View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5853_low_11 (Length: 378)
Name: NF5853_low_11
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_11 |
 | |
|
| [»] scaffold0405 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 25 - 266
Target Start/End: Original strand, 19910115 - 19910356
Alignment:
| Q |
25 |
cctttaaataaggtctttattttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatt |
124 |
Q |
| |
|
||||||||||||| ||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19910115 |
cctttaaataaggcctttattttgccaagaaatccttcaatggttcatcttcattctcaaattcaaaaattggagaagaaaaaacaataagttttaaatc |
19910214 |
T |
|
| Q |
125 |
tcagatataatgagacctattatctattccatgtctttgatttaagaaatgcaccgagaagacctcaactaagttctagtgatccttttatcaaacaatt |
224 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
19910215 |
tcaggtataatgagacctattatctattccatgtc-ttgatttaagaaatgcatagagaagacctcaactaagttctcgtgatccttttatcatacaatt |
19910313 |
T |
|
| Q |
225 |
a-gaatgcaaaaaatagcattcatcaaagtgaatgacttgtag |
266 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19910314 |
ataaatgcaaaaaatagcattcatcaaagtgaatgacttgtag |
19910356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 1661326 - 1661534
Alignment:
| Q |
25 |
cctttaaataaggtctttattttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatt |
124 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||| |||||| || | | ||||| |||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
1661326 |
ccttcaaataaggcctttattttgccaaggaagcctgtaatggtacaccataattgttaaattcaaaaatgggaggagaaaaaacaataagttttaaatt |
1661425 |
T |
|
| Q |
125 |
tcagatataatgagacctattatctattccatgtctttgatttaagaaatgcaccgagaagacctcaactaagttctagtgatccttttatcaaacaatt |
224 |
Q |
| |
|
||| |||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| || |
|
|
| T |
1661426 |
acaggcataatgggagctattatctattccatgtc-ttgatttaagaaatgcactgagaagacctcaactaagttttaatgatccttttatcaaacagtt |
1661524 |
T |
|
| Q |
225 |
agaatgcaaa |
234 |
Q |
| |
|
|||||||||| |
|
|
| T |
1661525 |
agaatgcaaa |
1661534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 279 - 355
Target Start/End: Original strand, 19910343 - 19910419
Alignment:
| Q |
279 |
tgaatgacttgtagatgatactaaattgggtactgccaaagcattgcatttccatttctccagttttgaaatctctc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19910343 |
tgaatgacttgtagatgatactaaattggacactgccaaaacattgcatttccatttctcccgttttgaaatctctc |
19910419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 55877858 - 55877810
Alignment:
| Q |
186 |
acctcaactaagttctagtgatccttttatcaaacaattagaatgcaaa |
234 |
Q |
| |
|
||||||||||| ||| || ||||||||||||| ||| |||||||||||| |
|
|
| T |
55877858 |
acctcaactaaattcaagcgatccttttatcatacacttagaatgcaaa |
55877810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 30 - 355
Target Start/End: Complemental strand, 19963951 - 19963630
Alignment:
| Q |
30 |
aaataaggtctttattttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcaga |
129 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||||| || | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19963951 |
aaataaggcctttattttgccaaggaactctgcaatggtacaccgtcattgttaaattcaaaaattggaggagaaaaaacaataagttttaaatttcagg |
19963852 |
T |
|
| Q |
130 |
tataatgagacctattatctattccatgtctttgatttaagaaatgcaccgagaagacctcaactaagttctagtgatccttttatcaaacaattagaat |
229 |
Q |
| |
|
||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||| ||| ||| |
|
|
| T |
19963851 |
cataatgagagctattatctattccatatc-ttgatttaagaaatgcaaagagaagacctcgactaagttctaatgatccttttgtcaaacagttaaaat |
19963753 |
T |
|
| Q |
230 |
gcaaaaaatagcattcatcaaagtgaatgacttgtagtaatnnnnnnnntgaatgacttgtagatgatactaaattgggtactgccaaagcattgcattt |
329 |
Q |
| |
|
|| ||| ||||||||||| ||||||||||||||||||| | |||||||| | || |||||||||||||||| ||||||||||||| |||| |
|
|
| T |
19963752 |
gc--aaagtagcattcatcgaagtgaatgacttgtagtactaacaaaagtgaatgac-tataaatgatactaaattgggcactgccaaagcatcacattc |
19963656 |
T |
|
| Q |
330 |
ccatttctccagttttgaaatctctc |
355 |
Q |
| |
|
| |||||||| |||||||||| |||| |
|
|
| T |
19963655 |
ctatttctcctgttttgaaatatctc |
19963630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 25490376 - 25490145
Alignment:
| Q |
30 |
aaataaggtctttattttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcaga |
129 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||||| |||| ||||||||||||| ||||||| ||||||||||||| |||||||||||| | | |
|
|
| T |
25490376 |
aaataagacctttatttttccaaggaacccgctaatggtacatcctcattgtcaaatttaaaaattcgagaagaaaaaaccgtaagttttaaatctaaag |
25490277 |
T |
|
| Q |
130 |
tataatgagacctattatctattccatgtctttgatttaagaaatgcaccgagaagacctcaactaagttctagtgatccttttatcaaacaattagaat |
229 |
Q |
| |
|
||||||||| | |||| ||||| |||||| ||||||||| || |||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||| |
|
|
| T |
25490276 |
cataatgagagccattacctatttcatgtc-ttgatttaa-aattgcatagagaagacctcaacttagttctagtgatccttttatcaaacggttataat |
25490179 |
T |
|
| Q |
230 |
gcaaaaaatagcattcatcaaagtgaatgacttgta |
265 |
Q |
| |
|
|| ||| |||| ||||||||||||||||||||||| |
|
|
| T |
25490178 |
gc--aaagtagctttcatcaaagtgaatgacttgta |
25490145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 13194 - 13326
Alignment:
| Q |
44 |
ttttgccaaggaacccttcaatggttcatcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcagatataatgagaccta |
143 |
Q |
| |
|
||||||||||||||||| ||| || | || ||||||||| ||||| ||||||||||||||| ||| | |||||||||||||| ||||| ||| || |
|
|
| T |
13194 |
ttttgccaaggaaccctgcaaaggaacttcctcattgtcagattcagaaattggagaagaaacaaccttgagttttaaatttcatgcataataggactta |
13293 |
T |
|
| Q |
144 |
ttatctattccatgtctttgatttaagaaatgca |
177 |
Q |
| |
|
||| || ||||||||| | ||||||| ||||||| |
|
|
| T |
13294 |
ttacctcttccatgtc-tagatttaataaatgca |
13326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 7881508 - 7881563
Alignment:
| Q |
25 |
cctttaaataaggtctttattttgccaaggaacccttcaatggttcatcttcattg |
80 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
7881508 |
ccttcaaataaggcctttattttgccaaggaaccctgcaatggtacatcgtcattg |
7881563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University