||||||| ||||||||    
T  44959757 tttgttattctccttcctctttgtgaaaatgaaaat--aattaaaaatagaaacaatatttggtaagtgggtttattg 44959832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 44524225 - 44524147
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||| |||||| |||||||  ||||||||||||||| |||||||||||||||| ||||    
T  44524225 aaaattgcattagtatcaaaataatcaaaaagtgcaacatattaatttgtaactctagtatgttttgattttcattata 44524147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 49105668 - 49105590
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||  |||||| |||||||  ||||||||||||||| |||||||||||||||||||||    
T  49105668 aaaattgcattagtatcaaaataacaaaaaagtgcaacatattaatttgtaactctagtatgttttgattttcaatata 49105590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 300 - 398
Target Start/End: Complemental strand, 33438884 - 33438785
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaata-tgttttgattttcaatatagaggatgt 398  Q
    ||||||||| | |||||||| ||| ||||||| ||| || |||  |||||||||| |||| ||||||||||| | |||| ||||||||||||||||||||    
T  33438884 gttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcatcatttataactctaatattttttttattttcaatatagaggatgt 33438785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 36107107 - 36107202
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||  ||||||| ||||||    
T  36107107 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttggtttgggt 36107202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 44959228 - 44959323
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    ||||||| |||||||||||  ||||||||||| |||||||  ||||||||| ||||| ||||| | ||| ||| ||||||  ||||||||||||||    
T  44959228 atataggatactccggtttgggtgaggtaaaacgtccacctgttatattaaggggtgggtttgagcaaacccaatagtttccggtttgggttgggt 44959323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 356 - 422
Target Start/End: Original strand, 33130705 - 33130771
Alignment:
Q  356 atttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattaga 422  Q
    |||||||||||||| ||||| |||||||||||||||| ||||| || || ||||||| |||||||||    
T  33130705 atttgtaactctaacatgttatgattttcaatatagatgatgtcttgtgccaatttttgaaattaga 33130771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 40210698 - 40210603
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  ||  |||||||| | ||||| ||| ||||||||||| ||||||| ||| ||| || |||| ||||||| ||||||    
T  40210698 atatagggtactccggtttgggtttggtaaaatattcacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttggtttgggt 40210603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 437
Target Start/End: Original strand, 16279635 - 16279697
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataacca 437  Q
    ||||||||||||| | |||||| |||| |||||||||| | |||||||| |||||||||||||    
T  16279635 tttgattttcaatgtcgaggatttgttgtgtcaatttttgtaattagacttgatttataacca 16279697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 418
Target Start/End: Complemental strand, 23807442 - 23807336
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||  |||||||||||||||  ||||||  ||| ||| |||||| ||||| ||  |||||||||||||| ||||| || |||| || |||||||||    
T  23807442 aaaattgtattaacatcaaaataaccaaaaagtacaatatcctaatttttaactttagcatgttttgattttcgatataaagaatgtcttgtgtcaattt 23807343  T
Q  412 tagaaat 418  Q
    | |||||    
T  23807342 tggaaat 23807336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 37452425 - 37452363
Alignment:
Q  326 atcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaata 388  Q
    ||||||||||| |||||| |||||||  ||||||||||||||| |||||||| ||||| ||||    
T  37452425 atcaaaataataaaaaagtgcaacatattaatttgtaactctagtatgttttaatttttaata 37452363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 41987205 - 41987251
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||    
T  41987205 caaaacatttgttattcttcttcttccctatgaaaatgaaattaaaa 41987251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 24685319 - 24685370
Alignment:
Q  339 aaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    ||||| |||||||| | |||||||||||||  ||||||||||||||||||||    
T  24685319 aaaagtgcaacatcttgatttgtaactctataatgttttgattttcaatata 24685370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 24954297 - 24954392
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    ||||| |||||||||||||   | ||||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||  ||||||| ||||||    
T  24954297 atataaggtactccggtttggattaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttggtttgggt 24954392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 37405126 - 37405161
Alignment:
Q  355 aatttgtaactctaatatgttttgattttcaatata 390  Q
    ||||||||||||||| ||||||||||||||||||||    
T  37405126 aatttgtaactctaacatgttttgattttcaatata 37405161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 432
Target Start/End: Original strand, 12342258 - 12342332
Alignment:
Q  358 ttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttat 432  Q
    ||||||||  |||||||||||||||| |||||| || |||  || ||||||||||| |||||| || ||||||||    
T  12342258 ttgtaactaaaatatgttttgattttgaatataaagaatgccttttgtcaattttaaaaattaaacttgatttat 12342332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 36107551 - 36107597
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  36107551 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 36107597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 572
Target Start/End: Complemental strand, 37451977 - 37451923
Alignment:
Q  518 aaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgttttatc 572  Q
    ||||||| || ||||||| ||||||| |||| |||||||||||||| ||||||||    
T  37451977 aaaatattaacattattgagtaagtgggttttttgggtttgaatctggttttatc 37451923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 40210260 - 40210214
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  40210260 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 40210214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 10461664 - 10461627
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtcca 54  Q
    |||||||||||||||||||  |||||||||||||||||    
T  10461664 atatagggtactccggtttgggtgaggtaaaatgtcca 10461627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 16279220 - 16279273
Alignment:
Q  28 tccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttggg 81  Q
    ||||||||  ||||||||||| || ||||  |||||||||||||||||||||||    
T  16279220 tccggtttgggtgaggtaaaacgttcacctgttatattaatgggtgagtttggg 16279273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 704
Target Start/End: Complemental strand, 37632525 - 37632488
Alignment:
Q  667 gtttgacggattttttgagttgacccaacccatttaca 704  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  37632525 gtttgacggattttttgggttgacccaacccatataca 37632488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 2e-88; HSPs: 45)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 300 - 570
Target Start/End: Original strand, 40484590 - 40484867
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40484590 gttggatgatgtaaaattgcgttaacatcaaaataattaaaaagtgcaacatcataatttgtaactctaagatgttttgattttcaatatagaggatgtg 40484689  T
Q  400 ttatgtcaattttagaaattagacatgatttataacc-aaacnnnnnnnnnnnaaagaaagattataaccaaaacctttgttattctccttcttccctat 498  Q
    |||||||||||||||||||||||| |||||||||||| ||||           ||||||||||||||||||||||||||||| ||||||||| | |||||    
T  40484690 ttatgtcaattttagaaattagacttgatttataaccaaaactttttttttttaaagaaagattataaccaaaacctttgttcttctccttccttcctat 40484789  T
Q  499 gaaaatg------aaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgtttta 570  Q
    |||||||      ||||||||| |||||||||||||||||||||||||||  ||||||||||||||| ||| ||||||    
T  40484790 gaaaatgaaaataaaaataaaaataaaaatatgaatattattgggtaagtaggtttattgggtttgagtctagtttta 40484867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 363 - 580
Target Start/End: Original strand, 14634415 - 14634632
Alignment:
Q  363 actctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagatt 462  Q
    ||||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||            |||||||||||    
T  14634415 actctaacatattttgattttcaatataaatgatgtgttatgtcaattttagaaattagacttgatttataaccaaaactttttttttaaaagaaagatt 14634514  T
Q  463 ataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatc 562  Q
    ||||| |||||||||||| ||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  14634515 ataactaaaacctttgttcttctccttcctccccatgaaaatgaaaataaaaataaaaatatgaatattgttgggtaagtgggtttattgggtttgagtc 14634614  T
Q  563 tcgttttatcaaaaatcc 580  Q
    | |||||| | |||||||    
T  14634615 tagttttacccaaaatcc 14634632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 303 - 425
Target Start/End: Complemental strand, 35667675 - 35667553
Alignment:
Q  303 ggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgtta 402  Q
    |||||| | |||||||| ||||| ||||||||| |||||||  |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||     
T  35667675 ggatgacgtaaaattgctttaacttcaaaataactaaaaagttcaacatcataatttgtaactctaacatgtttttattttcaatatagaggatgtgttg 35667576  T
Q  403 tgtcaattttagaaattagacat 425  Q
    |||||||||||||||||||||||    
T  35667575 tgtcaattttagaaattagacat 35667553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 452 - 555
Target Start/End: Original strand, 10540577 - 10540680
Alignment:
Q  452 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 551  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||    
T  10540577 aaagaaagattataaccaaaatctttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttatt 10540676  T
Q  552 gggt 555  Q
    ||||    
T  10540677 gggt 10540680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 300 - 423
Target Start/End: Original strand, 10540381 - 10540504
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||| |||| ||||||||||| |||| ||  |||||||||||||||||||||||||||||    
T  10540381 gttggatgacgtaaaattgctttaacatcaaaataactaaaaagtgcaagatcataatttgcaactatatcatgttttgattttcaatatagaggatgtg 10540480  T
Q  400 ttatgtcaattttagaaattagac 423  Q
    || ||||||||||| |||||||||    
T  10540481 ttgtgtcaattttaaaaattagac 10540504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 300 - 423
Target Start/End: Original strand, 26362991 - 26363114
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||| |||| ||||||||||| |||| ||  |||||||||||||||||||||||||||||    
T  26362991 gttggatgacgtaaaattgctttaacatcaaaataactaaaaagtgcaagatcataatttgcaactatatcatgttttgattttcaatatagaggatgtg 26363090  T
Q  400 ttatgtcaattttagaaattagac 423  Q
    || ||||||||| |||||||||||    
T  26363091 ttttgtcaatttaagaaattagac 26363114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 376 - 558
Target Start/End: Complemental strand, 35667553 - 35667379
Alignment:
Q  376 ttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacct 475  Q
    ||||||||||||||||||||| | || |||||| |||||||||||||| |||||||||||||              ||||||||||||||||||||| ||    
T  35667553 ttgattttcaatatagaggatttattgtgtcaaatttagaaattagacttgatttataacca-----ttttattttaaagaaagattataaccaaaagct 35667459  T
Q  476 ttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 558  Q
    ||||||||||||||| |||||||| |||||||||| ||   ||||| ||||| ||||||||||||||| ||||||||||||||    
T  35667458 ttgttattctccttcctccctatgtaaatgaaaatgaa---aaaaaaatgaacattattgggtaagtgggtttattgggtttg 35667379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 379 - 555
Target Start/End: Original strand, 26363119 - 26363283
Alignment:
Q  379 attttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttg 478  Q
    |||||||||||||||||| |||| ||| |||||| |||||||||| |||||||||||||              |||||||||||||||||||||  ||||    
T  26363119 attttcaatatagaggatttgttgtgttaatttttgaaattagacttgatttataacca------ttttatttaaagaaagattataaccaaaatttttg 26363212  T
Q  479 ttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggt 555  Q
    |||||||||||| ||||||||||||||||||      |||||||||||| |||||||||||||||||||||||||||    
T  26363213 ttattctccttcctccctatgaaaatgaaaa------taaaaatatgaacattattgggtaagtgagtttattgggt 26363283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 9889036 - 9888916
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||| | |||||||| ||| ||| ||| ||| || |||  |||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  9889036 gttggatgacgtaaaattgctttagcataaaagtaactataaattgcaacatcataatttgtaactctaatatttttttattttcaatatagaggatgtg 9888937  T
Q  400 ttatgtcaattttagaaatta 420  Q
    || ||||||||||||||||||    
T  9888936 ttgtgtcaattttagaaatta 9888916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 16049041 - 16049150
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  16049041 aaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatatagaggatgtgttgtgtcaatt 16049140  T
Q  411 ttagaaatta 420  Q
    ||||||||||    
T  16049141 ttagaaatta 16049150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 23928194 - 23928073
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgt 398  Q
    ||||||||| | |||||||  ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  23928194 gttggatgacgtaaaattgatttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatcttttttattttcaatatagaggatgt 23928095  T
Q  399 gttatgtcaattttagaaatta 420  Q
    | | ||||||||||||||||||    
T  23928094 ggtgtgtcaattttagaaatta 23928073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 323 - 423
Target Start/End: Original strand, 34696660 - 34696763
Alignment:
Q  323 aacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatat---agaggatgtgttatgtcaattttagaaatt 419  Q
    ||||||||||||| ||||||| |||| |||||||||||||||| ||| || ||||||||||||||||   ||| |||||||| |||||||||||||||||    
T  34696660 aacatcaaaataactaaaaagtgcaagatcataatttgtaactataacatattttgattttcaatatagaagaagatgtgttgtgtcaattttagaaatt 34696759  T
Q  420 agac 423  Q
    ||||    
T  34696760 agac 34696763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 453 - 580
Target Start/End: Original strand, 34696842 - 34696962
Alignment:
Q  453 aagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattg 552  Q
    |||||||||||||||||||||||||||||||||||||| | | | ||||||||||||      ||||||||| || ||||||||||||||||||||||||    
T  34696842 aagaaagattataaccaaaacctttgttattctccttcct-cttgtgaaaatgaaaa------taaaaatattaacattattgggtaagtgagtttattg 34696934  T
Q  553 ggtttgaatctcgttttatcaaaaatcc 580  Q
    | |||| |||| |||||| | |||||||    
T  34696935 gatttggatctggttttacccaaaatcc 34696962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 312 - 420
Target Start/End: Complemental strand, 29289724 - 29289613
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg---attttcaatatagaggatgtgttatgtcaa 408  Q
    |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||    ||||||||||||||||||||||| ||| ||    
T  29289724 aaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttatttattttcaatatagaggatgtgttgtgttaa 29289625  T
Q  409 ttttagaaatta 420  Q
    ||||||||||||    
T  29289624 ttttagaaatta 29289613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 40484321 - 40484415
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||||||| ||||||| ||| | | ||||||| ||||||| ||||||    
T  40484321 atatagggtactccggtttgggtgaggtaaaatgtccacccatta-attaatgggtgggtttgggcaaaccaactagttttcggtttggtttgggt 40484415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 14634096 - 14634158
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgta 362  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  14634096 gttggatgatgtaaaattgcgttaacatcaaaataattaaaaagtgcaacatcataacttgta 14634158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 14633802 - 14633891
Alignment:
Q  23 ggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||||| || |||| ||||||| || |||| ||||||| ||||||    
T  14633802 ggtactccggtttgggtgaggtaaaatgtccatccattatattaatgggtgggtatgggcaaatccactaattttcggtttggtttgggt 14633891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 41359154 - 41359273
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactcta-----ata---tgttttgattttcaatatagaggatgtgttat 403  Q
    |||||| | ||||||||||||||| ||||||| |||| |||||||||||||||| ||     |||   | |||||||||||||||||||||||||||| |    
T  41359154 aaaattactttaacatcaaaataactaaaaagtgcaatatcataatttgtaactatataagtatagcatattttgattttcaatatagaggatgtgtttt 41359253  T
Q  404 gtcaattttagaaattagac 423  Q
    ||| ||||||||||||||||    
T  41359254 gtctattttagaaattagac 41359273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 312 - 432
Target Start/End: Original strand, 7871403 - 7871523
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||||||| |||| ||  |||||  ||||||||  | |||||||||||| |||||||||| ||||||||||| | |||| || |||||||||    
T  7871403 aaaattgcattaacattaaaacaaccaaaaattgcaacatctgattttgtaactctagtatgttttgaatttcaatatagcgaatgtcttttgtcaattt 7871502  T
Q  412 tagaaattagacatgatttat 432  Q
    || ||||||||| ||||||||    
T  7871503 taaaaattagacttgatttat 7871523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 478 - 570
Target Start/End: Original strand, 41359370 - 41359462
Alignment:
Q  478 gttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgtttta 570  Q
    ||||||||| ||| ||||||||||||||||||||||| |  ||||||||||||||| ||| || || ||||||||||| ||| ||| ||||||    
T  41359370 gttattctctttcctccctatgaaaatgaaaataaaaatgtaaatatgaatattatcgggaaaatgggtttattgggtatgagtctggtttta 41359462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 14633932 - 14634024
Alignment:
Q  140 taatattaaatgactagagtcctcatattttttctcacaaaaattactgaacattttattttctt---tcaaaaattgtgtaatctatttcac 229  Q
    |||||||||||||||| |||||||||||||||||||| |||  | ||| ||| ||||||||||||     |||||||||||||||||||||||    
T  14633932 taatattaaatgactaaagtcctcatattttttctcataaatttcactcaactttttattttcttaaaaaaaaaattgtgtaatctatttcac 14634024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 34696335 - 34696419
Alignment:
Q  28 tccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    ||||||||  |||||||||||||||||||| |||||||||| |||| ||||||  ||| ||| ||||||  ||||||||||||||    
T  34696335 tccggtttgggtgaggtaaaatgtccacccgttatattaataggtgggtttggacaaacccactagtttccggtttgggttgggt 34696419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 439
Target Start/End: Original strand, 425971 - 426098
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||| |||||||||||  |||||| |||||||| ||||||||||||||   ||| ||| |||||||||||||| ||| | ||  ||||| ||    
T  425971 aaaattgcattagcatcaaaataaccaaaaagtgcaacatcctaatttgtaactctggcatgctttaattttcaatatagatgatatcttgagtcaaatt 426070  T
Q  412 tagaaattagacatgatttataaccaaa 439  Q
    |  |||||| || |||||||| ||||||    
T  426071 tgaaaattatacttgatttatgaccaaa 426098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 9889336 - 9889241
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||  ||||||| ||||||    
T  9889336 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttggtttgggt 9889241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 23928496 - 23928401
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||| ||||||||  || ||||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||| ||||||| ||||||    
T  23928496 atatagggtattccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttggtttgggt 23928401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 7945458 - 7945380
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||  |||||   ||||||| |||||||||||| ||||||||||||||||||||||||    
T  7945458 aaaattgcattagtatcaaaataaccaaaaaatacaacatcttaatttgtaactataatatgttttgattttcaatata 7945380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 10540102 - 10540172
Alignment:
Q  42 ggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    ||||||| ||||| |||||||||||||||||| ||||||| ||| ||| ||||||| ||||||| ||||||    
T  10540102 ggtaaaaagtccaaccattatattaatgggtgggtttgggcaaacccactagttttcggtttggtttgggt 10540172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 329 - 394
Target Start/End: Complemental strand, 34319682 - 34319617
Alignment:
Q  329 aaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagagg 394  Q
    ||||||| ||||||| | |||||| |||||| |||||||| ||||||||| |||||||||||||||    
T  34319682 aaaataactaaaaagtgtaacatcctaatttataactctagtatgttttgcttttcaatatagagg 34319617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 27028762 - 27028842
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatataga 392  Q
    |||||||| ||| |||||||||||  |||||  |||||||| ||||||| |||||||| ||||||  ||||||||||||||    
T  27028762 aaaattgcattagcatcaaaataaccaaaaaatgcaacatcctaatttgaaactctaacatgtttcaattttcaatataga 27028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 438
Target Start/End: Original strand, 34696764 - 34696825
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaa 438  Q
    |||||||||||||||||  ||| |||| |||||||||| |||||||||| ||||||||||||||    
T  34696764 tttgattttcaatatag--gatttgttgtgtcaatttttgaaattagacttgatttataaccaa 34696825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 40484457 - 40484501
Alignment:
Q  140 taatattaaatgactagagtcctcatattttttctcacaaaaatt 184  Q
    ||||||||||||||||||||||||||||||||||| | |||||||    
T  40484457 taatattaaatgactagagtcctcatattttttcttaaaaaaatt 40484501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 41359274 - 41359338
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 439  Q
    |||||||||||||||||| ||| | || ||||||||||  ||||||||| |||||||||||||||    
T  41359274 tttgattttcaatatagatgatttattgtgtcaattttttaaattagacttgatttataaccaaa 41359338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 379 - 434
Target Start/End: Original strand, 10540509 - 10540564
Alignment:
Q  379 attttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataa 434  Q
    |||||||||||||||||| |||| ||||||||||  ||||||||| ||||||||||    
T  10540509 attttcaatatagaggatttgttgtgtcaatttttaaaattagacttgatttataa 10540564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 35606156 - 35606234
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  |||||||||| ||||||| |||||||  |||||| ||||| || ||| |||||||||||||||||    
T  35606156 aaaattgcattagtatcaaaataactaaaaagtgcaacatattaatttataactttagtatattttgattttcaatata 35606234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 6010644 - 6010591
Alignment:
Q  517 aaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgtttta 570  Q
    |||||||| || ||||||||||||||| |||| |||||||||||||| ||||||    
T  6010644 aaaaatattaacattattgggtaagtgggttttttgggtttgaatctggtttta 6010591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 10540230 - 10540299
Alignment:
Q  158 gtcctcatattttttctcacaaaaattactgaacattttattttctt-tcaaaaattgtgtaatctattt 226  Q
    |||||| |||||||||||| |||||||||| ||| ||||||||||||   ||||||||||||| ||||||    
T  10540230 gtcctcgtattttttctcataaaaattactcaactttttattttcttaaaaaaaattgtgtaacctattt 10540299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 432
Target Start/End: Complemental strand, 38437597 - 38437477
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    ||||||||  || ||||| |||||  |||||| | |||||| |||| | ||||| ||  |||||||||||||||||||| | ||||| || |||||||||    
T  38437597 aaaattgcaataccatcataataacaaaaaagtgtaacatcttaatatataactttagcatgttttgattttcaatatataagatgttttgtgtcaattt 38437498  T
Q  412 tagaaattagacatgatttat 432  Q
    | ||||| |||| | ||||||    
T  38437497 tggaaatgagacttaatttat 38437477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 4421588 - 4421655
Alignment:
Q  329 aaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggat 396  Q
    |||||||  |||||| |||||||  |||||| |||||||| | ||||||||||||||||||| |||||    
T  4421588 aaaataaccaaaaagtgcaacatattaatttataactctagtgtgttttgattttcaatatataggat 4421655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 26362666 - 26362753
Alignment:
Q  25 tactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||   || ||||||| ||||| |||||||||||||||||| ||||||  ||| ||| |||||||  |||||| ||||||    
T  26362666 tactccggtttggatgcggtaaaaagtccatccattatattaatgggtgggtttggacaaacccactagttttcagtttggtttgggt 26362753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 34696498 - 34696561
Alignment:
Q  167 ttttttctcacaaaaattactgaacattttattttctt-tcaaaaattgtgtaatctatttcac 229  Q
    |||||||||| |||||||||| ||| ||||||||||||   ||||||||||||| |||||||||    
T  34696498 ttttttctcataaaaattactcaactttttattttcttaaaaaaaattgtgtaacctatttcac 34696561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 35667985 - 35667890
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||| ||||| ||||||  |||||||||||||| || || |||||||| |||||| || |||  ||| ||| ||||||| ||||||| ||||||    
T  35667985 atatagagtactgcggtttgggtgaggtaaaatgttcatccgttatattactgggtgggtctggacaaacccactagttttcggtttggtttgggt 35667890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 9888900 - 9888854
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  9888900 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 9888854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 29289597 - 29289551
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  29289597 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 29289551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 35667824 - 35667762
Alignment:
Q  167 ttttttctcacaaaaattactgaacattttattttctttcaaaaattgtgtaatctatttcac 229  Q
    |||||||||| |||| ||||| ||| ||||||||||||   |||||||||||| |||||||||    
T  35667824 ttttttctcataaaatttactcaactttttattttcttaataaaattgtgtaacctatttcac 35667762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 4421711 - 4421752
Alignment:
Q  517 aaaaatatgaatattattgggtaagtgagtttattgggtttg 558  Q
    |||||||| || |||||||||||||||||||| |||||||||    
T  4421711 aaaaatattaacattattgggtaagtgagttttttgggtttg 4421752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 3e-56; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 45222677 - 45222816
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||||| |||||    
T  45222677 gttggatgatgtaaaattgcattaacatcaaaataattaaaaagtgcaacatcataattcgtaactccaacatgttttgattttcaatatagagaatgtg 45222776  T
Q  400 ttatgtcaattttagaaattagacatgatttataaccaaa 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45222777 ttatgtcaattttagaaattagacatgatttataaccaaa 45222816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 379 - 553
Target Start/End: Complemental strand, 52498596 - 52498428
Alignment:
Q  379 attttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttg 478  Q
    |||||||||||||||||| |||| |||||||||| |||||||||| |||||||||||||              ||||||||||||||||||||| |||||    
T  52498596 attttcaatatagaggatttgttgtgtcaatttttgaaattagacttgatttataacca------ttttttttaaagaaagattataaccaaaatctttg 52498503  T
Q  479 ttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgg 553  Q
    |||||||||||| ||||||||||||||||||| ||| | |||||||||| |||||||| |||||| |||||||||    
T  52498502 ttattctccttcctccctatgaaaatgaaaattaaaattaaaatatgaacattattggataagtgggtttattgg 52498428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 452 - 555
Target Start/End: Original strand, 53592763 - 53592866
Alignment:
Q  452 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 551  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||    
T  53592763 aaagaaagattataaccaaaatctttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttatt 53592862  T
Q  552 gggt 555  Q
    ||||    
T  53592863 gggt 53592866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 45222380 - 45222605
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttt-----tggtttgggttggg 111  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||||||||||| || ||||||| ||| ||| |||||||     ||||||||||||||    
T  45222380 atatagggtaccccggtttgggtgaggtaaaatgtccacccattatattaatggatgggtttgggaaaacccactagttttcggtttggtttgggttggg 45222479  T
Q  112 --------tctccaaattaattttctannnnnnngataatattaaatgactagagtcctcatattttttctcacaaaaattactgaacattttattttct 203  Q
            |  |||||||| ||||||        | |||||||||||||||||| ||||| |||||||||||| |||||||||| ||| |||||||||||    
T  45222480 cagtgggttacccaaattatttttctgtttttttggtaatattaaatgactagaatcctcgtattttttctcataaaaattactcaactttttattttct 45222579  T
Q  204 ttcaaaaattgtgtaatctatttcac 229  Q
    |  |||||||||||||||||||||||    
T  45222580 taaaaaaattgtgtaatctatttcac 45222605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 312 - 423
Target Start/End: Complemental strand, 52498712 - 52498601
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||  ||| |||||||||||||||||| ||||| ||||||||||| |||| ||  ||||||||||||||||||||||||||||||| |||||||||    
T  52498712 aaaattgttttatcatcaaaataattaaaaaaggcaagatcataatttgcaactatatcatgttttgattttcaatatagaggatgtgttgtgtcaattt 52498613  T
Q  412 tagaaattagac 423  Q
    ||||||||||||    
T  52498612 tagaaattagac 52498601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 301 - 423
Target Start/End: Original strand, 53592569 - 53592690
Alignment:
Q  301 ttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgt 400  Q
    |||||||| | |||||||| ||||||||||||||| ||||| | |||| ||||||||||| |||| ||   |||||||||||||||||||||||||||||    
T  53592569 ttggatgacgtaaaattgctttaacatcaaaataactaaaa-gtgcaagatcataatttgcaactatatcctgttttgattttcaatatagaggatgtgt 53592667  T
Q  401 tatgtcaattttagaaattagac 423  Q
    | |||||||||||||||||||||    
T  53592668 tgtgtcaattttagaaattagac 53592690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 300 - 420
Target Start/End: Original strand, 4774180 - 4774301
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaata-tgttttgattttcaatatagaggatgt 398  Q
    ||||||||| | |||||||| ||| ||||||| ||| || |||  ||||||||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  4774180 gttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatatagaggatgt 4774279  T
Q  399 gttatgtcaattttagaaatta 420  Q
    ||| |||||||||||| |||||    
T  4774280 gttttgtcaattttaggaatta 4774301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 300 - 420
Target Start/End: Original strand, 12025918 - 12026039
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttga-ttttcaatatagaggatgt 398  Q
    ||||||||| | |||||||  ||| ||| ||| ||| || |||  |||||||||||||||||||||||||||| |||| | ||||||||||||||| |||    
T  12025918 gttggatgacgtaaaattgttttagcattaaagtaactataaattgcaacatcataatttgtaactctaatatttttttaattttcaatatagaggctgt 12026017  T
Q  399 gttatgtcaattttagaaatta 420  Q
    ||||||||||||||||||||||    
T  12026018 gttatgtcaattttagaaatta 12026039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 15042392 - 15042265
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||| |||||||| ||  |||||| ||||||||  ||||||||||| ||| ||||||||||||||||||||||| |||| || |||||||||    
T  15042392 aaaattgcattagcatcaaaacaaccaaaaagtgcaacatccgaatttgtaactataacatgttttgattttcaatatagagaatgtcttttgtcaattt 15042293  T
Q  412 tagaaattagacatgatttataaccaaa 439  Q
    |  ||||||||| |||||| | ||||||    
T  15042292 tgaaaattagacttgatttgtgaccaaa 15042265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 300 - 420
Target Start/End: Original strand, 39085080 - 39085202
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg--attttcaatatagaggatg 397  Q
    ||||||||| | |||||||| ||| ||| ||| ||| || |||  |||||||||||||||||||||| ||||| ||||   |||||||||||||||||||    
T  39085080 gttggatgacgtaaaattgctttagcattaaagtaactataaattgcaacatcataatttgtaactccaatatttttttttattttcaatatagaggatg 39085179  T
Q  398 tgttatgtcaattttagaaatta 420  Q
    |||| ||||||||||||||||||    
T  39085180 tgttgtgtcaattttagaaatta 39085202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 312 - 393
Target Start/End: Complemental strand, 25109393 - 25109312
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagag 393  Q
    |||||||| ||||||| |||||||  |||||| |||||||| |||||||||||||||| |||||||||||||||||||||||    
T  25109393 aaaattgcattaacattaaaataacaaaaaagtgcaacatcgtaatttgtaactctaacatgttttgattttcaatatagag 25109312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 48432901 - 48433014
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgt-----tttgattttcaatatagaggatgtgttatgtc 406  Q
    |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| |     ||| ||||||||||||||||||||||| ||||    
T  48432901 aaaattgcattagcatcaaagtaactataaactgcaacatcataatttgtaactctaatatttttttattttattttcaatatagaggatgtgttgtgtc 48433000  T
Q  407 aattttagaaatta 420  Q
    ||||||||||||||    
T  48433001 aattttagaaatta 48433014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 313 - 422
Target Start/End: Original strand, 26829364 - 26829473
Alignment:
Q  313 aaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaatttt 412  Q
    ||||||| ||||||| |||||||||||||||  ||||||  |||||||||||| ||| ||||||||||||||   |||||| || | || ||||||||||    
T  26829364 aaattgcattaacattaaaataattaaaaagtacaacattctaatttgtaactttaacatgttttgattttcgtcatagagaatatcttgtgtcaatttt 26829463  T
Q  413 agaaattaga 422  Q
     |||||||||    
T  26829464 ggaaattaga 26829473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 19280815 - 19280688
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| |||| ||||||||||| ||||||   |||||  ||||||||||||||||  |||||| |||||||||||||| ||| | || |||||||||    
T  19280815 aaaattgcattaatatcaaaataatcaaaaagtataacattctaatttgtaactctaacttgttttaattttcaatatagacgatatcttgtgtcaattt 19280716  T
Q  412 tagaaattagacatgatttataaccaaa 439  Q
    |  | ||||||| |||||| | ||||||    
T  19280715 tgaatattagacttgatttgtgaccaaa 19280688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 21810860 - 21810733
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| |||  |||||| |||| |||||| |||||||  |||||||||||| ||  |||||||||||||  ||||||||| ||| || ||| |||||    
T  21810860 aaaattgcattagtatcaaattaatcaaaaagtgcaacatactaatttgtaactttagcatgttttgatttttgatatagaggttgtcttgtgttaattt 21810761  T
Q  412 tagaaattagacatgatttataaccaaa 439  Q
    | |||| ||||| |||||||| ||||||    
T  21810760 tcgaaagtagacttgatttatgaccaaa 21810733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 7840700 - 7840622
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||  ||||||  ||||||  |||||||||||||||||||||||||||||||||||||    
T  7840700 aaaattgcattagtatcaaaataaccaaaaagttcaacatattaatttgtaactctaatatgttttgattttcaatata 7840622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 14609570 - 14609634
Alignment:
Q  327 tcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatag 391  Q
    |||||||||  |||||| |||||||| ||||||| |||||||| |||||||||||||||||||||    
T  14609570 tcaaaataagaaaaaagtgcaacatcctaatttgaaactctaacatgttttgattttcaatatag 14609634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 4773878 - 4773973
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||  ||||||| ||||||    
T  4773878 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttggtttgggt 4773973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 52499015 - 52498928
Alignment:
Q  25 tactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    ||||||| |||  ||| ||||||| ||||||| |||||||||||||||| ||||||| ||| ||| ||||||  ||||||||||||||    
T  52499015 tactccgatttgggtgcggtaaaaagtccacctattatattaatgggtgggtttgggcaaacccactagtttccggtttgggttgggt 52498928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 28700090 - 28700196
Alignment:
Q  326 atcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacat 425  Q
    ||||||||||  |||||  |||||||| |||||||||||| ||| ||||||| |||||||||||||| |||   || ||||||||||  ||||||||| |    
T  28700090 atcaaaataaccaaaaattgcaacatcttaatttgtaactataacatgttttaattttcaatatagaagataccttgtgtcaattttgaaaattagactt 28700189  T
Q  426 gatttat 432  Q
     ||||||    
T  28700190 aatttat 28700196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 46552007 - 46551929
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||  |||||  | |||||| |||||||||||| ||||||||||||||||||||||||    
T  46552007 aaaattgcattagtatcaaaataacaaaaaaatgtaacatcttaatttgtaactataatatgttttgattttcaatata 46551929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 41236982 - 41236921
Alignment:
Q  329 aaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||  |||||| | |||||  |||||||||||||||||||||||||||||||||||||    
T  41236982 aaaataaacaaaaagtgtaacatattaatttgtaactctaatatgttttgattttcaatata 41236921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 52498875 - 52498803
Alignment:
Q  158 gtcctcatattttttctcacaaaaattactgaacattttattttctt-tcaaaaattgtgtaatctatttcac 229  Q
    |||||| |||||||||||| |||||||||| ||| ||||||||||||   ||||||||||||| |||||||||    
T  52498875 gtcctcgtattttttctcataaaaattactcaactttttattttcttaaaaaaaattgtgtaacctatttcac 52498803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 39084779 - 39084874
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| |||||||| || ||||||| ||| ||| || |||  ||||||| ||||||    
T  39084779 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatggatgggtttgggcaaacccactaatttccggtttggtttgggt 39084874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 26829486 - 26829532
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    ||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  26829486 caaaacctttgctattctccttctttcctatgaaaataaaaataaaa 26829532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 52965530 - 52965452
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||  |||||| |||||||  |||||| |||||||| ||| |||||||||||||||||    
T  52965530 aaaattgcattagtatcaaaataaccaaaaagtgcaacatattaatttctaactctagtatattttgattttcaatata 52965452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 11344441 - 11344372
Alignment:
Q  356 atttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacat 425  Q
    |||||||||||||| ||||||| ||||| ||||||||| |||| || ||||||||||  |||||| ||||    
T  11344441 atttgtaactctaacatgttttaattttaaatatagagaatgttttttgtcaattttgaaaattaaacat 11344372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 436
Target Start/End: Original strand, 53592695 - 53592752
Alignment:
Q  379 attttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataacc 436  Q
    |||||||||||| ||||| |||| |||||||||| ||||||| || ||||||||||||    
T  53592695 attttcaatataaaggatttgttgtgtcaatttttgaaattaaacttgatttataacc 53592752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 48432585 - 48432649
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttggg 81  Q
    ||||||| |||||||||||  || ||||||||| ||||||| ||| ||||||||||| |||||||    
T  48432585 atataggatactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttggg 48432649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 53592417 - 53592489
Alignment:
Q  158 gtcctcatattttttctcacaaaaattactgaacattttattttctt-tcaaaaattgtgtaatctatttcac 229  Q
    |||||| |||||||||||| |||||||||| ||| ||||||||||||   ||||||||||||  |||||||||    
T  53592417 gtcctcgtattttttctcataaaaattactcaactttttattttcttaaaaaaaattgtgtagcctatttcac 53592489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 561
Target Start/End: Complemental strand, 21515094 - 21515035
Alignment:
Q  502 aatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaat 561  Q
    ||||||||||||| ||||||| |   ||||||||| ||||||||||||||||| ||||||    
T  21515094 aatgaaaataaaaataaaaatgttggtattattggataagtgagtttattgggattgaat 21515035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 53592296 - 53592359
Alignment:
Q  42 ggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgg 105  Q
    ||||||| |||||| ||||||||||||||||| ||||| | ||| ||| ||||||| |||||||    
T  53592296 ggtaaaaagtccactcattatattaatgggtgggtttgagcaaacccactagttttcggtttgg 53592359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 4774317 - 4774363
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  4774317 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 4774363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 456 - 510
Target Start/End: Complemental strand, 14609533 - 14609479
Alignment:
Q  456 aaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaat 510  Q
    ||||||||| |||||||  |||| ||||||||||||||| ||||||||| |||||    
T  14609533 aaagattatgaccaaaatttttggtattctccttcttccatatgaaaataaaaat 14609479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 39085218 - 39085264
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  39085218 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 39085264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 48433030 - 48433076
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  48433030 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 48433076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 5e-52; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 312 - 551
Target Start/End: Complemental strand, 37675090 - 37674856
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||  ||||||||||||||| ||||||| ||||||||||||||||||||| ||||  ||||||||||||||||||||| || |||||  ||||||     
T  37675090 aaaattgttttaacatcaaaataactaaaaagtgcaacatcataatttgtaactataat--gttttgattttcaatatagagaatttgttacttcaattg 37674993  T
Q  412 tagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaata 511  Q
    | |||||||||| ||||||||||||||             ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||     
T  37674992 ttgaaattagacttgatttataaccaa---ttttttttttaaagaaagattataatcaaaacctttgttattctccttcctccctatgaaaatgaaaatg 37674896  T
Q  512 aaagtaaaaatatgaatattattgggtaagtgagtttatt 551  Q
    ||| ||||| |||||| |||||||| ||||||| ||||||    
T  37674895 aaaataaaattatgaacattattggataagtgaatttatt 37674856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 375 - 548
Target Start/End: Original strand, 37781276 - 37781450
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnn-aaagaaagattataaccaaaac 473  Q
    |||||||||||||||||||||| |||| | |||||||| |||||||||| ||||||||||||||              ||||||||||||||| ||||||    
T  37781276 tttgattttcaatatagaggatttgttgtatcaatttttgaaattagacttgatttataaccaatttatattttttttaaagaaagattataatcaaaac 37781375  T
Q  474 ctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagttt 548  Q
    |||||| |||||||||| ||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||    
T  37781376 ctttgtcattctccttcctccctatgaaaatgaaaatgaaaataaaaatacgaacattattgggtaagtgagttt 37781450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 37781164 - 37781275
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||||||||||||||| || |||| ||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||| |||||||||    
T  37781164 aaaattgctttaacatcaaaataactagaaagtgcaacatcataatttgtaattataacatgttttgattttcaatatagatgatgtgttgtgtcaattt 37781263  T
Q  412 tagaaattagac 423  Q
    ||||||||||||    
T  37781264 tagaaattagac 37781275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 39918934 - 39919045
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||||||||||||||| || |||| ||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||| |||||||||    
T  39918934 aaaattgctttaacatcaaaataactagaaagtgcaacatcataatttgtaattataacatgttttgattttcaatatagatgatgtgttgtgtcaattt 39919033  T
Q  412 tagaaattagac 423  Q
    ||||||||||||    
T  39919034 tagaaattagac 39919045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 420
Target Start/End: Complemental strand, 31627925 - 31627816
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  31627925 aaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatatagaggatgtgttgtgtcaatt 31627826  T
Q  411 ttagaaatta 420  Q
    ||||||||||    
T  31627825 ttagaaatta 31627816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 232321 - 232250
Alignment:
Q  349 catcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 420  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  232321 catcataatttgtaactctaatatttttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 232250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 708732 - 708661
Alignment:
Q  349 catcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 420  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  708732 catcataatttgtaactctaatatttttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 708661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 745944 - 745873
Alignment:
Q  349 catcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 420  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  745944 catcataatttgtaactctaatatttttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 745873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 869839 - 869768
Alignment:
Q  349 catcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaatta 420  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  869839 catcataatttgtaactctaatatttttttattttcaatatagaggatgtgttgtgtcaattttagaaatta 869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 33365386 - 33365265
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaata-tgttttgattttcaatatagaggatgt 398  Q
    ||||||||| | |||||||| ||| ||||||| ||| || |||  ||||||||||||||||||||||||||| | |||| |||||||||||| |||||||    
T  33365386 gttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatataaaggatgt 33365287  T
Q  399 gttatgtcaattttagaaatta 420  Q
    ||| ||||||||||| ||||||    
T  33365286 gttgtgtcaattttaaaaatta 33365265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 375 - 523
Target Start/End: Original strand, 39919046 - 39919196
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaa---acnnnnnnnnnnnaaagaaagattataaccaaa 471  Q
    |||||||||||||||||||||| |||| | |||||||| |||||||||| ||||||||||||||   |             || ||||||||||||||||    
T  39919046 tttgattttcaatatagaggatttgttgtatcaatttttgaaattagacttgatttataaccaatttatatatttttttttaa-aaagattataaccaaa 39919144  T
Q  472 acctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaata 523  Q
    |||||||| |||||||||| ||||||||||||||||||| ||| ||||||||    
T  39919145 acctttgtcattctccttcctccctatgaaaatgaaaatgaaaataaaaata 39919196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 2958 - 2834
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg----attttcaatatagagga 395  Q
    ||||||||| | |||||| | ||| ||||||| ||| || |||  |||||||||||||||||||||||| ||| ||||     |||||||||||||||||    
T  2958 gttggatgacgtaaaattactttagcatcaaagtaactataaattgcaacatcataatttgtaactctattatttttttttttattttcaatatagagga 2859  T
Q  396 tgtgttatgtcaattttagaaatta 420  Q
    |||||| ||||||||||||||||||    
T  2858 tgtgttgtgtcaattttagaaatta 2834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 312 - 387
Target Start/End: Original strand, 13248396 - 13248471
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaat 387  Q
    |||||||| |||  ||||||||||  |||||| |||||||  ||||||||||||||||||||||||||||||||||    
T  13248396 aaaattgcattagtatcaaaataaccaaaaagtgcaacatattaatttgtaactctaatatgttttgattttcaat 13248471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 27822587 - 27822682
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||| | ||||   |||| |||||||||||||||||||||||||||||| ||||||  ||| ||| ||||||| ||||||| ||||||    
T  27822587 atatagggtacttcagtttggttgagataaaatgtccacccattatattaatgggtgggtttggacaaacccactagttttcggtttggtttgggt 27822682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 9995022 - 9995100
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||| ||||||||||  |||||| |||||||  ||||||||||||||| |||||||||||||| ||||||    
T  9995022 aaaattgcattaatatcaaaataaccaaaaagtgcaacatattaatttgtaactctagtatgttttgatttttaatata 9995100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 44172515 - 44172437
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||| ||||||||||| |||||| |||||||  |||||||||||||||  ||||||||||||| ||||||    
T  44172515 aaaattgcattaatatcaaaataatcaaaaagtgcaacatattaatttgtaactctagcatgttttgatttttaatata 44172437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 338 - 439
Target Start/End: Original strand, 14050662 - 14050763
Alignment:
Q  338 aaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataacca 437  Q
    |||||| ||||||||| | ||||||||||||  |  |||||||||||||||||||  |||| |  ||||||||||| ||||||||| |||||||| ||||    
T  14050662 aaaaagtgcaacatcagactttgtaactctagcaaattttgattttcaatatagataatgtctgttgtcaattttaaaaattagacttgatttatgacca 14050761  T
Q  438 aa 439  Q
    ||    
T  14050762 aa 14050763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 39330967 - 39331031
Alignment:
Q  326 atcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    ||||||||||  |||||| |||||||  ||||||||||||||| |||||||||||||||||||||    
T  39330967 atcaaaataaccaaaaagtgcaacatattaatttgtaactctagtatgttttgattttcaatata 39331031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 31628234 - 31628139
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    ||||||| |||||| ||||  || ||||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||| ||||||||||||||    
T  31628234 atataggatactccagtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttgggttgggt 31628139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 439
Target Start/End: Original strand, 21469148 - 21469226
Alignment:
Q  361 taactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 439  Q
    ||||||||| |||||||||||||||||||| || |||| || |||||| |||  ||||||||| |||||||| ||||||    
T  21469148 taactctaacatgttttgattttcaatataaagaatgtcttttgtcaactttgaaaattagacttgatttatgaccaaa 21469226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 27822721 - 27822779
Alignment:
Q  138 gataatattaaatgactagagtcctcatattttttctcacaaaaattactgaacatttt 196  Q
    ||||| ||||||||||||||||||||||||||||||||| || ||||||| ||| ||||    
T  27822721 gataacattaaatgactagagtcctcatattttttctcataataattactcaacttttt 27822779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 338 - 429
Target Start/End: Original strand, 36700729 - 36700821
Alignment:
Q  338 aaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatat-agaggatgtgttatgtcaattttagaaattagacatgatt 429  Q
    |||||| |||||||   ||||||||||||||| ||||||||||||||||||| | || |||  || ||||||||||| ||||||||| |||||    
T  36700729 aaaaagtgcaacatatgaatttgtaactctaaaatgttttgattttcaatataaaagaatgccttttgtcaattttaaaaattagacttgatt 36700821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 36700894 - 36700962
Alignment:
Q  371 atgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 439  Q
    |||||||||||||||||||| || |||| || |||| |||||| ||||||||| |||||||| ||||||    
T  36700894 atgttttgattttcaatataaagaatgtcttttgtcgattttaaaaattagacttgatttatgaccaaa 36700962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 22343046 - 22342951
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  |||||||||||| ||||||| ||| | || ||||  |||||||||||  ||| || ||| ||| |||||||||||    
T  22343046 atatagggtactccggtttgggtgaggtaaaatatccacccgttaaactattgggccagtttgggtaagcccactaatttctgggttgggttgggt 22342951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 22354706 - 22354611
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  |||||||||||| ||||||| ||| | || ||||  |||||||||||  ||| || ||| ||| |||||||||||    
T  22354706 atatagggtactccggtttgggtgaggtaaaatatccacccgttaaactattgggccagtttgggtaagcccactaatttctgggttgggttgggt 22354611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 37780892 - 37780979
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttg 104  Q
    ||||||| ||||||| |||  ||||||||||| |  ||||| ||||||||||||||| ||||||  ||| ||||||||||| ||||||    
T  37780892 atataggatactccgatttgggtgaggtaaaacgctcacccgttatattaatgggtgggtttggacaaacccattagttttcggtttg 37780979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 528 - 570
Target Start/End: Original strand, 36701007 - 36701049
Alignment:
Q  528 tattattgggtaagtgagtttattgggtttgaatctcgtttta 570  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  36701007 tattattgggtaagtgagtttattggatttgagtctcgtttta 36701049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 570
Target Start/End: Original strand, 13248536 - 13248589
Alignment:
Q  517 aaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgtttta 570  Q
    |||||||| || |||||||||||||||||||| |||||||||| ||| ||||||    
T  13248536 aaaaatattaacattattgggtaagtgagttttttgggtttgagtctggtttta 13248589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 2818 - 2772
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  2818 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 2772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 31627800 - 31627754
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||| ||||||| |||||||||||||||||||||| |||||    
T  31627800 caaaacattttttattcttcttcttccctatgaaaatgaaattaaaa 31627754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 312 - 514
Target Start/End: Complemental strand, 31834327 - 31834131
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||  ||||||||||||||| ||||  | ||||||||||||||||||||| ||||  ||||||||||||||||||||| || |||||||||||||     
T  31834327 aaaattgttttaacatcaaaataactaaa--gtgcaacatcataatttgtaactataat--gttttgattttcaatatagagaatttgttatgtcaattg 31834232  T
Q  412 tagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaata 511  Q
    | |||||||||| ||||||||||||||             ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  31834231 ttgaaattagacttgatttataaccaa--tttttttttttaaagaaagattataatcaaaacctttgttattctccttcctccctatgaaaatgaaaata 31834134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 375 - 553
Target Start/End: Original strand, 11172522 - 11172705
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 474  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| |||            |||||||||||||||||||||||    
T  11172522 tttgattttcaatatagaggatgtgttgtatcaattttagaaattagacttgatttataacaaaa-acatatttttaaaagaaagattataaccaaaacc 11172620  T
Q  475 tttgttattctccttcttccct------atgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgg 553  Q
    |||||||||||||||| |||||      |||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  11172621 tttgttattctccttcctccctatgagaatgagaatgaaaataaaaataaaaatatgaacattattgggtaagtaagtttattgg 11172705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 312 - 423
Target Start/End: Complemental strand, 17436973 - 17436862
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||||||||||||||| ||||||| ||||| || |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  17436973 aaaattgctttaacatcaaaataactaaaaagtgcaacgtcgtaatttgtaactataacatgttttgattttcaatatagaggatgtgttgtgtcaattt 17436874  T
Q  412 tagaaattagac 423  Q
    ||||||||||||    
T  17436873 tagaaattagac 17436862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 303 - 425
Target Start/End: Complemental strand, 18999645 - 18999523
Alignment:
Q  303 ggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgtta 402  Q
    |||||| | |||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||     
T  18999645 ggatgacgtaaaattgctttaacttcaaaataactaaaaagtgcaacatcataatttgtaactctaacatgtttttattttcaatacagaggatgtgttg 18999546  T
Q  403 tgtcaattttagaaattagacat 425  Q
    | |||||||||||||||||||||    
T  18999545 tatcaattttagaaattagacat 18999523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 376 - 580
Target Start/End: Complemental strand, 18999523 - 18999325
Alignment:
Q  376 ttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacct 475  Q
    |||||||||||||||||||||   || |||||| |||||||||||||| ||||||||||||               ||||||||||||||||| ||| ||    
T  18999523 ttgattttcaatatagaggattcattgtgtcaaatttagaaattagacttgatttataacc------tttttttttaaagaaagattataacctaaagct 18999430  T
Q  476 ttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgttttatcaaa 575  Q
    ||||||||||||||| ||||||||||||||||||| |||  ||| ||||||| ||||||||||||||| ||||||||||||||  ||| |||||| | ||    
T  18999429 ttgttattctccttcctccctatgaaaatgaaaatgaaaaaaaatatatgaacattattgggtaagtgggtttattgggtttgggtctggttttacccaa 18999330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 325 - 432
Target Start/End: Original strand, 6940324 - 6940431
Alignment:
Q  325 catcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagaca 424  Q
    ||||||||||| || |||  ||||||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||||||||||     
T  6940324 catcaaaataactataaattgcaacatcataatttgtaactctcacatgttttgattttcaataaagaggatgtgttgtgtcaattttagaaattagact 6940423  T
Q  425 tgatttat 432  Q
     |||||||    
T  6940424 agatttat 6940431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 300 - 420
Target Start/End: Original strand, 3100887 - 3101008
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgt 398  Q
    ||||||||| | |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  3100887 gttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatatagaggatgt 3100986  T
Q  399 gttatgtcaattttagaaatta 420  Q
    ||| ||||||||||||||||||    
T  3100987 gttgtgtcaattttagaaatta 3101008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 30125581 - 30125461
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgt 398  Q
    ||||||||| | |||||||| ||||||||||| ||| || ||  | ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  30125581 gttggatgacgtaaaattgctttaacatcaaagtaactataattg-caacatcataatttgtaactctaatattttttttattttcaatatagaggatgt 30125483  T
Q  399 gttatgtcaattttagaaatta 420  Q
    ||| ||||||||||||||||||    
T  30125482 gttgtgtcaattttagaaatta 30125461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 300 - 420
Target Start/End: Original strand, 8770279 - 8770400
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgt 398  Q
    ||||||||| | ||||||   ||| ||||||| ||| || |||  ||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||    
T  8770279 gttggatgacgtaaaattattttagcatcaaagtaactataaattgcaacatcataatttgtaactataatattttttttattttcaatatagaggatgt 8770378  T
Q  399 gttatgtcaattttagaaatta 420  Q
    ||| ||||||||||||||||||    
T  8770379 gttgtgtcaattttagaaatta 8770400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 453 - 555
Target Start/End: Complemental strand, 17436779 - 17436675
Alignment:
Q  453 aagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaat---aaaagtaaaaatatgaatattattgggtaagtgagttta 549  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||   ||||  | ||||||||| ||||||  ||||||| |||||    
T  17436779 aagaaagattataaccaaaacttttgttattctccttcctccctatgaaaatgaaaatgaaaaaaaaataaatatgaacattatt-tgtaagtgggttta 17436681  T
Q  550 ttgggt 555  Q
    ||||||    
T  17436680 ttgggt 17436675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 11172430 - 11172503
Alignment:
Q  327 tcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgt 400  Q
    ||||||||| |||| || ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||    
T  11172430 tcaaaataactaaagagtgcaacatcatagtttgtaactctaacatgttttgatttttaatatagaggatgtgt 11172503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 30125882 - 30125787
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || ||| |||||||| ||||||    
T  30125882 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttctggtttggtttgggt 30125787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 327 - 439
Target Start/End: Original strand, 23770505 - 23770615
Alignment:
Q  327 tcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatg 426  Q
    |||||| || ||||||| ||||||||  ||||||||| | ||| |||||||||||||||||||||||  ||| || ||||||||||  ||||||||| ||    
T  23770505 tcaaaacaactaaaaagtgcaacatccaaatttgtaattgtaacatgttttgattttcaatatagag--tgtcttttgtcaattttgaaaattagacttg 23770602  T
Q  427 atttataaccaaa 439  Q
    |||| | ||||||    
T  23770603 atttgtgaccaaa 23770615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 17437283 - 17437190
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgg 110  Q
    |||||||  |||||||||| ||||||||||||  |||| |  ||||||||||||||| ||||||| |||  || ||||||| ||||||||||||    
T  17437283 atataggaaactccggtttgtgtgaggtaaaacatccatctgttatattaatgggtgggtttgggcaaactcactagttttcggtttgggttgg 17437190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 558
Target Start/End: Original strand, 31135820 - 31135912
Alignment:
Q  466 accaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 558  Q
    ||||||| ||||| ||||| |||||||   ||||||||| ||||||||| |||||||  |  |||||||||||| |||| |||||||||||||    
T  31135820 accaaaatctttggtattccccttcttttttatgaaaataaaaataaaaataaaaatgcgggtattattgggtacgtgattttattgggtttg 31135912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 17437154 - 17437064
Alignment:
Q  140 taatattaaatgactagagtcctcatattttttctcacaaaaattactgaacattttattttctt---tcaaaaattgtgtaatctatttcac 229  Q
    ||||||||||||||| |  |||||||||||| ||||| |||||||||| ||| ||||||||||||     ||||||||||||| |||||||||    
T  17437154 taatattaaatgactcg--tcctcatattttgtctcataaaaattactcaactttttattttcttaaaaaaaaaattgtgtaacctatttcac 17437064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 31135714 - 31135800
Alignment:
Q  325 catcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaatttt 412  Q
    |||||||||||| |||||| ||||||||  |||||| |||||||  || |||| |||||| ||||||||||||| || ||||||||||    
T  31135714 catcaaaataatcaaaaagtgcaacatccaaatttgaaactctagcat-tttttattttcgatatagaggatgtcttgtgtcaatttt 31135800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 438
Target Start/End: Complemental strand, 17436861 - 17436796
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaatt--agacatgatttataaccaa 438  Q
    ||||||||||||||||||| || |||| |||||||||| ||||||  |||| ||||||||||||||    
T  17436861 tttgattttcaatatagagaatttgttgtgtcaatttttgaaattagagacttgatttataaccaa 17436796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 31261471 - 31261513
Alignment:
Q  354 taatttgtaactctaatatgttttgattttcaatatagaggat 396  Q
    ||||||||||||||| ||||||||||||||||||||| |||||    
T  31261471 taatttgtaactctagtatgttttgattttcaatatataggat 31261513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 8769985 - 8770074
Alignment:
Q  23 ggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||  ||  |||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||| ||||||| ||||||    
T  8769985 ggtactccggtttgggtttggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttggtttgggt 8770074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 558
Target Start/End: Original strand, 23770639 - 23770695
Alignment:
Q  502 aatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 558  Q
    ||||||||||||| ||||||| |    ||||||||||||||||||||||||||||||    
T  23770639 aatgaaaataaaaataaaaatgttggcattattgggtaagtgagtttattgggtttg 23770695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 3100586 - 3100681
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||   | ||||||||| ||||||| ||| ||||||||||| ||| ||| ||| ||| || |||  ||||||| ||||||    
T  3100586 atatagggtactccggtttggattaggtaaaatatccacccgttaaattaatgggtgggttcgggcaaacccactaatttccggtttggtttgggt 3100681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 570
Target Start/End: Original strand, 6940463 - 6940530
Alignment:
Q  503 atgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgtttta 570  Q
    |||||||| ||| |||||||||  | ||||||||||||||| ||||||||||| ||| ||| ||||||    
T  6940463 atgaaaatgaaaataaaaatatagacattattgggtaagtgggtttattgggtctgagtctggtttta 6940530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 648
Target Start/End: Original strand, 6941462 - 6941501
Alignment:
Q  609 aaaaccatatctacccaatcacccaaccgaatccactttt 648  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  6941462 aaaaccatatccacccaatcacccaacccaatccactttt 6941501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 9606236 - 9606315
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaa-tatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||  |||||| |||| ||  |||||||||||||||| ||| |||||||||||||||||    
T  9606236 aaaattgcattagtatcaaaataaccaaaaagtgcaatatattaatttgtaactctaagtatattttgattttcaatata 9606315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 11172263 - 11172318
Alignment:
Q  156 gagtcctcatattttttctcacaaaaattactgaacattttattttctttcaaaaa 211  Q
    |||||||| ||| |||||||| |||||||||| ||| ||||||||||||| |||||    
T  11172263 gagtcctcgtatattttctcataaaaattactcaactttttattttctttaaaaaa 11172318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 18999803 - 18999732
Alignment:
Q  158 gtcctcatattttttctcacaaaaattactgaacattttattttctttcaaaaattgtgtaatctatttcac 229  Q
    |||||| |||||||||||| |||| ||||| ||| ||||||||| ||   |||||||||||| |||||||||    
T  18999803 gtcctcctattttttctcataaaatttactcaactttttatttttttaataaaattgtgtaacctatttcac 18999732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 31834638 - 31834559
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagttt 96  Q
    ||||||| ||||||| |||   |||||||||||||||| || ||| |||||||| |||||||||| ||| ||| ||||||    
T  31834638 atataggatactccgatttggatgaggtaaaatgtccatccgttaaattaatggatgagtttgggcaaacccactagttt 31834559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 6940146 - 6940215
Alignment:
Q  156 gagtcctcatattttttctcacaaaaattactgaacattttattttctttcaaaaattgtgtaatctattt 226  Q
    ||||| ||||||||||| ||| ||||||| || ||| ||||| ||||||| ||||||||||||| ||||||    
T  6940146 gagtcttcatattttttttcataaaaattgctcaacttttta-tttctttaaaaaattgtgtaacctattt 6940215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 8770416 - 8770462
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  8770416 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 8770462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 6939987 - 6940040
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgg 70  Q
    ||||||| |||||||||||  |||  |||||||||||| |||||||||||||||    
T  6939987 atataggatactccggtttgggtggcgtaaaatgtccatccattatattaatgg 6940040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 13601192 - 13601269
Alignment:
Q  19 atagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagttt 96  Q
    |||| |||||| |||||  |||| | |||||||||| ||||||||||||||| || ||||||| ||| ||| ||||||    
T  13601192 atagagtactctggtttgggtgaagaaaaatgtccatccattatattaatggatgggtttgggcaaacccactagttt 13601269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 18999954 - 18999905
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatatta 66  Q
    |||||| |||||| |||||  |||||||||||||||||||| ||||||||    
T  18999954 atatagagtactctggtttgggtgaggtaaaatgtccacccgttatatta 18999905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 376 - 577
Target Start/End: Complemental strand, 890587 - 890390
Alignment:
Q  376 ttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacct 475  Q
    ||||||||||||||||||||| | |  |||||| |||||||||||||| |||||||||||||              ||||||||||||||||||||| ||    
T  890587 ttgattttcaatatagaggatttatagtgtcaaatttagaaattagacttgatttataacca-----ttttttttaaaagaaagattataaccaaaagct 890493  T
Q  476 ttgttattctccttcttccctatgaaaatgaaaat-aaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgttttatcaa 574  Q
    ||||||||||||||| ||||||||||||||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||| |||  ||||||| |    
T  890492 ttgttattctccttcctccctatgaaaatgaaaatgaaaaaaaaaattatgaatattattgggtaagtgagtttattgggtttgagtctgattttatcca 890393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 303 - 425
Target Start/End: Complemental strand, 890709 - 890587
Alignment:
Q  303 ggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgtta 402  Q
    |||||| | |||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |     
T  890709 ggatgacgtaaaattgctttaacttcaaaataactaaaaagtgcaacatcataatttgtaactctaacatgtttttattttcaatatagaggatgtgctg 890610  T
Q  403 tgtcaattttagaaattagacat 425  Q
    |||||||||||||||||||||||    
T  890609 tgtcaattttagaaattagacat 890587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 379 - 551
Target Start/End: Complemental strand, 43342709 - 43342543
Alignment:
Q  379 attttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacctttg 478  Q
    ||||||||||||||| || |||| |||||||||| |||||||||| |||||||||||||              ||||||||||||||||||||| || ||    
T  43342709 attttcaatatagagaatttgttgtgtcaatttttgaaattagacttgatttataacca------tttttttaaaagaaagattataaccaaaatctctg 43342616  T
Q  479 ttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 551  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||    
T  43342615 ttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttatt 43342543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 300 - 420
Target Start/End: Original strand, 23723187 - 23723307
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||||| |||||||| ||| ||| ||| ||| || |||  |||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  23723187 gttggatgatgtaaaattgctttagcataaaagtaactataaattgcaacatcataatttgtaactctaatatttttttattttcaatatagaggatgtg 23723286  T
Q  400 ttatgtcaattttagaaatta 420  Q
    || ||||||||||||||||||    
T  23723287 ttgtgtcaattttagaaatta 23723307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 28043803 - 28043914
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||||||| || | ||  |||||||||||||||||||||||||| |||| |||||||||    
T  28043803 aaaattgctttaacatcaaaataattaaaaagtgcaagatcataatttgcaattatatcatgttttgattttcaatatagaggatatgttgtgtcaattt 28043902  T
Q  412 tagaaattagac 423  Q
    || |||||||||    
T  28043903 taaaaattagac 28043914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 300 - 423
Target Start/End: Complemental strand, 43342837 - 43342714
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||| | || ||||||||||| |||| ||  |||||||||||||||||||||||||||||    
T  43342837 gttggatgacgtaaaattgctttaacatcaaaataactaaaaagtgtaagatcataatttgcaactatatcatgttttgattttcaatatagaggatgtg 43342738  T
Q  400 ttatgtcaattttagaaattagac 423  Q
    || |||  ||||||||||||||||    
T  43342737 ttgtgtagattttagaaattagac 43342714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 32951545 - 32951424
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgt 398  Q
    ||||||||| | |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  32951545 gttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatatagaggatgt 32951446  T
Q  399 gttatgtcaattttagaaatta 420  Q
    ||| ||||||||||||||||||    
T  32951445 gttgtgtcaattttagaaatta 32951424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 42547366 - 42547475
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| ||| ||||||| ||| || |||  ||||||||||||||| |||||||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  42547366 aaaattgctttagcatcaaagtaactataaattgcaacatcataatttataactctaatattttttttattttcaatatagaggatgtgttgtgtcaatt 42547465  T
Q  411 ttagaaatta 420  Q
    ||||||||||    
T  42547466 ttagaaatta 42547475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 312 - 420
Target Start/End: Complemental strand, 27925533 - 27925424
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| ||| ||||||| ||| || |||  | |||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||| ||||||||    
T  27925533 aaaattgctttagcatcaaagtaactataaattgaaacatcataatttgtaactctaatattttttttatttttaatatagaggatgtgttgtgtcaatt 27925434  T
Q  411 ttagaaatta 420  Q
    ||||||||||    
T  27925433 ttagaaatta 27925424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 452 - 555
Target Start/End: Original strand, 28043988 - 28044085
Alignment:
Q  452 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 551  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||       ||||||||||| |||||||||||| ||||||||||||||| |||||||    
T  28043988 aaagaaagtttataaccaaaacctttgttattctacttcctccct------gtgaaaataaaaataaaaatatgaacattattgggtaagtgggtttatt 28044081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 9958662 - 9958740
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||  |||||| |||||||  ||||||||||||||| |||||||||||||||||||||    
T  9958662 aaaattgcattagtatcaaaataaccaaaaagtgcaacatattaatttgtaactctagtatgttttgattttcaatata 9958740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 23722886 - 23722981
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| ||||||||||| ||||| | ||| |||||| |||  ||||||| ||||||    
T  23722886 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgagcaaacccattaatttccggtttggtttgggt 23722981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 26688472 - 26688381
Alignment:
Q  19 atagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgg 110  Q
    ||||| |||||||||||  ||||||||||||  |||||| ||||| || |||||| ||||||| ||||||| || ||||||| |||||||||    
T  26688472 ataggatactccggtttgagtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaatccactaatttttgggttgggttgg 26688381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 16821895 - 16821817
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||| ||||||||||   ||||| | |||||  |||||||||||||||||||||||||||||| ||||||    
T  16821895 aaaattgcattaatatcaaaataacctaaaagtgtaacatattaatttgtaactctaatatgttttgatttttaatata 16821817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 43343127 - 43343042
Alignment:
Q  25 tactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgg 110  Q
    |||||||||||  ||| ||||||| |||||||||||||||||||||||| ||||||  ||| ||| ||||||  ||||||| ||||    
T  43343127 tactccggtttgggtgtggtaaaaagtccacccattatattaatgggtgggtttggacaaacccactagtttccggtttggtttgg 43343042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 43342988 - 43342916
Alignment:
Q  158 gtcctcatattttttctcacaaaaattactgaacattttattttctt-tcaaaaattgtgtaatctatttcac 229  Q
    |||||| |||||||||||| |||||||||| ||| ||||||||||||   ||||||||||||| |||||||||    
T  43342988 gtcctcgtattttttctcataaaaattactcaactttttattttcttaaaaaaaattgtgtaacctatttcac 43342916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 30543978 - 30544053
Alignment:
Q  315 attgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||||  ||||||||||  |||| | |||||||  ||||||||||||||| |||||||||||||| ||||||    
T  30543978 attgcgttagtatcaaaataaccaaaacgtgcaacatattaatttgtaactctagtatgttttgatttttaatata 30544053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 27925408 - 27925362
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||    
T  27925408 caaaacatttgttattcttcttcttccctatgaaaatgaaattaaaa 27925362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 41477781 - 41477859
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||  |||||| | |||||  ||||||||||||||| ||| |||||||||||||||||    
T  41477781 aaaattgcattagtatcaaaataacaaaaaagtgtaacatattaatttgtaactctagtatattttgattttcaatata 41477859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 28984248 - 28984325
Alignment:
Q  313 aaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    ||||||| |||  ||||||||||  ||| || ||||||||  ||||||||||||||| ||||||||||||| ||||||    
T  28984248 aaattgcattagtatcaaaataaccaaagagtgcaacatccgaatttgtaactctaacatgttttgatttttaatata 28984325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 650
Target Start/End: Complemental strand, 54578399 - 54578358
Alignment:
Q  609 aaaaccatatctacccaatcacccaaccgaatccacttttct 650  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  54578399 aaaaccatatctacccaatcatccaacccaatccacttttct 54578358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 26071038 - 26071106
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaa 85  Q
    |||||||||||||||||||  |||||||||||||||||||| ||| | || ||||   |||||||||||    
T  26071038 atatagggtactccggtttgggtgaggtaaaatgtccacccgttaaactattgggccggtttgggtaaa 26071106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 42547052 - 42547148
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccaccca-ttatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || || |||||| |||||||  ||| ||||||||||| ||||||| ||| ||| || ||| |||||||| ||||||    
T  42547052 atatagggtactccggtttgggttagataaaatatccaccccgttaaattaatgggtgggtttgggcaaacccactaatttctggtttggtttgggt 42547148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 890867 - 890796
Alignment:
Q  158 gtcctcatattttttctcacaaaaattactgaacattttattttctttcaaaaattgtgtaatctatttcac 229  Q
    |||||| |||||||||||| |||| ||||| ||| ||||||||||||   ||||||||||||  ||||||||    
T  890867 gtcctcctattttttctcataaaatttactcaactttttattttcttaataaaattgtgtaacatatttcac 890796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 7474326 - 7474421
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    ||||||| |||||||||||  ||||| ||||||  |||||| |||||| | ||| ||||||||| ||||  || || ||||||| |||||||||||    
T  7474326 atataggatactccggtttgagtgagataaaataaccacccgttatataattggatgagtttggttaaacacactaatttttgggttgggttgggt 7474421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 23185219 - 23185148
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgatttt 383  Q
    |||||||| |||  ||||||||||  |||||| |||||||  |||| |||||||||| ||||||||||||||    
T  23185219 aaaattgcattagtatcaaaataaccaaaaagtgcaacatattaatctgtaactctagtatgttttgatttt 23185148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 24221893 - 24221802
Alignment:
Q  19 atagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgg 110  Q
    |||||||||||||||||  ||||||||||||  |||| | ||||| || |||||  ||||||| ||| ||| || ||||||| |||||||||    
T  24221893 atagggtactccggtttgagtgaggtaaaataaccactcgttatactattgggtaggtttgggcaaacccactaatttttgggttgggttgg 24221802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 23723323 - 23723369
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  23723323 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 23723369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 24221586 - 24221508
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||  ||||   |||||||  ||||||||||||||| |||||||||||||| ||||||    
T  24221586 aaaattgcattagtatcaaaataacaaaaagatgcaacatattaatttgtaactctagtatgttttgatttttaatata 24221508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 32951408 - 32951362
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  32951408 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 32951362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 42547491 - 42547537
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  42547491 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 42547537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 891010 - 890969
Alignment:
Q  25 tactccggtttatgtgaggtaaaatgtccacccattatatta 66  Q
    |||| ||||||  |||||||||||||||||||||||||||||    
T  891010 tacttcggtttgggtgaggtaaaatgtccacccattatatta 890969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 379 - 437
Target Start/End: Original strand, 28043919 - 28043979
Alignment:
Q  379 attttcaatatagag--gatgtgttatgtcaattttagaaattagacatgatttataacca 437  Q
    |||||||||||||||  ||| |||| ||||||||||  ||||||||| |||||||||||||    
T  28043919 attttcaatatagagaggatttgttgtgtcaattttttaaattagacttgatttataacca 28043979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 375 - 558
Target Start/End: Complemental strand, 27451358 - 27451176
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 474  Q
    |||||||||||||| ||||||| |||| ||||||||||  ||||||||| ||||||||||||||             ||||||||||||||||||||| |    
T  27451358 tttgattttcaatacagaggatttgttgtgtcaattttttaaattagacttgatttataaccaat-tatttttttttaaagaaagattataaccaaaatc 27451260  T
Q  475 tttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 558  Q
    |||||||||||||||| ||| ||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||| ||||||    
T  27451259 tttgttattctccttcctccgtatgaaaatgaaaatgaaaataaaaatatgaacattattgggtaagtgggtttatttggtttg 27451176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 312 - 425
Target Start/End: Complemental strand, 8423626 - 8423513
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||||| ||||||||| |||||||  |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||    
T  8423626 aaaattgctttaacttcaaaataactaaaaagttcaacatcataatttgtaactctaacatgtttttattttcaatatagaggatgtgttgtgtcaattt 8423527  T
Q  412 tagaaattagacat 425  Q
    ||||||||||||||    
T  8423526 tagaaattagacat 8423513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 300 - 423
Target Start/End: Complemental strand, 27451482 - 27451359
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||    
T  27451482 gttggatgacgtaaaattgctttaacatcaaaataactaaaaagtgcaacataataatttgtaactataacatgttttgattttcaatatagagaatgtg 27451383  T
Q  400 ttatgtcaattttagaaattagac 423  Q
    || |||||||||||||||| ||||    
T  27451382 ttgtgtcaattttagaaatcagac 27451359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 312 - 439
Target Start/End: Original strand, 5708444 - 5708571
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||| |||| || ||||| || ||| |||||    
T  5708444 aaaattgcattaccatcaaaataattaaaaagggcaacatcctaatttataactctagcatgttttgattttcgatatggatgatgtcttgtgttaattt 5708543  T
Q  412 tagaaattagacatgatttataaccaaa 439  Q
    |||||||||||| | |||||| ||||||    
T  5708544 tagaaattagacttaatttatgaccaaa 5708571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 452 - 558
Target Start/End: Complemental strand, 8423442 - 8423338
Alignment:
Q  452 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 551  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||  ||||| || || ||||||||||||||| |||||||    
T  8423442 aaagaaagattataaccaaaatctttgttattctccttcctccctatgaaaatgaaaatgaaa--aaaaaaataaacattattgggtaagtgggtttatt 8423345  T
Q  552 gggtttg 558  Q
    |||||||    
T  8423344 gggtttg 8423338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 347 - 432
Target Start/End: Original strand, 16749680 - 16749765
Alignment:
Q  347 aacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttat 432  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||    
T  16749680 aacatcataatttgtaactctaacatgttttgattttcaatatagagaatgtgttgtgtcaattttagaaattagacttaatttat 16749765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 300 - 420
Target Start/End: Original strand, 22416799 - 22416921
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg--attttcaatatagaggatg 397  Q
    ||||||||| | |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||   |||||||||||||||||||    
T  22416799 gttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttttattttcaatatagaggatg 22416898  T
Q  398 tgttatgtcaattttagaaatta 420  Q
    |||| ||||||||||||||||||    
T  22416899 tgttgtgtcaattttagaaatta 22416921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 300 - 438
Target Start/End: Original strand, 17473977 - 17474114
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||||| |||||||  | | ||||||||||| ||||| |  |||||||||||||||||  | ||| |||||||||||||||||| |||||||||     
T  17473977 gttggatgatgtaaaattgtttcagcatcaaaataactaaaa-gaacaacatcataatttgtagttataacatgttttgattttcaatacagaggatgtc 17474075  T
Q  400 ttatgtcaattttagaaattagacatgatttataaccaa 438  Q
    || ||||||||||||||||||||| |||||||| |||||    
T  17474076 ttgtgtcaattttagaaattagacttgatttatgaccaa 17474114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 34899533 - 34899642
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  34899533 aaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatatagaggatgtgttgtgtcaatt 34899632  T
Q  411 ttagaaatta 420  Q
    ||||||||||    
T  34899633 ttagaaatta 34899642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 461 - 558
Target Start/End: Complemental strand, 8371575 - 8371480
Alignment:
Q  461 ttataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 558  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||  ||||| || || ||||||||||||||| ||||||||||||||    
T  8371575 ttataaccaaaatctttgttattctccttcctccctatgaaaatgaaaatgaaa--aaaaaaataaacattattgggtaagtgggtttattgggtttg 8371480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 312 - 420
Target Start/End: Complemental strand, 30357212 - 30357103
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| |||||||     
T  30357212 aaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatatagaggatgtgttgtgtcaatc 30357113  T
Q  411 ttagaaatta 420  Q
    ||||||||||    
T  30357112 ttagaaatta 30357103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 37575847 - 37575726
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgt 398  Q
    ||||||||| | |||||||| ||| ||||||| ||| || |||  ||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||    
T  37575847 gttggatgacgcaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactttaatattttttttattttcaatatagaggatgt 37575748  T
Q  399 gttatgtcaattttagaaatta 420  Q
    ||| ||||||||||| ||||||    
T  37575747 gttgtgtcaattttaaaaatta 37575726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 461 - 558
Target Start/End: Original strand, 17474105 - 17474198
Alignment:
Q  461 ttataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttg 558  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||| |||||    ||||||| ||| ||||||||||||||| ||||||||||||||    
T  17474105 ttatgaccaagacctttgttattctccttcctccctatgaaaatgataataa----aaaaatacgaacattattgggtaagtgggtttattgggtttg 17474198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 36441614 - 36441692
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||| |||||| |||||||  ||||||||||||||| |||||||||||||||||||||    
T  36441614 aaaattgcattagtatcaaaataatcaaaaagtgcaacatattaatttgtaactctagtatgttttgattttcaatata 36441692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 27451784 - 27451696
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgg 105  Q
    ||||||| |||||| ||||  ||||||||||| |||||||||||||||||||||||| ||||||| |||  || ||||||| |||||||    
T  27451784 atataggatactccagtttgggtgaggtaaaacgtccacccattatattaatgggtgggtttgggaaaactcactagttttcggtttgg 27451696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 17206036 - 17205958
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||| ||||||||||  |||||| |||||||  ||||||||||||||| |||||||||||||| ||||||    
T  17206036 aaaattgcattaatatcaaaataaccaaaaagtgcaacatattaatttgtaactctagtatgttttgatttttaatata 17205958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 8423947 - 8423852
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||| ||||||||||||  ||||||||||||||||| || |||||||| |||||| || |||  ||| ||| ||||||| ||||||| ||||||    
T  8423947 atatagagtactccggtttgggtgaggtaaaatgtccatccgttatattactgggtgggtctggacaaacccactagttttcggtttggtttgggt 8423852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 17473669 - 17473760
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgg 110  Q
    ||||| ||||| |||||||  |||||||||  ||||||||| |||||||||||||||||||||||||||  || || |||| ||||||| ||||    
T  17473669 atataaggtaccccggtttcggtgaggtaa--tgtccacccgttatattaatgggtgagtttgggtaaactcactaattttcggtttggtttgg 17473760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 394
Target Start/End: Complemental strand, 19205996 - 19205914
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagagg 394  Q
    |||||| | ||| |||||||||||  |||||  |||||||| ||||||| |||||||  ||||||||||||||||||||||||    
T  19205996 aaaattacattagcatcaaaataacaaaaaaatgcaacatcctaatttgcaactctagcatgttttgattttcaatatagagg 19205914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 40332915 - 40333021
Alignment:
Q  326 atcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacat 425  Q
    ||||||||||  |||||  |||||||| |||||||||||| | |||||||||||||||  |||||||| || | || ||||||||||  |||||| || |    
T  40332915 atcaaaataaccaaaaactgcaacatcgtaatttgtaactttgatatgttttgatttttgatatagagaatatcttgtgtcaattttgaaaattaaactt 40333014  T
Q  426 gatttat 432  Q
    |||||||    
T  40333015 gatttat 40333021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 18890934 - 18890998
Alignment:
Q  326 atcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    ||||||||||| |||||| |||||||  ||||| ||||||||| |||||||||||||| ||||||    
T  18890934 atcaaaataatcaaaaagtgcaacatattaattagtaactctagtatgttttgatttttaatata 18890998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 20565013 - 20564949
Alignment:
Q  326 atcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    ||||||||||  |||||| |||||||  ||||||||||||||| |||||||||||||| ||||||    
T  20565013 atcaaaataaccaaaaagtgcaacatattaatttgtaactctagtatgttttgatttttaatata 20564949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 496 - 551
Target Start/End: Original strand, 16749791 - 16749846
Alignment:
Q  496 tatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 551  Q
    ||||||||||||||||||| ||||| |||||| |||||| | ||||||||||||||    
T  16749791 tatgaaaatgaaaataaaaataaaattatgaacattatttgataagtgagtttatt 16749846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 27451649 - 27451561
Alignment:
Q  140 taatattaaatgactagagtcctcatattttttctcacaaaaattactgaacattttattttctt-tcaaaaattgtgtaatctatttcac 229  Q
    ||||||||||||||  | |||| | |||||||||||| |||||||||| ||| ||||||||||||   ||||||||||||| |||||||||    
T  27451649 taatattaaatgac--gcgtccacgtattttttctcataaaaattactcaactttttattttcttaaaaaaaattgtgtaacctatttcac 27451561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 30357525 - 30357430
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| |||||||| || ||||||| ||| ||| || |||  ||||||| ||||||    
T  30357525 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatggatgggtttgggcaaacccactaatttccggtttggtttgggt 30357430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 34899218 - 34899313
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| |||| || ||| ||||||||||| ||||||| ||| ||| || |||  ||||||| ||||||    
T  34899218 atatagggtactccggtttgggttaggtaaaatatccatccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttggtttgggt 34899313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 28606457 - 28606537
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatataga 392  Q
    |||||||| ||| |||| ||||||  |||||| |||||||| |||||||||||||||  ||| ||| |||||| |||||||    
T  28606457 aaaattgcattagcatccaaataaccaaaaagtgcaacatcctaatttgtaactctagcatgctttaattttcgatataga 28606537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 22416498 - 22416593
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  ||  ||| |||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||  ||||||| ||||||    
T  22416498 atatagggtactccggtttgggtttggtcaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttggtttgggt 22416593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 8371617 - 8371571
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattata 63  Q
    |||||| ||||||||||||  |||||||||||||||||||| |||||    
T  8371617 atatagagtactccggtttgggtgaggtaaaatgtccacccgttata 8371571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 8423784 - 8423722
Alignment:
Q  167 ttttttctcacaaaaattactgaacattttattttctttcaaaaattgtgtaatctatttcac 229  Q
    |||||||||| |||| ||||| ||| ||||||||||||   |||||||||||| |||||||||    
T  8423784 ttttttctcataaaatttactcaactttttattttcttaataaaattgtgtaacctatttcac 8423722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 13369572 - 13369494
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||  | ||||  ||||||  ||||||||||||||| ||| |||||||||||||||||    
T  13369572 aaaattgcattagtatcaaaataaccagaaagtacaacatattaatttgtaactctagtatattttgattttcaatata 13369494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 22416937 - 22416983
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  22416937 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 22416983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 30357087 - 30357041
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  30357087 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 30357041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 34899658 - 34899704
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  34899658 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 34899704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 37575710 - 37575664
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  37575710 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 37575664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 376 - 437
Target Start/End: Complemental strand, 8423513 - 8423452
Alignment:
Q  376 ttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataacca 437  Q
    ||||||||||||||||| ||| | || |||||| ||||||| |||||| || ||||||||||    
T  8423513 ttgattttcaatatagatgatttattgtgtcaaatttagaagttagacttggtttataacca 8423452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 18765142 - 18765219
Alignment:
Q  23 ggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttgg 100  Q
    |||||||||||||  ||||||||||||  |||||| ||||| || |||||| ||||||| ||| ||| || |||||||    
T  18765142 ggtactccggtttgggtgaggtaaaataaccacccgttatactattgggtgggtttgggcaaacccactaatttttgg 18765219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 18765445 - 18765510
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgtttt 377  Q
    |||||||| |||  ||||||||||  |||||| |||||||  ||||||||||||||| ||||||||    
T  18765445 aaaattgcattagtatcaaaataaccaaaaagtgcaacatattaatttgtaactctagtatgtttt 18765510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 1e-37; HSPs: 61)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 39330973 - 39330853
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||| |||||||| | ||||||||||||||| ||||||| |||||| ||||||||||| || ||| |||||||||||||||||||||||||||||    
T  39330973 gttggatgacgaaaaatttcattaacatcaaaataactaaaaagtgcaacaacataatttgtagctgtaacatgttttgattttcaatatagaggatgtg 39330874  T
Q  400 ttatgtcaattttagaaatta 420  Q
    || ||||||||||||||||||    
T  39330873 ttgtgtcaattttagaaatta 39330853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 452 - 558
Target Start/End: Complemental strand, 39330775 - 39330669
Alignment:
Q  452 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 551  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||| |    
T  39330775 aaagaaaaattataaccaaaacctttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatgaaaattattgggtaagtgggtttaat 39330676  T
Q  552 gggtttg 558  Q
    | |||||    
T  39330675 gtgtttg 39330669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 452 - 552
Target Start/End: Complemental strand, 38036079 - 38035979
Alignment:
Q  452 aaagaaagattataaccaaaacctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttatt 551  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||| | ||||||||||||||| |||||||    
T  38036079 aaagaaagattataaccaaaacttttgttattctccttcctccctatgaaaatgaaaatgaaaataaaaatatggacattattgggtaagtgggtttatt 38035980  T
Q  552 g 552  Q
    |    
T  38035979 g 38035979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 300 - 423
Target Start/End: Complemental strand, 38036283 - 38036160
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||| |||||||| |||||| ||||| ||| ||||||| |||||||||||||| |||||     
T  38036283 gttggatgacgtaaaattgctttaacatcaaaataactaaaaagtgcaacatcgtaatttttaactataacatgttttaattttcaatatagatgatgta 38036184  T
Q  400 ttatgtcaattttagaaattagac 423  Q
    || ||||||||||| |||||||||    
T  38036183 ttgtgtcaattttaaaaattagac 38036160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 300 - 438
Target Start/End: Original strand, 15836848 - 15836985
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtg 399  Q
    ||||||||| | |||||||| ||||||| ||||||  ||||||| |||||||||||||| |||||| ||| |||||||||||||| |||||||| || ||    
T  15836848 gttggatgacgtaaaattgctttaacataaaaatatctaaaaagtgcaacatcataatt-gtaactataacatgttttgattttcgatatagagaatttg 15836946  T
Q  400 ttatgtcaattttagaaattagacatgatttataaccaa 438  Q
    || ||||||||||  ||| ||||| ||||||||||||||    
T  15836947 ttgtgtcaatttttcaaactagacttgatttataaccaa 15836985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 14795822 - 14795702
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgt 398  Q
    ||||||||| | |||||||| ||||||||||| ||| || ||  | ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  14795822 gttggatgacgtaaaattgctttaacatcaaagtaactataattg-caacatcataatttgtaactctaatattttttttattttcaatatagaggatgt 14795724  T
Q  399 gttatgtcaattttagaaatta 420  Q
    ||| ||||||||||||||||||    
T  14795723 gttgtgtcaattttagaaatta 14795702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 14804696 - 14804576
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgt 398  Q
    ||||||||| | |||||||| ||||||||||| ||| || ||  | ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  14804696 gttggatgacgtaaaattgctttaacatcaaagtaactataattg-caacatcataatttgtaactctaatattttttttattttcaatatagaggatgt 14804598  T
Q  399 gttatgtcaattttagaaatta 420  Q
    ||| ||||||||||||||||||    
T  14804597 gttgtgtcaattttagaaatta 14804576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 420
Target Start/End: Complemental strand, 21969101 - 21968992
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  21969101 aaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatatagaggatgtgttgtgtcaatt 21969002  T
Q  411 ttagaaatta 420  Q
    ||||||||||    
T  21969001 ttagaaatta 21968992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 420
Target Start/End: Complemental strand, 40709929 - 40709820
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  40709929 aaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatatagaggatgtgttgtgtcaatt 40709830  T
Q  411 ttagaaatta 420  Q
    ||||||||||    
T  40709829 ttagaaatta 40709820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 300 - 423
Target Start/End: Complemental strand, 14293746 - 14293620
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatat---agaggat 396  Q
    ||||||||| | |||||| | ||||||||||||||| ||||||| |||| |||||||||||||||| ||| || ||||||||||||||||   ||| |||    
T  14293746 gttggatgacgtaaaatttctttaacatcaaaataactaaaaagtgcaagatcataatttgtaactataacatattttgattttcaatatagaagaagat 14293647  T
Q  397 gtgttatgtcaattttagaaattagac 423  Q
    ||||| ||||||||||| |||||||||    
T  14293646 gtgttgtgtcaattttaaaaattagac 14293620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 29030757 - 29030865
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||| ||| ||||||| || |||  ||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| ||| |||||    
T  29030757 aaaattgctttagcattaaaataactataaaatgcaacatcataatttgtaactctaacatgttttgatttttaatatagaagatgtgttgtgtgaattt 29030856  T
Q  412 tagaaatta 420  Q
    |||||||||    
T  29030857 tagaaatta 29030865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 300 - 420
Target Start/End: Original strand, 19584770 - 19584893
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg---attttcaatatagaggat 396  Q
    ||||||||| | |||||||| ||| ||||||| ||| || |||  |||||||||||||||||||||||||| | ||||    ||||||||||||||||||    
T  19584770 gttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaattttttttatttattttcaatatagaggat 19584869  T
Q  397 gtgttatgtcaattttagaaatta 420  Q
    ||||| ||||||||||||||||||    
T  19584870 gtgttgtgtcaattttagaaatta 19584893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 301 - 420
Target Start/End: Original strand, 51250969 - 51251090
Alignment:
Q  301 ttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg--attttcaatatagaggatgt 398  Q
    |||||||| | |||||| | ||| ||||||| ||| || |||  |||||||||||||||||||||| ||||| ||||   ||||||||||||||||||||    
T  51250969 ttggatgacgtaaaattactttagcatcaaagtaactataaattgcaacatcataatttgtaactccaatatttttttttattttcaatatagaggatgt 51251068  T
Q  399 gttatgtcaattttagaaatta 420  Q
    ||| ||||||||||||||||||    
T  51251069 gttgtgtcaattttagaaatta 51251090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 312 - 420
Target Start/End: Complemental strand, 8059390 - 8059279
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgtt---ttgattttcaatatagaggatgtgttatgtcaa 408  Q
    |||||||| ||| ||| ||| ||| || |||  |||||||||||||||||||||||||||| ||   || ||||||||||||||||||||||| ||||||    
T  8059390 aaaattgctttagcattaaagtaactataaattgcaacatcataatttgtaactctaatattttctttttattttcaatatagaggatgtgttgtgtcaa 8059291  T
Q  409 ttttagaaatta 420  Q
    ||||||||||||    
T  8059290 ttttagaaatta 8059279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 375 - 490
Target Start/End: Complemental strand, 14293619 - 14293508
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 474  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||||||||             ||||||||||||||||| |||||    
T  14293619 tttgattttcaatatagaggatttgttgtgtcaatttttgaaattagacttgatttataaccaa----tttttttttaaagaaagattataaccgaaacc 14293524  T
Q  475 tttgttattctccttc 490  Q
    ||||||||||||||||    
T  14293523 tttgttattctccttc 14293508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 300 - 420
Target Start/End: Original strand, 31200286 - 31200410
Alignment:
Q  300 gttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg----attttcaatatagagga 395  Q
    ||||||||| | || ||||  ||||||||||| ||| || |||  |||||||||||||||||||||||||||| ||||     |||||||||||||||||    
T  31200286 gttggatgacgtaagattgttttaacatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttttttattttcaatatagagga 31200385  T
Q  396 tgtgttatgtcaattttagaaatta 420  Q
    | |||| ||||||||||||||||||    
T  31200386 tatgttgtgtcaattttagaaatta 31200410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 312 - 412
Target Start/End: Complemental strand, 19864644 - 19864544
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||| | |||||||||||||||  |||||| |||| ||| |||||| ||||||||| |||||||||||||||||||| ||| |||||| ||||| |||    
T  19864644 aaaatttcattaacatcaaaataacaaaaaagtgcaatatcttaatttttaactctaacatgttttgattttcaatatatagggtgtgttgtgtcagttt 19864545  T
Q  412 t 412  Q
    |    
T  19864544 t 19864544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 312 - 420
Target Start/End: Complemental strand, 50050185 - 50050075
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgtt--ttgattttcaatatagaggatgtgttatgtcaat 409  Q
    |||||||| ||| ||||||| ||| || |||  ||||||||||||||| |||||||||| | ||  ||  |||||||||||||||||||||| |||||||    
T  50050185 aaaattgctttagcatcaaagtaactataaattgcaacatcataatttataactctaattttttatttttttttcaatatagaggatgtgttgtgtcaat 50050086  T
Q  410 tttagaaatta 420  Q
    |||||||||||    
T  50050085 tttagaaatta 50050075  T

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Target: chr1; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 312 - 392
Target Start/End: Complemental strand, 10789169 - 10789089
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatataga 392  Q
    |||||||| ||| |||||||||||| |||||| |||||||| |||||||||||||||  ||| ||| ||||||||||||||    
T  10789169 aaaattgcattagcatcaaaataatcaaaaagtgcaacatcctaatttgtaactctagcatgctttaattttcaatataga 10789089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 21969414 - 21969326
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgg 105  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| ||||||||||| ||||||| ||||||| || |||| |||||||    
T  21969414 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaatccactaattttcggtttgg 21969326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 220557 - 220612
Alignment:
Q  25 tactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgg 80  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  220557 tactccggtttaggtgaggtaaaatatccacctattatattaatgggtgagtttgg 220612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 43313048 - 43313137
Alignment:
Q  301 ttggatgatgaaaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| | |||||||| ||||| |||| ||||| |||||  |||||||| |||||| ||||||||  ||||||||||||||||||||    
T  43313048 ttggatgacgtaaaattgcattaacttcaatataataaaaaactgcaacatcctaatttataactctatcatgttttgattttcaatata 43313137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 496 - 584
Target Start/End: Original strand, 15837043 - 15837131
Alignment:
Q  496 tatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgttttatcaaaaatccatta 584  Q
    ||||||||||||||| ||| |||||||||||| |||| ||||||||||| |||||||||| || ||||  ||||| | |||| ||||||    
T  15837043 tatgaaaatgaaaatgaaaataaaaatatgaacattactgggtaagtgaatttattgggtctggatctgattttacccaaaacccatta 15837131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 21258037 - 21258105
Alignment:
Q  325 catcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagag 393  Q
    ||||||||||||||||||  |||||||| |||||||||| ||| | |||||||||||||||||| ||||    
T  21258037 catcaaaataattaaaaaatgcaacatcttaatttgtaattctgacatgttttgattttcaatagagag 21258105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 38036588 - 38036500
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgg 105  Q
    ||||||| |||| ||||||  ||||||||||| |||||||  |||||||||||| |||||||||| ||| ||| ||||||| |||||||    
T  38036588 atataggatacttcggtttgggtgaggtaaaacgtccacctgttatattaatggatgagtttgggcaaacccactagttttcggtttgg 38036500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 39783295 - 39783375
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatataga 392  Q
    |||||| | ||| |||||||||||   ||||  ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  39783295 aaaatttcattagcatcaaaataaccgaaaattgcaacatcataatttgtaactctaacatgttttaattttcaatataga 39783375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 432
Target Start/End: Complemental strand, 13488991 - 13488904
Alignment:
Q  345 gcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttat 432  Q
    ||||||||  ||||||||||||||  |||||||||||||||||||| || || | || ||||||||||  ||||||||| ||||||||    
T  13488991 gcaacatccgaatttgtaactctagcatgttttgattttcaatataaagaatatattttgtcaattttgaaaattagacttgatttat 13488904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 14796110 - 14796015
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||  ||||||| ||||||    
T  14796110 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttggtttgggt 14796015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 14804984 - 14804889
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||  ||||||| ||||||    
T  14804984 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaatttccggtttggtttgggt 14804889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 1246627 - 1246549
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| || | ||||||||||| |||||| |||| ||  ||||||||||||||| |||||||||||||| ||||||    
T  1246627 aaaattgcattgatatcaaaataatcaaaaagtgcaatatattaatttgtaactctagtatgttttgatttttaatata 1246549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 14190208 - 14190286
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| | || ||||||||||| |||||| |||||||  ||||| ||||||||| |||||||||||||| ||||||    
T  14190208 aaaattgcatcaatatcaaaataatcaaaaagtgcaacatattaattagtaactctagtatgttttgatttttaatata 14190286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 14294041 - 14293967
Alignment:
Q  38 gtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    ||||||||||| |||||||| ||||||||||||||| ||||| | ||| ||| |||||| |||||||| ||||||    
T  14294041 gtgaggtaaaacgtccacccgttatattaatgggtgggtttgagcaaacccactagtttctggtttggtttgggt 14293967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 29030881 - 29030927
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  29030881 caaaacctttgttattctccttcctccctatgaaaacgaaaataaaa 29030927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 386
Target Start/End: Complemental strand, 40228832 - 40228758
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaa 386  Q
    |||||||| ||| ||| ||||||| |||||||||||||||| ||||| |||||| ||  ||||||||||||||||    
T  40228832 aaaattgcattagcatgaaaataactaaaaagggcaacatcctaattcgtaactatagcatgttttgattttcaa 40228758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 15836546 - 15836631
Alignment:
Q  19 atagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttg 104  Q
    ||||| |||||||||||| |||||  |||| |||||||| ||||||||||||||| |||| || ||||||| ||| ||| ||||||    
T  15836546 ataggatactccggtttaggtgagaaaaaacgtccacccgttatattaatgggtgggtttaggcaaatccactagctttcggtttg 15836631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 7145860 - 7145936
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaata 388  Q
    |||||||| || | ||||||||||| |||||| |||| ||  ||||||||||||||| |||||||||||||| ||||    
T  7145860 aaaattgcattgatatcaaaataatcaaaaagtgcaatatattaatttgtaactctagtatgttttgatttttaata 7145936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 8059703 - 8059639
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttggg 81  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| ||||||||||| |||||||    
T  8059703 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttggg 8059639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 30806710 - 30806786
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaata 388  Q
    |||||||| ||| |||||||||||   ||||  |||||||| ||||||| |||||||| ||||||||||||||||||    
T  30806710 aaaattgcattagcatcaaaataacctaaaaatgcaacatcctaatttgcaactctaacatgttttgattttcaata 30806786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 13705923 - 13705796
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||| ||||||| ||  |||  ||||| || ||||||  ||||||||||||| | ||||||||||||||||||||||   | |  | |||  ||||    
T  13705923 aaaattgcattaacattaatgtaaccaaaaacggaaacatccgaatttgtaactctgacatgttttgattttcaatatagaaagtatcatgtgttgattt 13705824  T
Q  412 tagaaattagacatgatttataaccaaa 439  Q
    |||||||||||| ||||| |||||||||    
T  13705823 tagaaattagacttgattaataaccaaa 13705796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 15573244 - 15573307
Alignment:
Q  376 ttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaa 439  Q
    |||||||||| ||||||| |||| |||||||||||||  ||||||||| |||||||| ||||||    
T  15573244 ttgattttcagtatagagaatgtcttatgtcaattttgaaaattagacttgatttatgaccaaa 15573307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 15836681 - 15836769
Alignment:
Q  140 taatattaaatgactagagtcctcatattttttctcacaaaaattactgaacattttattttctt-tcaaaaattgtgtaatctatttcac 229  Q
    ||||||||||||||  | || ||| |||||||||||| |||||||||| ||| ||||||||||||   ||||||||||||| |||||||||    
T  15836681 taatattaaatgac--gcgtgctcgtattttttctcataaaaattactcaactttttattttcttaaaaaaaattgtgtaacctatttcac 15836769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 19584469 - 19584564
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| ||||||| ||| ||||||| ||| ||| || |||  ||||||| ||||||    
T  19584469 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgagtgggtttgggcaaacccactaatttccggtttggtttgggt 19584564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 14939795 - 14939717
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||| ||||||||||  |||||| |||||||  |||||| ||| |||| |||||||| ||||||||||||    
T  14939795 aaaattgcattaatatcaaaataaccaaaaagtgcaacatattaatttttaattctagtatgtttttattttcaatata 14939717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 14945039 - 14944961
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||| ||||||||||  |||||| |||||||  |||||| ||| |||| |||||||| ||||||||||||    
T  14945039 aaaattgcattaatatcaaaataaccaaaaagtgcaacatattaatttttaattctagtatgtttttattttcaatata 14944961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 14949802 - 14949724
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||| ||||||||||  |||||| |||||||  |||||| ||| |||| |||||||| ||||||||||||    
T  14949802 aaaattgcattaatatcaaaataaccaaaaagtgcaacatattaatttttaattctagtatgtttttattttcaatata 14949724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 28251231 - 28251309
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  ||||||||||  ||||||| ||||||  |||||||||||| || |||||||||||||| ||||||    
T  28251231 aaaattgcattagtatcaaaataaccaaaaaggacaacatattaatttgtaactgtagtatgttttgatttttaatata 28251309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 32829699 - 32829777
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    |||||||| |||  |||||||||| ||||||| |||||||  |||| || |||| || |||||||||||||||||||||    
T  32829699 aaaattgcattagtatcaaaataactaaaaagtgcaacatattaatgtgcaactttagtatgttttgattttcaatata 32829777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 19263865 - 19263801
Alignment:
Q  326 atcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatata 390  Q
    ||||||||||  |||||| | |||||  |||| |||||||||| |||||||||||||||||||||    
T  19263865 atcaaaataaccaaaaagtgtaacatattaatatgtaactctagtatgttttgattttcaatata 19263801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 38036424 - 38036361
Alignment:
Q  167 ttttttctcacaaaaattactgaacattttattttctt-tcaaaaattgtgtaatctatttcac 229  Q
    |||||||||| |||||||||| ||| ||||||||||||   ||||||||||||| |||||||||    
T  38036424 ttttttctcataaaaattactcaactttttattttcttaaaaaaaattgtgtaacctatttcac 38036361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 39331269 - 39331182
Alignment:
Q  25 tactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    ||||| |||||  ||||||||||| ||||| || |||||||||||| || ||||||  ||| ||| ||||||| ||||||| ||||||    
T  39331269 tactctggtttgggtgaggtaaaacgtccatccgttatattaatggttgggtttggacaaacccactagttttcggtttggtttgggt 39331182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 40710220 - 40710149
Alignment:
Q  41 aggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    ||||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||| ||||||| ||||||    
T  40710220 aggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttggtttgggt 40710149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 50050449 - 50050386
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgg 80  Q
    ||||||| || ||||||||  || ||||||||| ||||||| ||| ||||||||||||||||||    
T  50050449 atataggatattccggtttgggttaggtaaaatatccacccgttaaattaatgggtgagtttgg 50050386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 14795686 - 14795640
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  14795686 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 14795640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 14804560 - 14804514
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  14804560 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 14804514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 19584909 - 19584955
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  19584909 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 19584955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 31200426 - 31200472
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  31200426 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 31200472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 476 - 514
Target Start/End: Complemental strand, 40709796 - 40709758
Alignment:
Q  476 ttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  40709796 ttgttattcttcttcttccctatgaaaatgaaattaaaa 40709758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 51250669 - 51250763
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttggg 111  Q
    ||||||||||||||| |||  || ||||||||| | || || ||| |||||||||||||||| || ||| ||| || |||| ||||||| |||||    
T  51250669 atatagggtactccgatttgggttaggtaaaatattcatccgttaaattaatgggtgagtttaggcaaacccactaattttcggtttggtttggg 51250763  T

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Target: chr1; HSP #59
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 51251106 - 51251152
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||    
T  51251106 caaaacatttgttattcttcttcctccctatgaaaatgaaattaaaa 51251152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 19263739 - 19263686
Alignment:
Q  517 aaaaatatgaatattattgggtaagtgagtttattgggtttgaatctcgtttta 570  Q
    |||||||| || ||||||||||||||| |||| |||||||||| ||| ||||||    
T  19263739 aaaaatattaacattattgggtaagtgggttttttgggtttgagtctggtttta 19263686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 32829396 - 32829485
Alignment:
Q  19 atagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggtt 108  Q
    ||||| |||||||||||  ||||||||||||  |||| | ||||| || |||||| ||||||  ||||||| || ||||||| |||||||    
T  32829396 ataggctactccggtttgggtgaggtaaaataaccactcgttatactattgggtgggtttggacaaatccactaatttttgggttgggtt 32829485  T

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Target: scaffold0123 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 375 - 555
Target Start/End: Original strand, 26857 - 27040
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnn---aaagaaagattataaccaaa 471  Q
    |||||||||||||||||||||| |||| |||||||||| ||||||| || |||||||||||||                 ||||||||||||||||||||    
T  26857 tttgattttcaatatagaggatttgttgtgtcaatttttgaaattatacttgatttataaccactttcttttttttttttaaagaaagattataaccaaa 26956  T
Q  472 acctttgttattctccttcttccctatgaaaatgaaaataaaagtaaaaatatgaatattattgggtaagtgagtttattgggt 555  Q
    | |||||| |||||||||| || |||||||||||||||| ||| | |||||||||||| ||||||||||||| |||||||||||    
T  26957 atctttgtaattctccttcctcgctatgaaaatgaaaatgaaaatgaaaatatgaatactattgggtaagtgggtttattgggt 27040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 26747 - 26856
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaattt 411  Q
    |||||||  ||||||||||||||| ||||||| ||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||    
T  26747 aaaattgttttaacatcaaaataactaaaaagtgcaacatcataatttgtaa-tataa-atgttttgattttaaatatagaggatgtgttgtgtcaattt 26844  T
Q  412 tagaaattagac 423  Q
    ||||||||||||    
T  26845 tagaaattagac 26856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 26440 - 26527
Alignment:
Q  25 tactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||| || || ||||| ||||||||||||||||||||||||  |||| | ||| ||| ||||||| ||||||| ||||||    
T  26440 tactccggtttaggtaagataaaacgtccacccattatattaatgggtggatttgcgcaaaaccactagttttcggtttggtttgggt 26527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 312 - 423
Target Start/End: Complemental strand, 28487 - 28375
Alignment:
Q  312 aaaattgcgttaacatcaaaa-taattaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| |||||||||||| ||| ||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||| ||||| ||    
T  28487 aaaattgctttaacatcaaaaataactaaaaagtgcaacatcataatttataactataacatgttttgattttcaatatagatgatgtgttgtgtcagtt 28388  T
Q  411 ttagaaattagac 423  Q
    |||||||||||||    
T  28387 ttagaaattagac 28375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 375 - 511
Target Start/End: Complemental strand, 28374 - 28239
Alignment:
Q  375 tttgattttcaatatagaggatgtgttatgtcaattttagaaattagacatgatttataaccaaacnnnnnnnnnnnaaagaaagattataaccaaaacc 474  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||||||||             |||||||||||||||||||||||    
T  28374 tttgattttcaatatagaggatttgttgtgtcaatttttgaaattagacttgatttataaccaat-ttttcttttttaaagaaagattataaccaaaacc 28276  T
Q  475 tttgttattctccttcttccctatgaaaatgaaaata 511  Q
    |||| ||||||||||| ||||||||||||| ||||||    
T  28275 tttgatattctccttcgtccctatgaaaataaaaata 28239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 28823 - 28735
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgg 105  Q
    ||||||| |||| || |||  |||||||||||||| ||||||||||||||||||||| ||||||  ||| ||| ||||||  |||||||    
T  28823 atataggatacttcgatttgggtgaggtaaaatgttcacccattatattaatgggtgggtttggacaaacccactagtttccggtttgg 28735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 28653 - 28590
Alignment:
Q  167 ttttttctcacaaaaattactgaacattttattttctt-tcaaaaattgtgtaatctatttcac 229  Q
    |||||||||| |||||||||| ||| ||||||||||||   ||||||||||||| |||||||||    
T  28653 ttttttctcataaaaattactcaactttttattttcttaaaaaaaattgtgtaacctatttcac 28590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 553
Target Start/End: Complemental strand, 28246 - 28209
Alignment:
Q  516 taaaaatatgaatattattgggtaagtgagtttattgg 553  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  28246 taaaaatatgaacattattgggtaagtgggtttattgg 28209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 397203 - 397312
Alignment:
Q  312 aaaattgcgttaacatcaaaataattaaaaagggcaacatcataatttgtaactctaatatgttttg-attttcaatatagaggatgtgttatgtcaatt 410  Q
    |||||||| ||| ||| ||| ||| || |||  |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  397203 aaaattgctttagcattaaagtaactataaattgcaacatcataatttgtaactctaatattttttttattttcaatatagaggatgtgttgtgtcaatt 397302  T
Q  411 ttagaaatta 420  Q
    ||||||||||    
T  397303 ttagaaatta 397312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 396890 - 396985
Alignment:
Q  17 atatagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgggt 112  Q
    |||||||||||||||||||  || ||||||||| ||||||| ||| ||||||||||| ||||||| ||| ||| || |||| ||||||| ||||||    
T  396890 atatagggtactccggtttgggttaggtaaaatatccacccgttaaattaatgggtgggtttgggcaaacccactaattttcggtttggtttgggt 396985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 397328 - 397374
Alignment:
Q  468 caaaacctttgttattctccttcttccctatgaaaatgaaaataaaa 514  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||    
T  397328 caaaacatttgttattcttcttcttccctatgaaaatgaaattaaaa 397374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 387
Target Start/End: Complemental strand, 245649 - 245573
Alignment:
Q  312 aaaattgcgttaacatcaaaataa-ttaaaaagggcaacatcataatttgtaactctaatatgttttgattttcaat 387  Q
    |||||||| |||||||| |||||| |||||||| | |||||| |||||| ||||||||  |||||||||||||||||    
T  245649 aaaattgcattaacatcgaaataaattaaaaagtgtaacatcttaatttataactctagcatgttttgattttcaat 245573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 968 - 1035
Alignment:
Q  345 gcaacatcataatttgtaactctaatatgttttgattttcaatatagaggatgtgttatgtcaatttt 412  Q
    ||||||||  ||||||||||| |||  |||||||||||||||||||||| |||  || ||||||||||    
T  968 gcaacatctgaatttgtaactttaacgtgttttgattttcaatatagagaatgctttttgtcaatttt 1035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 2839 - 2748
Alignment:
Q  19 atagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgg 110  Q
    |||||||||| | ||||  ||||||||||||  |||||| |||||||| |||||| ||||||  ||| ||| || ||||||| |||||||||    
T  2839 atagggtacttcagtttgggtgaggtaaaataaccacccgttatattattgggtgggtttggacaaacccactaatttttgggttgggttgg 2748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 4506 - 4415
Alignment:
Q  19 atagggtactccggtttatgtgaggtaaaatgtccacccattatattaatgggtgagtttgggtaaatccattagtttttggtttgggttgg 110  Q
    |||||||||| | ||||  ||||||||||||  |||||| |||||||| |||||| ||||||  ||| ||| || ||||||| |||||||||    
T  4506 atagggtacttcagtttgggtgaggtaaaataaccacccgttatattattgggtgggtttggccaaacccactaatttttgggttgggttgg 4415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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