View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5853_low_13 (Length: 365)
Name: NF5853_low_13
Description: NF5853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5853_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 348
Target Start/End: Original strand, 36360175 - 36360516
Alignment:
| Q |
6 |
aggagcagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttg |
105 |
Q |
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| T |
36360175 |
aggaccagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttg |
36360274 |
T |
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| Q |
106 |
aatgcctgaatattattatatgtccaattataggaaaatttaagttannnnnnnagaaaatcatttgatgttaatagaaaaccaaattagtatcgcatgg |
205 |
Q |
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| T |
36360275 |
aatgcctgaatattattatatgtccaattataggaaaatttaagttatttttttagaaaatcatt-gatgttaatagaaaaccaaattagtatcgtatgg |
36360373 |
T |
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| Q |
206 |
gcatacaaaatattaaatatgaaatttatcaatagttcgtatatattatgatttttaagctacatattaagagtttattatacctgtgtgtcatccgtat |
305 |
Q |
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| T |
36360374 |
gcatacaaaatattaaatatgaaatttatcaatagttcgtatatattttgatttttaagctatatattaagagtttattatacctgtgtgtcatccgtat |
36360473 |
T |
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| Q |
306 |
gaccatcccctttagctccataatctctaacattaacaatttt |
348 |
Q |
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| T |
36360474 |
gaccatcccctttagctccataatctctaacattaacaatttt |
36360516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 36348911 - 36349031
Alignment:
| Q |
6 |
aggagcagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgc------cctgacgaacatactacttcccaagcc |
99 |
Q |
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| T |
36348911 |
aggaccagagaatctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcctcctgaagaacatactgcttcccaagcc |
36349010 |
T |
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| Q |
100 |
ttcttgaatgcctgaatatta |
120 |
Q |
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| T |
36349011 |
ttctcgaatgcctgaatatta |
36349031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 36349119 - 36349182
Alignment:
| Q |
284 |
tatacctgtgtgtcatccgtatgaccatcccctttagctccataatctctaacattaacaattt |
347 |
Q |
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| T |
36349119 |
tatacctgtgtgtcatcagttttaccatcccctttagctccataatcactgacattaaaaattt |
36349182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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